g.arboreum_cottongen_reftransV1_0006478, g.arboreum_cottongen_reftransV1_0006478 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006478
Unique Nameg.arboreum_cottongen_reftransV1_0006478
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0006478:1..1140 .
Chr1:70117294..70120339 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: A0A078ENA4_BRANA (BnaA03g39830D protein OS=Brassica napus GN=BnaA03g39830D PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 253/323 (78.33%), Postives = 282/323 (87.31%), Query Frame = 2 
Query:  179 METVFSAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV---LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            ME+  S ++  +SK+      ++FL S S+FTSTEAYDALDP GNIT+KWDV+SWTPDGYVAVVTM+NFQ+YRHI +PGWTLGW WAKKEVIWSM+G+QTTEQGDCSKYKGN+PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDP  AASSFQ+SVGAAGTTNKTVRVPRNFTL  PGPGYTCGPAKIV+PT+F+T D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSFYN TIV CPTCACGCQNN TESG+C+   + HLAS V     K T  PPL+QCT H+CP+R+HWHVK NYKEYWRVKITITNF
Sbjct:    1 MESFISRSTSIVSKMSFLAVGIVFLVSSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIPSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNLPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPGTAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTQFVTPDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNKTESGACLDPDTPHLASVVSPPTKKGTILPPLVQCTRHLCPIRVHWHVKQNYKEYWRVKITITNF 323
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: A0A0D3DDH0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 253/323 (78.33%), Postives = 282/323 (87.31%), Query Frame = 2 
Query:  179 METVFSAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV---LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            ME+  S ++  +SK+      ++FL S S+FTSTEAYDALDP GNIT+KWDV+SWTPDGYVAVVTM+NFQ+YRHI +PGWTLGW WAKKEVIWSM+G+QTTEQGDCSKYKGN+PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDP  AASSFQ+SVGAAGTTNKTVRVPRNFTL  PGPGYTCGPAKIV+PT+F+T D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSFYN TIV CPTCACGCQNN TESG+C+   + HLAS V     K T  PPL+QCT H+CP+R+HWHVK NYKEYWRVKITITNF
Sbjct:    1 MESFISRSTSIVSKMSFLAVGIVFLISSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIPSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNLPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPGTAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTQFVTPDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNKTESGACLDPDTPHLASVVSPPTKKGTILPPLVQCTRHLCPIRVHWHVKQNYKEYWRVKITITNF 323
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: M5W9K2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024172mg PE=4 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 248/286 (86.71%), Postives = 267/286 (93.36%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYDALDPTGNITIKWDVISWTPDGYVAVVTM+NFQQYRHIQ PGWTLGWTWAKKEVIWSM+G+QTTEQGDCS+YKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGV+NSW+QDPANA SSFQ+SVGAAGTTNKTVR+P+NFTLKAPGPGY+CG AKIVKPT+F+TADKRR TQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYN TIV+CPTCACGCQNN+T+ GSCV            GKSTNA PL+QCTSHMCPVR+HWHVK+NYKEYWRVK+TITNF
Sbjct:   35 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMFNFQQYRHIQTPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSRYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWIQDPANAISSFQISVGAAGTTNKTVRLPKNFTLKAPGPGYSCGIAKIVKPTRFLTADKRRWTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNATDPGSCVDCIGP-------GKSTNA-PLVQCTSHMCPVRVHWHVKINYKEYWRVKVTITNF 312
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: K4B708_SOLLC (COBRA protein OS=Solanum lycopersicum GN=Solyc02g065770.2 PE=2 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 245/288 (85.07%), Postives = 264/288 (91.67%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV--LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            +A+DALDP GNITIKWDVISWTPDGYVAVVTM+NFQQYRHIQAPGWTLGWTWAKKEVIW MMG+QTTEQGDCSK+KGN+PHCCK+DPTVVDLLPGTPYNQQIANCCKGGV+NSW QDP  A SSFQVSVGAAGTTNKTVRVP+NFTLKAPGPGYTCGPAK+VKPTKF + D RRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYN+TIV CPTC CGCQ N T+ G+CV +   HLAS V  LGK+ N  PL+QCTSHMCP+RIHWHVKLNYKEYWRVK+TITNF
Sbjct:   23 DAFDALDPNGNITIKWDVISWTPDGYVAVVTMFNFQQYRHIQAPGWTLGWTWAKKEVIWGMMGAQTTEQGDCSKFKGNIPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVINSWGQDPETAVSSFQVSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVVKPTKFSSGDGRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCTCGCQKNGTQHGNCVDQDEPHLASVVSGLGKN-NYAPLVQCTSHMCPIRIHWHVKLNYKEYWRVKVTITNF 309
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: M0S2Q7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 243/287 (84.67%), Postives = 265/287 (92.33%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNA-PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYD+LDP GNITIKWD++ WTPDGYVAVVT++NFQQYRHIQAPGW LGWTWAKKEVIWSM+G+QTTEQGDCS++KGN PHCCKKDPTVVDLLPGTPYNQQIANCCKGGV+NSWVQDPANAASSFQVSVGAAGTTNKTVRVP+NFTL+APGPGYTCG AKIVKPTKF+T D RR TQA+MTWNVTCTYSQFLAQKTPTCCVSLSSFYN+TIVNCPTC CGCQNN+T+ GSCV   S +LAS + G   N+  PL+QCTSHMCPVR+HWHVKLNYKEYWRVKI ITNF
Sbjct:   40 EAYDSLDPNGNITIKWDIMQWTPDGYVAVVTIFNFQQYRHIQAPGWILGWTWAKKEVIWSMVGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQVSVGAAGTTNKTVRVPKNFTLRAPGPGYTCGIAKIVKPTKFVTQDGRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNATQPGSCVEGDSPYLASVINGPGKNSFTPLVQCTSHMCPVRVHWHVKLNYKEYWRVKIAITNF 326
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0
Identity = 258/323 (79.88%), Postives = 285/323 (88.24%), Query Frame = 2 
Query:  179 METVFSAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV---LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            ME+ FS ++  +SKL      ++FL S S+FTSTEAYDALDP GNIT+KWDV+SWTPDGYVAVVTM+NFQ+YRHIQ+PGWTLGW WAKKEVIWSM+G+QTTEQGDCSKYKGN+PHCCKKDPTVVDLLPGTPYNQQIANCCKGGV+NSWVQDPA AASSFQ+SVGAAGTTNKTVRVPRNFTL  PGPGYTCGPAKIV+PTKF+T D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSFYN TIV CPTCACGCQNN TESG+C+   + HLAS V     K T  PPL+QCT HMCP+R+HWHVK NYKEYWRVKITITNF
Sbjct:    1 MESFFSRSTSIVSKLSFLALWIVFLISSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNF 323
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 507.679 bits (1306), Expect = 8.680e-177
Identity = 241/316 (76.27%), Postives = 271/316 (85.76%), Query Frame = 2 
Query:  194 SAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKST-NAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            + +SRS++       LL      S   +TEAYDALDP GNITIKWDV+SWTPDGYVAVVTM+N+QQ+RHIQAPGW LGWTWAKKEVIWSM+G+QTTEQGDCSK+KG  PHCCKKDPTVVDLLPGTPYN QIANCCK GV+N++ QDP+NAASSFQ+SVG AGTTNKTV++P+NFTLKAPGPGYTCG A IV+PTKF T D RR TQA+MTWNVTCTYSQFLAQKTP+CCVSLSSFYN+TIVNCPTC+CGCQNN T  GSCV+E S +L SA+ G       PL+QCTSHMCP+RIHWHVKLNYKEYWRVKITITNF
Sbjct:    6 AGSSRSVAPCCCCAVLLAAALLFSAPATTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGGTPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQISVGLAGTTNKTVKLPKNFTLKAPGPGYTCGRAMIVRPTKFFTGDGRRATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSAIDGPGKWTGQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNF 321
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 1.898e-170
Identity = 224/288 (77.78%), Postives = 256/288 (88.89%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV--LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYD LDP+GNIT+KWD+I+WT DGYVA VT+YNFQQYRHIQAPGWTLGW+WAK+EVIW M G QTTEQGDCSK+KG +PHCCKK P+VVDLLPG+PYNQQIANCC+GGVLNSW QDPA A S+FQ++VG AGTTNKTVRVP+NFTLKAPGPGYTC PAKIVKPT+FI  DKRR+TQA+MTWNVTCTYSQFLAQKTPTCCVSLSSFYN TIV+CPTC+CGC+N S + G+CV  +   +AS +   GK+   PPL+QCT HMCPVRIHWHVK+NYK+YWRVK+TITNF
Sbjct:   32 EAYDPLDPSGNITVKWDIITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMNGGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATAVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNTS-QPGNCVDPKGPRIASVIPNPGKNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNF 318
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 486.878 bits (1252), Expect = 8.507e-169
Identity = 222/287 (77.35%), Postives = 252/287 (87.80%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNA-PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYD LDP GNITIKWDV+ WTPDGYVAVV++YN+QQYRHIQ+PGW LGW WAKKE+IW+M G Q TEQGDCSK+K N+PHCCKKDP +VDLLPGTPYN QIANCCKGGVLNSW QDPANA +SFQVSVG AGTTNKTVRVPRNFTLK+PGPGYTCG AK+V+PTKF + D RR TQA MTWNVTCTYSQ +AQ++PTCCVSLSSFYN+TIVNCPTC+CGCQNN  + GSCV   S +LAS V   + ++  PL+QCTSHMCP+R+HWHVK+NYKEYWRVKIT+TNF
Sbjct:   27 EAYDPLDPNGNITIKWDVLQWTPDGYVAVVSLYNYQQYRHIQSPGWKLGWVWAKKEIIWAMNGGQATEQGDCSKFKSNIPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDPANAIASFQVSVGQAGTTNKTVRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNN--KPGSCVEGNSPYLASVVNTHNKDSLTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNF 311
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 474.552 bits (1220), Expect = 4.668e-164
Identity = 214/286 (74.83%), Postives = 254/286 (88.81%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYDALDP GNITIKWD++SWT DGYVAVVT++NFQQYRHI+APGW LGW+W KKEVIWSM+G Q TEQGDCSK+KGN+PHCCKK P +VDLLPGTPYNQQI+NCC+GGV+++W QDPA A SSFQ+SVG +GTTN TVR PRN TLKAPGPGYTCGPAK+VKP++FI+ADKRR TQ+++TWN+TCTYSQFLA+KTPTCCVSLS+FYN TIV CPTC+CGCQ NS+++G+CV  + + +  A LGK+ N  PLLQCT HMCP+R+HWHVK +YKEYWRVK+ ITNF
Sbjct:   27 EAYDALDPYGNITIKWDIMSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMVGGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAISSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQSLLTWNITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQ-NSSQAGTCVDPKIASVVPA-LGKN-NLEPLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNF 309
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 454.136 bits (1167), Expect = 6.853e-156
Identity = 208/288 (72.22%), Postives = 241/288 (83.68%), Query Frame = 2 
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVK-PTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNA-PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYD LDP GNITIKWD+  WTPDGYVAVVT+YNFQ+YRHIQAPGW+LGW WAKKE+IWSM G Q TEQGDCS +K N+PHCCK+DP VVDL+PG PYN Q  NCCKGGVL SWVQDP NA +SFQ++VG +GT+NKTV+ P+NFTLKAPGPGY+CG A+ VK PT+FI+ D RR TQA +TWNVTCTYSQF+AQ+ PTCCVSLSSFYN TIVNCP CACGCQN   + GSCV   S +LAS V G    +  PL+QCT HMCP+R+HWHVKLNY++YWRVK+TITN+
Sbjct:   28 EAYDPLDPNGNITIKWDITQWTPDGYVAVVTIYNFQKYRHIQAPGWSLGWAWAKKEIIWSMAGGQATEQGDCSAFKANIPHCCKRDPRVVDLVPGAPYNMQFGNCCKGGVLTSWVQDPLNAVASFQITVGHSGTSNKTVKAPKNFTLKAPGPGYSCGLAQEVKPPTRFISLDGRRTTQAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNK--KPGSCVEGNSPYLASVVNGPGKGSLTPLVQCTPHMCPIRVHWHVKLNYRDYWRVKVTITNW 313
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 448.743 bits (1153), Expect = 4.219e-154
Identity = 213/287 (74.22%), Postives = 235/287 (81.88%), Query Frame = 2 
Query:  284 AYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLG--KSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            AYD LDP+GNITIKWD++SWT DGYVA VTM NFQ YRHIQ PGWTLGWTWAKKEVIWSM+G+QTTEQGDCSK+KGNVPHCCKK PTVVDLLPG PYNQQ +NCCKGGV+ +W QDP+ A S FQVS G AGTTNKTV++P+NFTL  PGPGYTCGPAKIV  T F+T DKRR TQA+MTWNVTCTYSQFLA+K P+CCVS SSFYN+TI  CP+CACGC+N      SCV   S  L    L   K  N  PLLQCT HMCPVR+HWHVK NYK+YWRVKI ITNF
Sbjct:   20 AYDPLDPSGNITIKWDIMSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCENKK----SCVKADSKILTKKGLNTPKKDNT-PLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNF 301
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 3.909e-141
Identity = 197/302 (65.23%), Postives = 232/302 (76.82%), Query Frame = 2 
Query:  284 AYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNA-----------------PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            AYD LDP GNITIKWDV+SWTPDGYVA+VT+ N+Q YR I APGWT+GWTWA++EVIWSM+G+Q T+QGDCS++K N+PHCC++ P VVDLLPG PYNQQIANCC+GGVL ++ Q P+ AA++FQVSVG AGTTN+TVR+PRNFTL  PGPGYTCG A++V  T F+TAD+RR TQA+MTWNVTCTYSQ LA K P+CCVS SSFYN+TIV C  CACGC  +      CV         AV GK  +A                  PLLQCT+HMCPVR+HWHVKLNY+EYWR KITI NF
Sbjct:   21 AYDPLDPNGNITIKWDVMSWTPDGYVAMVTINNYQTYRQIMAPGWTVGWTWARQEVIWSMVGAQATDQGDCSRFKANLPHCCRRTPAVVDLLPGVPYNQQIANCCRGGVLPAYGQAPSAAAAAFQVSVGQAGTTNRTVRLPRNFTLLGPGPGYTCGRARVVPSTVFLTADRRRKTQALMTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGCDAHK----PCVRSERDGKRLAVTGKKHDANANAHGRGNGVAAAAMAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNF 318
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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 5.312e-139
Identity = 196/314 (62.42%), Postives = 232/314 (73.89%), Query Frame = 2 
Query:  284 AYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNN----------STESG------------------SCVSERSSH-LASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            AYD LDP GNITIKWDVISWTPDGYVA+VTM N+Q YR I APGWT+GW+WAKKEVIWS++G+Q TEQGDCSK+KG +PH CK+ P +VDLLPG PYNQQIANCCK GV++++ QDPA + S+FQVSVG AGTTNKTV++P NFTL  PGPGYTCGPA IV  T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSFYN+TIV C  CACGC ++          +  +G                   C+   S   L++ V     +  PLLQCTSHMCP+R+HWHVKLNYK+YWR KI ITNF
Sbjct:   22 AYDPLDPKGNITIKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIVGAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNF 335
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 5.312e-139
Identity = 196/314 (62.42%), Postives = 232/314 (73.89%), Query Frame = 2 
Query:  284 AYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNN----------STESG------------------SCVSERSSH-LASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            AYD LDP GNITIKWDVISWTPDGYVA+VTM N+Q YR I APGWT+GW+WAKKEVIWS++G+Q TEQGDCSK+KG +PH CK+ P +VDLLPG PYNQQIANCCK GV++++ QDPA + S+FQVSVG AGTTNKTV++P NFTL  PGPGYTCGPA IV  T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSFYN+TIV C  CACGC ++          +  +G                   C+   S   L++ V     +  PLLQCTSHMCP+R+HWHVKLNYK+YWR KI ITNF
Sbjct:   22 AYDPLDPKGNITIKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIVGAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNF 335
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078ENA4_BRANA0.000e+078.33BnaA03g39830D protein OS=Brassica napus GN=BnaA03g... [more]
A0A0D3DDH0_BRAOL0.000e+078.33Uncharacterized protein OS=Brassica oleracea var. ... [more]
M5W9K2_PRUPE0.000e+086.71Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
K4B708_SOLLC0.000e+085.07COBRA protein OS=Solanum lycopersicum GN=Solyc02g0... [more]
M0S2Q7_MUSAM0.000e+084.67Uncharacterized protein OS=Musa acuminata subsp. m... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
COBRA_ARATH0.000e+079.88Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL3_ORYSJ8.680e-17776.27COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL1_ARATH1.898e-17077.78COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ORYSJ8.507e-16977.35COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL2_ARATH4.668e-16474.83COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ORYSJ6.853e-15672.22COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH4.219e-15474.22COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL6_ORYSJ3.909e-14165.23COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ5.312e-13962.42COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI5.312e-13962.42COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006918COBRA, plantPIRSFPIRSF038122COBRAcoord: 8..320
e-value: 1.1E-175
score: 581.9
IPR006918COBRA, plantPFAMPF04833COBRAcoord: 60..223
e-value: 1.4E-73
score: 246.1
IPR006918COBRA, plantPRODOMPD140986coord: 35..222
e-value: 1.0E-101
score: 947.0
NoneNo IPR availablePANTHERPTHR31673FAMILY NOT NAMEDcoord: 1..320
NoneNo IPR availablePANTHERPTHR31673:SF3COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATEDcoord: 1..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..36
score: 0.665
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..36
score: 0.477
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..36
score: 0.771

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006478 ID=g.arboreum_cottongen_reftransV1_0006478; Name=g.arboreum_cottongen_reftransV1_0006478; organism=Gossypium arboreum; type=contig; length=1140bp
GGAGCATGTACCTCTCTGTCTCAGACTCTGTACTAAAATGCTTTTATAAG
CTTCACTTGCAACTCAACAGCTGACCTCTATCTTCTCCATTTGATGCGAG
AAGGATCTTTCTTTCTTTATTCTGCACATCTTAACCTTAACCACATCATA
AGATAGAGATCTCTTAAACGATCGAGTTATGGAGACTGTCTTTTCTGCAG
CAAGTAGATCCATTTCCAAGCTCATTAGCTTCACCGCTTTGCTTCTTTTC
TTGTTTTCCTGCTCTACTTTCACTTCTACTGAAGCTTATGATGCGCTTGA
TCCAACTGGAAATATCACTATCAAATGGGACGTAATAAGTTGGACCCCAG
ATGGCTATGTTGCTGTTGTTACAATGTACAATTTCCAACAGTATCGCCAT
ATTCAGGCACCTGGTTGGACATTGGGGTGGACATGGGCCAAAAAGGAAGT
AATCTGGAGCATGATGGGAAGCCAAACCACGGAACAAGGGGATTGTTCAA
AATACAAAGGAAACGTCCCTCATTGCTGTAAAAAGGATCCCACAGTTGTG
GATTTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAA
AGGGGGGGTATTAAATTCATGGGTTCAAGACCCGGCCAATGCAGCAAGCT
CATTTCAGGTTAGTGTGGGCGCTGCAGGAACGACGAACAAAACTGTGAGA
GTGCCTAGAAACTTTACCCTGAAAGCACCAGGTCCAGGATATACTTGTGG
GCCTGCCAAGATTGTGAAACCCACTAAATTCATAACGGCTGATAAAAGGA
GAATAACTCAAGCTATGATGACATGGAATGTTACATGCACATATTCCCAA
TTCCTGGCTCAAAAGACTCCTACATGTTGCGTCTCGCTCTCTTCCTTCTA
TAATAACACTATCGTGAATTGCCCGACATGTGCTTGTGGCTGTCAGAATA
ACTCAACTGAATCTGGGAGTTGTGTAAGCGAAAGGTCTTCACATTTAGCT
TCAGCTGTTCTGGGCAAATCTACCAATGCACCACCTTTGCTTCAGTGTAC
GAGCCATATGTGTCCAGTTCGAATTCACTGGCATGTTAAGCTCAACTACA
AGGAATACTGGCGTGTGAAGATCACGATCACCAATTTCAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006918COBRA_pln
Vocabulary: Cellular Component
TermDefinition
GO:0031225obsolete anchored component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0010215cellulose microfibril organization
GO:0016049cell growth