g.arboreum_cottongen_reftransV1_0018389, g.arboreum_cottongen_reftransV1_0018389 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: G7JFF7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g115690 PE=4 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 6.511e-107 Identity = 188/374 (50.27%), Postives = 252/374 (67.38%), Query Frame = -1 Query: 1 VLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALK-DPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1119 ++++LEALKQA Q +Q H H S SNSS IKAL +L T I+ P S +S HL LK LV +L+ ++ L+SF+TR +S++SI++ + +IESE+Q+ +DR ++ +L + + ++EDEL +LL++F RVSQGFN ELQ VL K F L+++L DP CS +IRE A F ++ALIRFNKDVFVG+V M T++AL+++ S S++VLC LI I+SP VD I NGE+ KI+ LL S ++ + ++ C+LEIGYFGRKEAVE ML G++EK VELQR E FASCVARFAVQLEVGEGLR+REKR+FK EIL +VREA V+DAEAATI+AEVL Sbjct: 21 LIQVLEALKQASQNIQNHHNHFS-DSNSSSIKALFQLHT----IL---PTNSNISHHLTHLKSLVNSLQSSKP-SLKSFITRPLSSHSITKTSAAIESELQSWIDRETVTTLSCLVSGNNNENEDELLQLLTRFSDRVSQGFNRELQQLVLNLKLFCSLESLLFDPKCSHRIREHAGFAISALIRFNKDVFVGEVLMNPTVEALIDIGSVRSIEVLCSLIRLIRSPIVDEIESNGEITKIIALLNSDNMKLSLLAMECVLEIGYFGRKEAVEGMLKEGVVEKFVELQRLE------------------------------SEFASCVARFAVQLEVGEGLRQREKRSFKGEILVRVREACVSDAEAATIVAEVL 355
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: I3S930_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 6.653e-107 Identity = 188/374 (50.27%), Postives = 252/374 (67.38%), Query Frame = -1 Query: 1 VLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALK-DPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1119 ++++LEALKQA Q +Q H H S SNSS IKAL +L T I+ P S +S HL LK LV +L+ ++ L+SF+TR +S++SI++ + +IESE+Q+ +DR ++ +L + + ++EDEL +LL++F RVSQGFN ELQ VL K F L+++L DP CS +IRE A F ++ALIRFNKDVFVG+V M T++AL+++ S S++VLC LI I+SP VD I NGE+ KI+ LL S ++ + ++ C+LEIGYFGRKEAVE ML G++EK VELQR E FASCVARFAVQLEVGEGLR+REKR+FK EIL +VREA V+DAEAATI+AEVL Sbjct: 21 LIQVLEALKQASQNIQNHHNHFS-DSNSSSIKALFQLHT----IL---PTNSNISHHLTHLKSLVNSLQSSKP-SLKSFITRPLSSHSITKTSAAIESELQSWIDRETVTTLSCLVSGNNNENEDELLQLLTRFSDRVSQGFNRELQQLVLNLKLFCSLESLLFDPKCSHRIREHAGFAISALIRFNKDVFVGEVLMNPTVEALIDIGSVRSIEVLCSLIRLIRSPIVDEIESNGEITKIIALLNSDNMKLSLLAMECVLEIGYFGRKEAVEGMLKEGVVEKFVELQRLE------------------------------SEFASCVARFAVQLEVGEGLRQREKRSFKGEILVRVREACVSDAEAATIVAEVL 355
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A0D2TEJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G059500 PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 3.087e-106 Identity = 180/385 (46.75%), Postives = 260/385 (67.53%), Query Frame = -1 Query: 1 DSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSE--FGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1149 D + +DN + LL +L++A ++LQ P S S ++ L LE +++ I+S DP LS LS+ L LK L+E L++ +GY L S L R++ Y I +VA SI++EIQA DR S+ +L+ L+ DEDE ++L++FE R+SQGF+ QD +LK+K FS+L+ +LCD +CS +I+++ A +A+LIRFNKDVFVG V MG T++AL+ M S S++VL LI FI+ P VD + + E+P+I++LL S+++S++V +CIL I Y+GR+EA+EAML GL+EKLV+LQR E D G G + + E+ ++ N PF CVARFAVQLE GE L K+EK FK EIL +VREAS+++AE ATI+AEVL Sbjct: 2 DHTSNQDNQQLFSLLTSLQKASKDLQKTPIF-STHEPQSTLEPFLHLEKDANPILSNDPHLSKLSQLLCNLKTLLEKLQKYQGYTLPSILRRQIINYKIYQVAYSIDTEIQAYFDRQSVQNLVETLEGS-DDEDEKVKVLAEFEKRLSQGFDSYFQDLILKAKVFSILELLLCDSSCSIRIQDQVALVIASLIRFNKDVFVGLVLMGPTVRALISMPSCCSIRVLSLLIKFIRIPLVDELEAHKEIPRIISLLSSENVSIQVGALDCILGIAYYGRREAIEAMLEAGLVEKLVKLQRLEKQSNDDENGTNNGGGSKSDPKMECDEEGYVGNCPFEGCVARFAVQLEAGEMLSKKEKIEFKLEILRRVREASISEAETATIVAEVL 384
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A067KBP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07138 PE=4 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 5.592e-103 Identity = 170/386 (44.04%), Postives = 265/386 (68.65%), Query Frame = -1 Query: 1 DSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKD--EDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY-GNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1149 D + +D+ +L +LEAL++A ++LQ + + + + +++LL L E+D++ S +P LS L L LK L + ++ ++GY L+S L+R+++ Y I +V +IE+E+QA +D+ + +L+ +++ D ED+L R+L FE R+SQGF+ + Q+ VL++K FS+L++++CD +IRE+AA CV L+RFN+DVFVG V MG +Q+L+ S S++VLC LI I++P +D I GE+P+I++L S+DLS++V +C+ EI YFGRKE +EAM+ GLIEKL+ELQRS G DL ++ GN + + KK PFASCVARFA+Q+EVGEGL ++E++ K EIL +VREASV++AEAA+++AEVL Sbjct: 2 DQTQVKDDRSLLYMLEALRKASKDLQNNSIFIT-HNPQTIMESLLNLRNEADALFSTNPNLSKLCNLLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECVRNLVRIIQETESDSEEDKL-RVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRPMKIREQAALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLIDEIELEGEIPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRSTCGDDLAERDQFNGNVSNAEVCAEIVKK----RPFASCVARFALQVEVGEGLERKERKELKREILRRVREASVSEAEAASVVAEVL 381
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: N0DKR4_LOTJA (Uncharacterized protein OS=Lotus japonicus GN=LjTDF-5 PE=2 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 6.139e-103 Identity = 193/375 (51.47%), Postives = 250/375 (66.67%), Query Frame = -1 Query: 1 PGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1125 P VL++L+ALKQA ++Q + S + + I ALL+L T +S D S LS HL LK L+++L +G +RSFLTR +S +SISRVA SIE+E+QA +DR + +L +L + D L LL+Q RV+QGF+ E Q+ VL K FS L+++L D C + +RE A +AALIRFNKDVFVGQV MG T++AL+ M S S+ VLC L+ I+SPFVD I NGE+PKI+ LL S DL + V+ +LEIGYFGRKEA+EAM+ G++EKLVELQR E G GM HPFASCVA FAVQL+VGEGLR+REKRA KPEILE+VR+AS++DAE+ATI+AEVL Sbjct: 22 PQVLQVLQALKQASHDIQHSSSSSSDDHSPA-INALLQLHT----TLSTD---SPLSHHLHRLKTLLDSLHNAKG--IRSFLTRPLSAHSISRVAASIEAELQAWIDRETTQTLSRSLTNN-HDLLLLLPLLTQLIDRVNQGFDREFQNLVLTMKLFSSLESLLFDEKCQQPVREHAGMAIAALIRFNKDVFVGQVLMGPTVRALVSMASVDSLDVLCSLVKSIRSPFVDEIESNGEIPKIIALLGSDDLQLTVLAVEVVLEIGYFGRKEAIEAMMKEGVVEKLVELQRLEVEGGGGGM---------------------RHPFASCVAMFAVQLDVGEGLRQREKRALKPEILERVRKASLSDAESATIVAEVL 364 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018389 ID=g.arboreum_cottongen_reftransV1_0018389; Name=g.arboreum_cottongen_reftransV1_0018389; organism=Gossypium arboreum; type=contig; length=1230bpback to top |