g.arboreum_cottongen_reftransV1_0018389, g.arboreum_cottongen_reftransV1_0018389 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018389
Unique Nameg.arboreum_cottongen_reftransV1_0018389
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0018389:1..1230 .
Chr10:69478548..69479777 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: G7JFF7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g115690 PE=4 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 6.511e-107
Identity = 188/374 (50.27%), Postives = 252/374 (67.38%), Query Frame = -1
Query:    1 VLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALK-DPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1119
            ++++LEALKQA Q +Q H  H S  SNSS IKAL +L T    I+   P  S +S HL  LK LV +L+ ++   L+SF+TR +S++SI++ + +IESE+Q+ +DR ++ +L   +  +  ++EDEL +LL++F  RVSQGFN ELQ  VL  K F  L+++L DP CS +IRE A F ++ALIRFNKDVFVG+V M  T++AL+++ S  S++VLC LI  I+SP VD I  NGE+ KI+ LL S ++ + ++   C+LEIGYFGRKEAVE ML  G++EK VELQR E                                FASCVARFAVQLEVGEGLR+REKR+FK EIL +VREA V+DAEAATI+AEVL
Sbjct:   21 LIQVLEALKQASQNIQNHHNHFS-DSNSSSIKALFQLHT----IL---PTNSNISHHLTHLKSLVNSLQSSKP-SLKSFITRPLSSHSITKTSAAIESELQSWIDRETVTTLSCLVSGNNNENEDELLQLLTRFSDRVSQGFNRELQQLVLNLKLFCSLESLLFDPKCSHRIREHAGFAISALIRFNKDVFVGEVLMNPTVEALIDIGSVRSIEVLCSLIRLIRSPIVDEIESNGEITKIIALLNSDNMKLSLLAMECVLEIGYFGRKEAVEGMLKEGVVEKFVELQRLE------------------------------SEFASCVARFAVQLEVGEGLRQREKRSFKGEILVRVREACVSDAEAATIVAEVL 355          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: I3S930_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 6.653e-107
Identity = 188/374 (50.27%), Postives = 252/374 (67.38%), Query Frame = -1
Query:    1 VLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALK-DPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1119
            ++++LEALKQA Q +Q H  H S  SNSS IKAL +L T    I+   P  S +S HL  LK LV +L+ ++   L+SF+TR +S++SI++ + +IESE+Q+ +DR ++ +L   +  +  ++EDEL +LL++F  RVSQGFN ELQ  VL  K F  L+++L DP CS +IRE A F ++ALIRFNKDVFVG+V M  T++AL+++ S  S++VLC LI  I+SP VD I  NGE+ KI+ LL S ++ + ++   C+LEIGYFGRKEAVE ML  G++EK VELQR E                                FASCVARFAVQLEVGEGLR+REKR+FK EIL +VREA V+DAEAATI+AEVL
Sbjct:   21 LIQVLEALKQASQNIQNHHNHFS-DSNSSSIKALFQLHT----IL---PTNSNISHHLTHLKSLVNSLQSSKP-SLKSFITRPLSSHSITKTSAAIESELQSWIDRETVTTLSCLVSGNNNENEDELLQLLTRFSDRVSQGFNRELQQLVLNLKLFCSLESLLFDPKCSHRIREHAGFAISALIRFNKDVFVGEVLMNPTVEALIDIGSVRSIEVLCSLIRLIRSPIVDEIESNGEITKIIALLNSDNMKLSLLAMECVLEIGYFGRKEAVEGMLKEGVVEKFVELQRLE------------------------------SEFASCVARFAVQLEVGEGLRQREKRSFKGEILVRVREACVSDAEAATIVAEVL 355          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A0D2TEJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G059500 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.087e-106
Identity = 180/385 (46.75%), Postives = 260/385 (67.53%), Query Frame = -1
Query:    1 DSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSE--FGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1149
            D +  +DN  +  LL +L++A ++LQ  P   S     S ++  L LE +++ I+S DP LS LS+ L  LK L+E L++ +GY L S L R++  Y I +VA SI++EIQA  DR S+ +L+  L+    DEDE  ++L++FE R+SQGF+   QD +LK+K FS+L+ +LCD +CS +I+++ A  +A+LIRFNKDVFVG V MG T++AL+ M S  S++VL  LI FI+ P VD +  + E+P+I++LL S+++S++V   +CIL I Y+GR+EA+EAML  GL+EKLV+LQR E     D  G    G      + +  E+ ++ N PF  CVARFAVQLE GE L K+EK  FK EIL +VREAS+++AE ATI+AEVL
Sbjct:    2 DHTSNQDNQQLFSLLTSLQKASKDLQKTPIF-STHEPQSTLEPFLHLEKDANPILSNDPHLSKLSQLLCNLKTLLEKLQKYQGYTLPSILRRQIINYKIYQVAYSIDTEIQAYFDRQSVQNLVETLEGS-DDEDEKVKVLAEFEKRLSQGFDSYFQDLILKAKVFSILELLLCDSSCSIRIQDQVALVIASLIRFNKDVFVGLVLMGPTVRALISMPSCCSIRVLSLLIKFIRIPLVDELEAHKEIPRIISLLSSENVSIQVGALDCILGIAYYGRREAIEAMLEAGLVEKLVKLQRLEKQSNDDENGTNNGGGSKSDPKMECDEEGYVGNCPFEGCVARFAVQLEAGEMLSKKEKIEFKLEILRRVREASISEAETATIVAEVL 384          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A067KBP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07138 PE=4 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 5.592e-103
Identity = 170/386 (44.04%), Postives = 265/386 (68.65%), Query Frame = -1
Query:    1 DSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKD--EDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY-GNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1149
            D +  +D+  +L +LEAL++A ++LQ +    +  +  + +++LL L  E+D++ S +P LS L   L  LK L + ++ ++GY L+S L+R+++ Y I +V  +IE+E+QA +D+  + +L+  +++   D  ED+L R+L  FE R+SQGF+ + Q+ VL++K FS+L++++CD     +IRE+AA CV  L+RFN+DVFVG V MG  +Q+L+   S  S++VLC LI  I++P +D I   GE+P+I++L  S+DLS++V   +C+ EI YFGRKE +EAM+  GLIEKL+ELQRS  G DL    ++ GN +      +  KK     PFASCVARFA+Q+EVGEGL ++E++  K EIL +VREASV++AEAA+++AEVL
Sbjct:    2 DQTQVKDDRSLLYMLEALRKASKDLQNNSIFIT-HNPQTIMESLLNLRNEADALFSTNPNLSKLCNLLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECVRNLVRIIQETESDSEEDKL-RVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRPMKIREQAALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLIDEIELEGEIPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRSTCGDDLAERDQFNGNVSNAEVCAEIVKK----RPFASCVARFALQVEVGEGLERKERKELKREILRRVREASVSEAEAASVVAEVL 381          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: N0DKR4_LOTJA (Uncharacterized protein OS=Lotus japonicus GN=LjTDF-5 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 6.139e-103
Identity = 193/375 (51.47%), Postives = 250/375 (66.67%), Query Frame = -1
Query:    1 PGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1125
            P VL++L+ALKQA  ++Q   +  S   + + I ALL+L T     +S D   S LS HL  LK L+++L   +G  +RSFLTR +S +SISRVA SIE+E+QA +DR +  +L  +L +   D   L  LL+Q   RV+QGF+ E Q+ VL  K FS L+++L D  C + +RE A   +AALIRFNKDVFVGQV MG T++AL+ M S  S+ VLC L+  I+SPFVD I  NGE+PKI+ LL S DL + V+    +LEIGYFGRKEA+EAM+  G++EKLVELQR E  G   GM                      HPFASCVA FAVQL+VGEGLR+REKRA KPEILE+VR+AS++DAE+ATI+AEVL
Sbjct:   22 PQVLQVLQALKQASHDIQHSSSSSSDDHSPA-INALLQLHT----TLSTD---SPLSHHLHRLKTLLDSLHNAKG--IRSFLTRPLSAHSISRVAASIEAELQAWIDRETTQTLSRSLTNN-HDLLLLLPLLTQLIDRVNQGFDREFQNLVLTMKLFSSLESLLFDEKCQQPVREHAGMAIAALIRFNKDVFVGQVLMGPTVRALVSMASVDSLDVLCSLVKSIRSPFVDEIESNGEIPKIIALLGSDDLQLTVLAVEVVLEIGYFGRKEAIEAMMKEGVVEKLVELQRLEVEGGGGGM---------------------RHPFASCVAMFAVQLDVGEGLRQREKRALKPEILERVRKASLSDAESATIVAEVL 364          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7JFF7_MEDTR6.511e-10750.27Uncharacterized protein OS=Medicago truncatula GN=... [more]
I3S930_MEDTR6.653e-10750.27Uncharacterized protein OS=Medicago truncatula PE=... [more]
A0A0D2TEJ9_GOSRA3.087e-10646.75Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067KBP3_JATCU5.592e-10344.04Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
N0DKR4_LOTJA6.139e-10351.47Uncharacterized protein OS=Lotus japonicus GN=LjTD... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availablePANTHERPTHR35834FAMILY NOT NAMEDcoord: 3..385
NoneNo IPR availablePANTHERPTHR35834:SF2SUBFAMILY NOT NAMEDcoord: 3..385
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 103..301
e-value: 4.4E-12
score: 44.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 17..301

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018389 ID=g.arboreum_cottongen_reftransV1_0018389; Name=g.arboreum_cottongen_reftransV1_0018389; organism=Gossypium arboreum; type=contig; length=1230bp
CAAAACTTCAGCAATTATGGTAGCAGCCTCAGCATCATTAACAGATGCTT
CCCTAACTTTCTCCAGAATCTCTGGTTTAAAAGCCCTTTTCTCCCTTTTC
CTCAACCCTTCCCCAACCTCTAATTGCACTGCAAACCTTGCCACACAGCT
TGCAAATGGATGATTCTCTAAAAATTTCTTTTCTCTTTTCTTCCCCTCAC
TCACCTCATTCTCATTTCCATACTTTCCCATCCCTATCAAATCACCACCA
AATTCTGACCTCTGCAACTCCACAAGTTTTTCTATCAAACCCCCATTAAG
CATAGCTTCAACAGCTTCTTTACGTCCAAAGTAACCAATCTCAAGAATGC
AATTAAAGACCACCACTTTCATGCTCAAATCTTTGGATTCTAATAAAGTT
AAAATCTTGGGAAGTTCCCCATTACAGAGAATTACATCAACAAATGGAGA
TTTAATAAATGTAATCAACTCACATAGAACTTTTACGCTATGGGCTGATT
TCATCTCCAAAAGAGCTTGAATTGTATCTCCCATATTCACTTGGCCGACG
AAGACATCCTTGTTGAATCGAATCAAAGCGGCTACACAAAACGCAGCTTT
TTCCCTGATCTGTTTTGAACAATTCGGGTCGCAAAGCACTGTTTGTAAAA
CCGAAAAGGCTTTCGATTTCAAGACTGAATCCTGCAACTCGGGATTAAAC
CCTTGTGATACTCGGTGTTCAAACTGACTCAGTAACCGAGATAACTCGTC
CTCGTCCTTCCAGGGATCTTTCAAAGCATTTATCAAGCTATCGATACTCC
CACGATCCATCAAGGCTTGAATCTCGGACTCGATCGAGCCAGCAACTCGA
GAGATGGAATAAGTCGACACACGACGAGTCAAAAAACTCCTGAGACCATA
ACCACGATTCCTTTCTAGGGTTTCGACGAGGATCTTGAGCTCAGCCAAGT
GTCGGGAAAGAGTAGAAAGAAGTGGGTCTTTCGAGATGATCGAATCGGAC
TCGGTTTCAAGCTCGAGAAGAGCTTTAATTGGAGATGAGTTAGACTGAAC
CGATTTGTGAGTTGGATGAGCTTGTAACTCCTGGATTGCTTGTTTCAAAG
CTTCGAGAAGCTTCAGAACTCCAGGGTTGTCTTCTTTGGGCGATGAGTCT
TCCATTTTTTTGTTGCAGATGTAGATTTTCTTCTTTCACAGTTTACATAG
AAACAAACTACAATAGACTCTTGTTTTAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding