g.arboreum_cottongen_reftransV1_0019920, g.arboreum_cottongen_reftransV1_0019920 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: V7BL52_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G062600g PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 5.607e-92 Identity = 143/226 (63.27%), Postives = 174/226 (76.99%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC------STSMNLKTGGELV---SQMKRKQGVGRA-GCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV +SHTGPCLC +TS+NLK+GG++V + M RK + G ++L SSF+D +WR+ + K RK R + +VNELGGQYEE+F DVKTQ+LNYFTYKAVRTVL QLYEMNPPKYTWFY +V +N+P DGK F+R LGKE +ELAERVM+TRLHLYGKW+KKC+HA+IYKEISDENLELMRERL ETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVVGSSVMESHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHLLKHGVGTMKLSSSFIDPGREWRVFVSR-----SCKRQRKDRRVAIVNELGGQYEESFEDVKTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVVSNKPGDGKRFIRSLGKEQRELAERVMVTRLHLYGKWVKKCNHAEIYKEISDENLELMRERLMETVIWPSDDTNTEKIG 221
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A059DAB1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03687 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 6.846e-92 Identity = 147/229 (64.19%), Postives = 177/229 (77.29%), Query Frame = 3 Query: 213 MVGAISVVDS-----HTGPCLC----STSMNLKTGGELVS----QMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK-----KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV S HT PCLC +SM+LK+GG+LVS + RKQ + R G LELGSSF+DS +DWRL +K I G + K RK + VV+EL GQYE++F DVKTQ+LNYFTYKAVRTVL+QLYEMNP +Y WFY++VA N+P DGK F++ILGKE +LAERVMITRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WPSDD NT+ IG Sbjct: 1 MVGALSVVGSSVVESHTSPCLCLDSLPSSMSLKSGGDLVSLHRSALGRKQ-LSRPGSLELGSSFLDSWNDWRLKAKAISGNTRRHRCFSKKPRKHQNFKVVSELAGQYEDSFEDVKTQILNYFTYKAVRTVLSQLYEMNPTQYRWFYEFVATNKPGDGKRFIKILGKEKHDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDMNTEKIG 228
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: W9S718_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015295 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 2.133e-88 Identity = 140/223 (62.78%), Postives = 173/223 (77.58%), Query Frame = 3 Query: 213 MVGAISVVDS-----HTGPCLC-----STSMNLKTGGELVSQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKK--SSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV S HT PCLC +T+++ K+ G+LV ++RKQ G EL SSF+DS D RL++K +PG+V + +K R L++V+ELGGQYE++F DVK Q+LNYFTYKAVRTVL QLYEMNP +Y WFY +V +N+P DGK F+RILGKE ELAERVM+TRLHLYGKW KKC+HA+IYKEISDENLELMRERL ETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVVGSSVVDSHTCPCLCVDALPTTNLSFKSVGDLV--LQRKQIAKPVGSSELSSSFIDSGLDRRLAAKALPGIVGRSPGKQKKNRRLMIVSELGGQYEDSFEDVKRQILNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVVSNRPGDGKRFIRILGKERHELAERVMVTRLHLYGKWAKKCNHAEIYKEISDENLELMRERLIETVIWPSDDTNTEKIG 221
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613600 PE=4 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.048e-87 Identity = 141/229 (61.57%), Postives = 171/229 (74.67%), Query Frame = 3 Query: 213 MVGAIS-----VVDSHTGPCLC-----STSMNLKTGGELVSQMKRKQGVGRAGC-----LELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKA---RTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+S VVDSH+ PCLC +TS+NLK+ G+ V MK+K GR L+L SSFVD+ +W LS MI +SSRK R L+VV+ELGGQYE+ F DVK Q+LNYFTYKAVRTV+ QLYEMNPP+Y W Y +V N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW+KKC+HA+IY+EISDEN+ELMRERL +TV+WPSDD+NT+ IG Sbjct: 1 MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFV--MKKKYSKGRQRLPKPKHLDLSSSFVDNGREWLLSVDMI-----NRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A078C1L3_BRANA (BnaC03g09800D protein OS=Brassica napus GN=BnaC03g09800D PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 5.478e-85 Identity = 134/218 (61.47%), Postives = 167/218 (76.61%), Query Frame = 3 Query: 213 MVGAI-----SVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGV-GRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNE-LGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+ SV+DS + PCLC L + + K+ + G + LELGSSF S +R+SSK +P + +++S +K L++VNE + G Y++TFGDVKTQL+NYFTYKAVRTVL QLYEMNPP+YTWFY YV +N+PT+GK FLR LGKE+QELAERVMITRLHLYGKWIKKCDH +IY++ISDENL LMRERL ETV+WPSDDSN++ IG Sbjct: 1 MVGALFVIGSSVMDSPSVPCLC-----------LDAHTRSKKKIHGSSRKLELGSSFTGSSIVFRISSKRVPRIASRRSKKK---LLIVNEDVAGNYDDTFGDVKTQLINYFTYKAVRTVLHQLYEMNPPQYTWFYNYVVSNRPTEGKRFLRKLGKESQELAERVMITRLHLYGKWIKKCDHGKIYQDISDENLALMRERLMETVIWPSDDSNSEVIG 204 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019920 ID=g.arboreum_cottongen_reftransV1_0019920; Name=g.arboreum_cottongen_reftransV1_0019920; organism=Gossypium arboreum; type=contig; length=1033bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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