g.arboreum_cottongen_reftransV1_0019920, g.arboreum_cottongen_reftransV1_0019920 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019920
Unique Nameg.arboreum_cottongen_reftransV1_0019920
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1033
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0019920:1..1033 .
Chr11:80107459..80111345 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: V7BL52_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G062600g PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 5.607e-92
Identity = 143/226 (63.27%), Postives = 174/226 (76.99%), Query Frame = 3
Query:  213 MVGAISVV-----DSHTGPCLC------STSMNLKTGGELV---SQMKRKQGVGRA-GCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845
            MVGA+SVV     +SHTGPCLC      +TS+NLK+GG++V   + M RK  +    G ++L SSF+D   +WR+         + K  RK R + +VNELGGQYEE+F DVKTQ+LNYFTYKAVRTVL QLYEMNPPKYTWFY +V +N+P DGK F+R LGKE +ELAERVM+TRLHLYGKW+KKC+HA+IYKEISDENLELMRERL ETV+WPSDD+NT+ IG
Sbjct:    1 MVGALSVVGSSVMESHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHLLKHGVGTMKLSSSFIDPGREWRVFVSR-----SCKRQRKDRRVAIVNELGGQYEESFEDVKTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVVSNKPGDGKRFIRSLGKEQRELAERVMVTRLHLYGKWVKKCNHAEIYKEISDENLELMRERLMETVIWPSDDTNTEKIG 221          
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A059DAB1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03687 PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 6.846e-92
Identity = 147/229 (64.19%), Postives = 177/229 (77.29%), Query Frame = 3
Query:  213 MVGAISVVDS-----HTGPCLC----STSMNLKTGGELVS----QMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK-----KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845
            MVGA+SVV S     HT PCLC     +SM+LK+GG+LVS     + RKQ + R G LELGSSF+DS +DWRL +K I G   +     K  RK +   VV+EL GQYE++F DVKTQ+LNYFTYKAVRTVL+QLYEMNP +Y WFY++VA N+P DGK F++ILGKE  +LAERVMITRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WPSDD NT+ IG
Sbjct:    1 MVGALSVVGSSVVESHTSPCLCLDSLPSSMSLKSGGDLVSLHRSALGRKQ-LSRPGSLELGSSFLDSWNDWRLKAKAISGNTRRHRCFSKKPRKHQNFKVVSELAGQYEDSFEDVKTQILNYFTYKAVRTVLSQLYEMNPTQYRWFYEFVATNKPGDGKRFIKILGKEKHDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDMNTEKIG 228          
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: W9S718_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015295 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.133e-88
Identity = 140/223 (62.78%), Postives = 173/223 (77.58%), Query Frame = 3
Query:  213 MVGAISVVDS-----HTGPCLC-----STSMNLKTGGELVSQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKK--SSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845
            MVGA+SVV S     HT PCLC     +T+++ K+ G+LV  ++RKQ     G  EL SSF+DS  D RL++K +PG+V +     +K R L++V+ELGGQYE++F DVK Q+LNYFTYKAVRTVL QLYEMNP +Y WFY +V +N+P DGK F+RILGKE  ELAERVM+TRLHLYGKW KKC+HA+IYKEISDENLELMRERL ETV+WPSDD+NT+ IG
Sbjct:    1 MVGALSVVGSSVVDSHTCPCLCVDALPTTNLSFKSVGDLV--LQRKQIAKPVGSSELSSSFIDSGLDRRLAAKALPGIVGRSPGKQKKNRRLMIVSELGGQYEDSFEDVKRQILNYFTYKAVRTVLNQLYEMNPTQYRWFYDFVVSNRPGDGKRFIRILGKERHELAERVMVTRLHLYGKWAKKCNHAEIYKEISDENLELMRERLIETVIWPSDDTNTEKIG 221          
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-87
Identity = 141/229 (61.57%), Postives = 171/229 (74.67%), Query Frame = 3
Query:  213 MVGAIS-----VVDSHTGPCLC-----STSMNLKTGGELVSQMKRKQGVGRAGC-----LELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKA---RTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845
            MVGA+S     VVDSH+ PCLC     +TS+NLK+ G+ V  MK+K   GR        L+L SSFVD+  +W LS  MI      +SSRK    R L+VV+ELGGQYE+ F DVK Q+LNYFTYKAVRTV+ QLYEMNPP+Y W Y +V  N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW+KKC+HA+IY+EISDEN+ELMRERL +TV+WPSDD+NT+ IG
Sbjct:    1 MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFV--MKKKYSKGRQRLPKPKHLDLSSSFVDNGREWLLSVDMI-----NRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222          
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A078C1L3_BRANA (BnaC03g09800D protein OS=Brassica napus GN=BnaC03g09800D PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.478e-85
Identity = 134/218 (61.47%), Postives = 167/218 (76.61%), Query Frame = 3
Query:  213 MVGAI-----SVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGV-GRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNE-LGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845
            MVGA+     SV+DS + PCLC           L +  + K+ + G +  LELGSSF  S   +R+SSK +P + +++S +K   L++VNE + G Y++TFGDVKTQL+NYFTYKAVRTVL QLYEMNPP+YTWFY YV +N+PT+GK FLR LGKE+QELAERVMITRLHLYGKWIKKCDH +IY++ISDENL LMRERL ETV+WPSDDSN++ IG
Sbjct:    1 MVGALFVIGSSVMDSPSVPCLC-----------LDAHTRSKKKIHGSSRKLELGSSFTGSSIVFRISSKRVPRIASRRSKKK---LLIVNEDVAGNYDDTFGDVKTQLINYFTYKAVRTVLHQLYEMNPPQYTWFYNYVVSNRPTEGKRFLRKLGKESQELAERVMITRLHLYGKWIKKCDHGKIYQDISDENLALMRERLMETVIWPSDDSNSEVIG 204          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7BL52_PHAVU5.607e-9263.27Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A059DAB1_EUCGR6.846e-9264.19Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
W9S718_9ROSA2.133e-8862.78Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A0A0LXJ9_CUCSA1.048e-8761.57Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A078C1L3_BRANA5.478e-8561.47BnaC03g09800D protein OS=Brassica napus GN=BnaC03g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003435Chaperonin-like RbcXPFAMPF02341RcbXcoord: 98..197
e-value: 1.9E-19
score: 69.9
NoneNo IPR availablePANTHERPTHR33791:SF4CHAPERONIN-LIKE RBCX PROTEINcoord: 45..211
NoneNo IPR availablePANTHERPTHR33791FAMILY NOT NAMEDcoord: 45..211
coord: 1..25
NoneNo IPR availablePANTHERPTHR33791:SF4CHAPERONIN-LIKE RBCX PROTEINcoord: 1..25
NoneNo IPR availableSUPERFAMILY158615RbcX-likecoord: 89..208

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019920 ID=g.arboreum_cottongen_reftransV1_0019920; Name=g.arboreum_cottongen_reftransV1_0019920; organism=Gossypium arboreum; type=contig; length=1033bp
GAGAGCATTATGGACCTCAAAAAACTGTCTGGTTAAGATTCACCTTCCCT
TTAAATGCACGCCACATTCATCACACGTTCCCCTTTTGCATTTTTGTTTT
TTCTTTTTGGTTTCCCCCAAATCTGTGCTTACTTGACCACGAATCTTTGA
CTTCAATCTTGAAGAAAAAAGCAAAGCTAAGCCCTGATCAGGTTGTGAGT
TGAGGAAGAAAGATGGTGGGGGCTATATCGGTGGTGGACTCTCACACTGG
TCCATGTTTGTGCTCCACCAGCATGAACTTGAAAACTGGAGGGGAATTGG
TTTCGCAAATGAAGAGGAAACAAGGGGTGGGAAGGGCAGGGTGTTTGGAA
TTAGGCAGCTCATTTGTAGATTCATGCCATGATTGGAGGTTGTCTTCCAA
GATGATTCCTGGTGTTGTGAATAAGAAGAGTTCAAGGAAGGCCCGCACAC
TTGTGGTTGTGAATGAATTAGGAGGGCAGTATGAAGAAACTTTCGGAGAT
GTTAAAACGCAATTACTAAATTACTTCACATACAAAGCAGTGAGGACTGT
TCTTACTCAGCTCTACGAAATGAACCCACCAAAATATACTTGGTTTTATC
AGTATGTCGCAGCAAATCAGCCTACTGATGGCAAGAGTTTCTTACGTATC
CTTGGGAAGGAGAATCAAGAGCTTGCTGAAAGAGTGATGATAACACGACT
TCACCTATATGGGAAATGGATTAAGAAATGTGATCATGCTCAAATATACA
AAGAGATTTCGGATGAGAACCTGGAATTGATGCGGGAACGGCTTAAGGAA
ACTGTGGTTTGGCCCTCAGATGATTCAAACACTGATACGATTGGGTGAGC
CCTCAGGGATTGATTGCATTTCCAATTTTTCTTCTCTTATTACTTAGCTT
TAGAATCACCTTGTTTGGTTTGGTCCCAATGAATGTATGTATATTTGGTT
TTCGACCAACTAAGTATAAGCTTTATTGTAAACTGTACATTATGAATTGC
TTGCTTATAAATTGCCATTAAAACCTATTCATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003435Chaperonin_RcbX