g.arboreum_cottongen_reftransV1_0019920, g.arboreum_cottongen_reftransV1_0019920 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: C6T2W6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 1.539e-94 Identity = 147/227 (64.76%), Postives = 178/227 (78.41%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELVSQ--MKRKQGVGR--AGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +TS+NLK+GG+++ + M RK+ + + G ++L SSFVD +WRL V+K K RK R + +VNELGGQYE+TF DVK Q+LNYFTYKAVRTVL QLYEMNPPKYTWFY +VA+N+P DGK F+R LGKE QELAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKRNLVKHGGGTMKLSSSFVDPGREWRL-------FVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKAQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDTNTEKIG 220
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: I1N050_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 1.661e-94 Identity = 147/227 (64.76%), Postives = 177/227 (77.97%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELVSQ--MKRKQGVGR--AGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +TS+NLK+GG+++ + M RK + + G ++L SSFVD +WRL V+K K RK R + +VNELGGQYE+TF DVK Q+LNYFTYKAVRTVL QLYEMNPPKYTWFY +VA+N+P DGK F+R LGKE QELAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKHNLVKHGGGTMKLSSSFVDPGREWRL-------FVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKAQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDTNTEKIG 220
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0B2REG1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022590 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 1.661e-94 Identity = 147/227 (64.76%), Postives = 177/227 (77.97%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELVSQ--MKRKQGVGR--AGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +TS+NLK+GG+++ + M RK + + G ++L SSFVD +WRL V+K K RK R + +VNELGGQYE+TF DVK Q+LNYFTYKAVRTVL QLYEMNPPKYTWFY +VA+N+P DGK F+R LGKE QELAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKHNLVKHGGGTMKLSSSFVDPGREWRL-------FVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKAQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDTNTEKIG 220
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0B2P2T8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028471 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 6.124e-94 Identity = 149/232 (64.22%), Postives = 177/232 (76.29%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC------STSMNLKTGGELV---SQMKRKQ-----GVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +TS+NLK+GG++V + M RK G G ++L SSFVD +WRL V+K K RK R + +VNELGGQYE+TF DVKTQ+LNYFTYKAVRTVL QLYEMNPPKYTWFY +VA+N+P DGK F+R LGKE QELAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WP+DD+NT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHNLVKHGGGGGTTMKLSSSFVDPGREWRL-------FVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPTDDTNTEKIG 225
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: C6TEV2_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 6.124e-94 Identity = 149/232 (64.22%), Postives = 177/232 (76.29%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC------STSMNLKTGGELV---SQMKRKQ-----GVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +TS+NLK+GG++V + M RK G G ++L SSFVD +WRL V+K K RK R + +VNELGGQYE+TF DVKTQ+LNYFTYKAVRTVL QLYEMNPPKYTWFY +VA+N+P DGK F+R LGKE QELAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERL ETV+WP+DD+NT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHNLVKHGGGGGTTMKLSSSFVDPGREWRL-------FVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPTDDTNTEKIG 225
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A067FCU1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027198mg PE=4 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 7.864e-94 Identity = 149/226 (65.93%), Postives = 176/226 (77.88%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLCSTSM--NLKTGGELV----SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTL----VVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSH GPCLC ++ ++K GGELV S +KRK+ A LELGSSFVDS DWRLSSK+I +VN+ S ++ + V+VNE+GGQYE++F DVK Q+ NYFTYKAVRTVL QLYEMNP +Y WFY +VA N+P DGK F+RILGK Q+LAERVMITRLHLYGKW+KKCDHAQ+YK ISDENLELMRERL ETV+WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: F6GU42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02200 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 9.012e-93 Identity = 145/226 (64.16%), Postives = 177/226 (78.32%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGG-ELVSQMKR--KQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSR--KARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 M GA+SVV D T PCLC S++M++K GG +LV Q K+ + R G +E+GSSFVDS H+WRL +K++ +VNK S R KAR L+VV+E+ GQYE++F DVKTQ+LNYFTYKAVRTV+ QLYEMNP +Y W Y +VAAN+P +GK F+RIL KE QELAERVM+TRLHLYGKWIKKC+HA+IYKEISDENLELMRERL ETV WPSDD+NT+ IG Sbjct: 1 MSGALSVVGSSIFDPKTCPCLCLDALPSSNMSVKAGGGDLVWQRNSVGKKRLSRPGTVEMGSSFVDSWHEWRLEAKVLSSIVNKSSRRQHKARRLLVVSEVAGQYEDSFEDVKTQILNYFTYKAVRTVMHQLYEMNPTQYRWLYDFVAANKPGEGKRFIRILVKEKQELAERVMVTRLHLYGKWIKKCNHAEIYKEISDENLELMRERLMETVKWPSDDTNTEKIG 226
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: M5X2A8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011093mg PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 1.180e-92 Identity = 147/226 (65.04%), Postives = 178/226 (78.76%), Query Frame = 3 Query: 213 MVGAISVVDS-----HTGPCLC-----STSMNLKTGGELVSQ---MKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKS--SRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV S HT PCLC +T+MNLK+GGELV Q M +K+ V + G LEL SSF+DS HD RLS K +PG++ KS RK R V+VNELGGQYE++F DVK Q+LNYFTYKAVRTV++QLYEMNP +Y WFY +VA ++P DGK F+R LGKE ELAERVM+TRLHLYGKW+KKC+HA+IY++ISD+NLELMRERL ETV+WPSDD NT+ IG Sbjct: 1 MVGALSVVGSSVVDSHTSPCLCLDALPTTAMNLKSGGELVLQRNSMAKKRLV-KPGSLELSSSFIDSGHDMRLSMKALPGIIVNKSMRKRKNRGFVIVNELGGQYEDSFEDVKAQMLNYFTYKAVRTVMSQLYEMNPTQYRWFYDFVATHKPGDGKRFIRTLGKERHELAERVMVTRLHLYGKWVKKCNHAEIYQQISDQNLELMRERLIETVIWPSDD-NTEKIG 224
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A067F578_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027198mg PE=4 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 1.882e-92 Identity = 149/226 (65.93%), Postives = 177/226 (78.32%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLCSTSM--NLKTGGELV----SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTL----VVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSH GPCLC ++ ++K GGELV S +KRK+ A LELGSSFVDS DWRLSSK+I +VN+ S ++ + V+VNE+GGQYE++F DVK Q+ NYFTYKAVRTVL QLYEMNP +Y WFY +VA N+P DGK F+RILGK+ Q+LAERVMITRLHLYGKW+KKCDHAQ+YK ISDENLELMRERL ETV+WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKK-QDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 225
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: I3T6I4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 4.326e-92 Identity = 147/227 (64.76%), Postives = 170/227 (74.89%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELV---SQMKRKQGV---GRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSHTGPCLC +T++NLK+GG++ S M +K + G +EL SSF +WRLS N K R+ R + +VNELGGQYEE F DVKTQ+LNYFT KAVRTVL QLYEMNPPKYTWFY +V +N+PTDGK FLR LGKE +ELAERVM+TRLHLY KW+KKCDHAQIYKEISDENLELMRERL ETV+WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVMDSHTGPCLCVDALPTTNVNLKSGGDVALCKSLMGKKHFLRSGGNGKTMELSSSFTGPGWEWRLSVSR-----NCKKQRRDRKMGIVNELGGQYEEGFDDVKTQMLNYFTVKAVRTVLQQLYEMNPPKYTWFYNFVVSNKPTDGKRFLRSLGKEQRELAERVMVTRLHLYSKWVKKCDHAQIYKEISDENLELMRERLMETVIWPSDDSNTERIG 222 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019920 ID=g.arboreum_cottongen_reftransV1_0019920; Name=g.arboreum_cottongen_reftransV1_0019920; organism=Gossypium arboreum; type=contig; length=1033bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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