g.arboreum_cottongen_reftransV1_0019920, g.arboreum_cottongen_reftransV1_0019920 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0D2RUX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128600 PE=4 SV=1) HSP 1 Score: 432.18 bits (1110), Expect = 1.414e-149 Identity = 206/211 (97.63%), Postives = 209/211 (99.05%), Query Frame = 3 Query: 213 MVGAISVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAG LELGSSFVDSCHDWRLSSKMIPGVV+KKSSRKARTLVVVNELGGQYEETFGDVKTQL+NYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERL ETVVWPSDDSNTDTIG Sbjct: 1 MVGALSVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAGWLELGSSFVDSCHDWRLSSKMIPGVVDKKSSRKARTLVVVNELGGQYEETFGDVKTQLVNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLMETVVWPSDDSNTDTIG 211
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0D2SWF1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128600 PE=4 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 4.071e-119 Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 3 Query: 213 MVGAISVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEI 758 MVGA+SVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAG LELGSSFVDSCHDWRLSSKMIPGVV+KKSSRKARTLVVVNELGGQYEETFGDVKTQL+NYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIK +++ I Sbjct: 1 MVGALSVVDSHTGPCLCSTSMNLKTGGELVSQMKRKQGVGRAGWLELGSSFVDSCHDWRLSSKMIPGVVDKKSSRKARTLVVVNELGGQYEETFGDVKTQLVNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKVMKRVNMFQSI 182
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0B0MJD6_GOSAR (Tumor D53 OS=Gossypium arboreum GN=F383_19023 PE=4 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 6.468e-115 Identity = 171/227 (75.33%), Postives = 188/227 (82.82%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELVSQ----MKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKS--SRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+S+V DS GPCLC ST+MNLKTG ELV Q MKRK + R GCLEL SSFVDS HD RLSSK+IPG+++K S RK R L VV+ LGGQYE+TF DVKTQLLNYFTYKAVRTVL QLYEMNPP+YTWFYQ+VAAN+P++GK FLRILGKE QELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERL ETVVWPSDD+NT+ IG Sbjct: 1 MVGALSMVGSSVMDSQAGPCLCLDALPSTNMNLKTGAELVMQRRHSMKRKHAMARPGCLELSSSFVDSWHDSRLSSKVIPGIMSKNSRKQRKDRKLAVVDNLGGQYEDTFSDVKTQLLNYFTYKAVRTVLNQLYEMNPPQYTWFYQFVAANKPSEGKRFLRILGKERQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLIETVVWPSDDTNTEKIG 227
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A0D2TFE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G073300 PE=4 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 2.809e-114 Identity = 171/227 (75.33%), Postives = 189/227 (83.26%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLC-----STSMNLKTGGELVSQ----MKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+S+V DS TGPCLC ST+MNLKTG EL Q MKRK + R GCLEL SSFVDS HD RLSSK+IPG+++K + RK R LVVV+ LGGQYE+TF DVKTQLLNYFTYKAVRTVL QLYEMNPP+YTWFYQ+VAAN+P++GK FLRILGKE QELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERL ETVVWPSDD+NT+ IG Sbjct: 1 MVGALSMVGSSVMDSQTGPCLCLDALPSTNMNLKTGAELGMQRRHSMKRKHAMARPGCLELSSSFVDSWHDSRLSSKVIPGIMSKNLRKQRKDRKLVVVDNLGGQYEDTFSDVKTQLLNYFTYKAVRTVLNQLYEMNPPQYTWFYQFVAANKPSEGKRFLRILGKERQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLIETVVWPSDDTNTEKIG 227
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A061GTI0_THECC (Chaperonin-like RbcX protein isoform 1 OS=Theobroma cacao GN=TCM_040706 PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 7.534e-114 Identity = 170/226 (75.22%), Postives = 189/226 (83.63%), Query Frame = 3 Query: 213 MVGAISV-----VDSHTGPCLC-----STSMNLKTGGELVSQ---MKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNK--KSSRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SV +DSHTGPCLC ST+MNLK GGELV Q MKRK V R G LELGSSFVDS DWRLS KMIPG+VN+ + RK R LVVVNE+ GQYE++F DVKTQLLNYFTYKAVRTVL QLYEMNPP+YTWFYQ+VA N+P++GK F+RILGKE QELAERVMITRLHLYGKW+KKCDHAQIYKEISDENLELMRERL +TVVWPSDD+NT+ IG Sbjct: 1 MVGALSVMGSSVIDSHTGPCLCLDALPSTNMNLKGGGELVLQRNSMKRKH-VARPGSLELGSSFVDSWQDWRLSGKMIPGIVNRCSRKQRKDRRLVVVNEVAGQYEDSFEDVKTQLLNYFTYKAVRTVLNQLYEMNPPQYTWFYQFVATNKPSEGKRFIRILGKERQELAERVMITRLHLYGKWVKKCDHAQIYKEISDENLELMRERLMDTVVWPSDDTNTEKIG 225
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: B9HNW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05790g PE=4 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 9.997e-106 Identity = 159/221 (71.95%), Postives = 181/221 (81.90%), Query Frame = 3 Query: 213 MVGAISVVDSHTGPCLC-----STSMNLKTGGELV---SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKS--SRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVVD HT PCLC +T++ LK+ G+LV S MKRKQ + R G LELGSSFVDS HDWRLSSK I G+V+K S RK R LVVVNELGGQYE++F DVK QL+NYFTYKAVRTVL QLYEMNP +YTW Y +VA N+P DGK F+R LGKE Q+LAERVM+TRLHLYGKW+KKCDHA+IYKEISDENLELMRERL ETV WPSDD+NT+ IG Sbjct: 1 MVGALSVVDPHTSPCLCLDALPTTNIGLKSSGDLVLQRSSMKRKQ-LTRPGSLELGSSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVVVNELGGQYEDSFEDVKMQLINYFTYKAVRTVLNQLYEMNPTQYTWLYNFVAQNKPGDGKRFIRSLGKEKQDLAERVMVTRLHLYGKWVKKCDHAEIYKEISDENLELMRERLMETVKWPSDDTNTEKIG 220
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: B9GF05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2) HSP 1 Score: 315.464 bits (807), Expect = 1.506e-103 Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 3 Query: 213 MVGAISV-----VDSHTGPCLC-----STSMNLKTGGELV---SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKS--SRKARTLVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SV VD HT PCLC +T++ LK G+L S +KRKQ + R G LELGSSFVDS HDWRLSSK I G+V+K S RK R LV+V+EL GQYE++F DVKTQLLNYFTYKAVRTVL QLYEMNP +YTWFY +VA N+P DGK FLR L KE Q+LAERVM+TRLHLYGKWIKKCDHA+IYKEISDENLELMRERLKETV+WPSDD+NT+ IG Sbjct: 1 MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQRSSIKRKQ-LTRPGSLELGSSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVIVSELAGQYEDSFEDVKTQLLNYFTYKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVKEKQDLAERVMVTRLHLYGKWIKKCDHAEIYKEISDENLELMRERLKETVIWPSDDTNTEKIG 225
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A067JQ23_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25926 PE=4 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 2.348e-96 Identity = 154/226 (68.14%), Postives = 180/226 (79.65%), Query Frame = 3 Query: 213 MVGAISVVDS-----HTGPCLC-----STSMNLKTGGELVSQ---MKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKART--LVVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV S HT PCLC +++MNLK GELV Q MKRKQ + R G LELGSSFVDS +DWRLS+K I G+VNK S RK R +VVNELGGQYE++F DVK Q+LNYFTYKA RTVL QLYEMNP +Y W Y +VA+N+P DGK F+R L KE Q+LAERVM+TRLHLYGKW+KKC+HA+IY+EISDENLELMRERLKET++WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVVDSHTSPCLCLDALPTSTMNLKHSGELVLQRNSMKRKQ-LKRPGSLELGSSFVDSWYDWRLSTKAISGIVNK-SRRKQRKDWRLVVNELGGQYEDSFEDVKMQILNYFTYKATRTVLNQLYEMNPTQYRWLYDFVASNKPADGKRFIRSLVKEKQDLAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLKETIIWPSDDSNTEKIG 224
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: V4TG73_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016574mg PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 3.476e-96 Identity = 150/226 (66.37%), Postives = 177/226 (78.32%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLCSTSM--NLKTGGELV----SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTL----VVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSH GPCLC ++ ++K GGELV S +KRK+ A LELGSSFVDS DWRLSSK+I +VN+ S ++ + V+VNE+GGQYE++F DVK Q+ NYFTYKAVRTVL QLYEMNP +Y WFY +VA N+P DGK F+RILGKE Q+LAERVMITRLHLYGKW+KKCDHAQ+YK ISDENLELMRERL ETV+WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKQKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Match: A0A067FDI5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027198mg PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 6.568e-95 Identity = 150/226 (66.37%), Postives = 177/226 (78.32%), Query Frame = 3 Query: 213 MVGAISVV-----DSHTGPCLCSTSM--NLKTGGELV----SQMKRKQGVGRAGCLELGSSFVDSCHDWRLSSKMIPGVVNKKSSRKARTL----VVVNELGGQYEETFGDVKTQLLNYFTYKAVRTVLTQLYEMNPPKYTWFYQYVAANQPTDGKSFLRILGKENQELAERVMITRLHLYGKWIKKCDHAQIYKEISDENLELMRERLKETVVWPSDDSNTDTIG 845 MVGA+SVV DSH GPCLC ++ ++K GGELV S +KRK+ A LELGSSFVDS DWRLSSK+I +VN+ S ++ + V+VNE+GGQYE++F DVK Q+ NYFTYKAVRTVL QLYEMNP +Y WFY +VA N+P DGK F+RILGKE Q+LAERVMITRLHLYGKW+KKCDHAQ+YK ISDENLELMRERL ETV+WPSDDSNT+ IG Sbjct: 1 MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019920 ID=g.arboreum_cottongen_reftransV1_0019920; Name=g.arboreum_cottongen_reftransV1_0019920; organism=Gossypium arboreum; type=contig; length=1033bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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