g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: I1JDF1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 394.43 bits (1012), Expect = 1.206e-129 Identity = 186/207 (89.86%), Postives = 198/207 (95.65%), Query Frame = -1 Query: 1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621 LR +GKEKGWCPY+LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQT+EGA RNL+R+ QEID+FKATDA RLRAEYNRLVEGLALRG+LP TD WL+NPALPDDILKEAVPGNIRRAEHF+HVLRRLVQYL GRLDTENVEKESPVSFV SI +HAGIDQK+LKFCYDRLHSLM+TL Sbjct: 180 LRAYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLSRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPATDAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVSILNHAGIDQKSLKFCYDRLHSLMMTL 386
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: F6HQ82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00060 PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 2.585e-129 Identity = 186/207 (89.86%), Postives = 198/207 (95.65%), Query Frame = -1 Query: 1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621 LR FG++KGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ+ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL++++QEI+RFKATDA RLRAEYNRLVEGLA RGNLPI+D WL+NPALPDDILKEAVPGNIRRAEHFL VLRRLVQYL GRL+TENVEKE PV+FVASINS AGIDQK LKFCYDRLHSLMLTL Sbjct: 180 LRAFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKMAQEINRFKATDAGRLRAEYNRLVEGLAQRGNLPISDTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLHGRLETENVEKEGPVAFVASINSQAGIDQKMLKFCYDRLHSLMLTL 386
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D3DIM4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=ATXPD PE=4 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 1.321e-126 Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = -1 Query: 1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621 LR FGK +GWCPYFLARHMVQFANV+VYSYQYLLDPKVAGIISKE+QKESV+VFDEAHNIDNVCIEALSVSVRR TLEGA RNLN+I QEIDRFKATDA RLRAEYNRL+EGLALRG+L TD WL+NPALP+DILKEAVPGNIRRAEHF+HVLRRL+QYL GRLDTENVEKESPVSFV+S+NS AGI+QKTLKFCYDRLHSLM+TL Sbjct: 180 LRAFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVIVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLIEGLALRGDLSGTDQWLANPALPNDILKEAVPGNIRRAEHFVHVLRRLLQYLGGRLDTENVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLHSLMMTL 386
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A072VA92_MEDTR (DNA repair helicase (Rad3) OS=Medicago truncatula GN=MTR_2g084735 PE=4 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 1.558e-126 Identity = 182/207 (87.92%), Postives = 195/207 (94.20%), Query Frame = -1 Query: 1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621 LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVA IISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQT++GA RN+NR+ QEID+FKATDA RLRAEYNRLVEGLALRG+LP D WL+NPALPDDILKEAVPGNIR+AEHF+ VLRRLVQYL GRL+TENVEKE+PVSFV SI +HAGIDQKTLKFCYDRLHSLM+TL Sbjct: 180 LRTFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAAIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTVDGARRNINRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPAADGWLANPALPDDILKEAVPGNIRKAEHFIQVLRRLVQYLEGRLETENVEKENPVSFVFSILNHAGIDQKTLKFCYDRLHSLMMTL 386
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A068U4Y2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00016043001 PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 1.777e-126 Identity = 182/207 (87.92%), Postives = 195/207 (94.20%), Query Frame = -1 Query: 1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621 LR +GK KGWCPYFLARHMVQ ANVVVYSYQYLLDPKVAGIISKEMQ+ESVVVFDEAHNIDNVCIEALSVSVR QTLEGATRN+NR+SQEIDRFKATDA RLRAEYNRLVEGLALRG+LP +D WL+NPALP+DILKEAVPGNIRRAEHFL VLRRLVQY+RGRL TENVEKE PV+FVAS+N+ AGIDQK L+FCYDRLHSLMLTL Sbjct: 180 LRAYGKLKGWCPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRMQTLEGATRNINRMSQEIDRFKATDAGRLRAEYNRLVEGLALRGDLPASDAWLANPALPNDILKEAVPGNIRRAEHFLSVLRRLVQYIRGRLQTENVEKEGPVTFVASVNTQAGIDQKMLRFCYDRLHSLMLTL 386
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROPE (Regulator of telomere elongation helicase 1 homolog OS=Drosophila persimilis GN=GL14463 PE=3 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 2.135e-9 Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1 Query: 361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609 G++ CPY+ ++ +V A++ Y YLLDPK E+ ++++ DEAHNI+ +C E+ SV +R + A ++ I Sbjct: 203 GQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 284
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROPS (Regulator of telomere elongation helicase 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA17940 PE=3 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 2.155e-9 Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1 Query: 361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609 G++ CPY+ ++ +V A++ Y YLLDPK E+ ++++ DEAHNI+ +C E+ SV +R + A ++ I Sbjct: 203 GQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 284
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_RAT (Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 3.360e-9 Identity = 29/89 (32.58%), Postives = 53/89 (59.55%), Query Frame = -1 Query: 343 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDR 609 G + CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + + + +N++ +E R Sbjct: 201 GSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQAR 288
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROAN (Regulator of telomere elongation helicase 1 homolog OS=Drosophila ananassae GN=GF20802 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 5.267e-9 Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1 Query: 361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609 G++ CPY+ ++ +V A++ Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV ++ + A ++ I Sbjct: 203 GQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHI 284
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: FANCJ_HUMAN (Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 5.530e-9 Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = -1 Query: 283 FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGL 612 GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++ E+ S SV L A L+ + + + D LRA L+ L Sbjct: 343 LGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVN--NNIRKKDHEPLRAVCCSLINWL 449 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015740 ID=g.arboreum_cottongen_reftransV1_0015740; Name=g.arboreum_cottongen_reftransV1_0015740; organism=Gossypium arboreum; type=contig; length=621bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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