g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0015740
Unique Name	g.arboreum_cottongen_reftransV1_0015740
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0015740:1..621 . Chr4:25995040..25996030 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2SCT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G136500 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.796e-143
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DXQ6_THECC (RAD3-like DNA-binding helicase protein isoform 2 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 4.420e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQ17_THECC (RAD3-like DNA-binding helicase protein isoform 4 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 5.844e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DPQ8_THECC (RAD3-like DNA-binding helicase protein isoform 3 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 3.903e-139
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2RVH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G081200 PE=4 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 1.688e-138
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RISQEIDRFKATD S LRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYL GRLDTENVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRISQEIDRFKATDTSILRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLSGRLDTENVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FRJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 9.284e-137
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FMZ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: V4VVL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018975mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FN33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 2.018e-134
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQV7_THECC (RAD3-like DNA-binding helicase protein isoform 1 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 7.529e-134
Identity = 200/229 (87.34%), Postives = 204/229 (89.08%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID----------------------RFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID                      RFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDSRKNLFHKLGPKPTYAVGLFHGRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 408

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROPE (Regulator of telomere elongation helicase 1 homolog OS=Drosophila persimilis GN=GL14463 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.135e-9
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1

Query:  361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609
            G++   CPY+ ++ +V  A++    Y YLLDPK       E+   ++++ DEAHNI+ +C E+ SV +R   +  A  ++  I
Sbjct:  203 GQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 284

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROPS (Regulator of telomere elongation helicase 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA17940 PE=3 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 2.155e-9
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1

Query:  361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609
            G++   CPY+ ++ +V  A++    Y YLLDPK       E+   ++++ DEAHNI+ +C E+ SV +R   +  A  ++  I
Sbjct:  203 GQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 284

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_RAT (Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 3.360e-9
Identity = 29/89 (32.58%), Postives = 53/89 (59.55%), Query Frame = -1

Query:  343 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDR 609
            G +   CPY+L+R++ Q A+++   Y YLLD K     + ++ K +VV+FDEAHN++ +C E+ S  +  + +      +N++ +E  R
Sbjct:  201 GSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQAR 288

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROAN (Regulator of telomere elongation helicase 1 homolog OS=Drosophila ananassae GN=GF20802 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.267e-9
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = -1

Query:  361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609
            G++   CPY+ ++ +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV ++   +  A  ++  I
Sbjct:  203 GQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHI 284

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: FANCJ_HUMAN (Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.530e-9
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = -1

Query:  283 FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGL 612
             GK+   CPY+ AR ++Q A+++   Y YLLD ++   +   + KE VV+ DEAHNI++   E+ S SV    L  A   L+ +    +  +  D   LRA    L+  L
Sbjct:  343 LGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVN--NNIRKKDHEPLRAVCCSLINWL 449

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SCT7_GOSRA	1.796e-143	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DXQ6_THECC	4.420e-140	96.62	RAD3-like DNA-binding helicase protein isoform 2 O...	[more]
A0A061DQ17_THECC	5.844e-140	96.62	RAD3-like DNA-binding helicase protein isoform 4 O...	[more]
A0A061DPQ8_THECC	3.903e-139	96.62	RAD3-like DNA-binding helicase protein isoform 3 O...	[more]
A0A0D2RVH9_GOSRA	1.688e-138	96.62	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067FRJ6_CITSI	9.284e-137	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FMZ8_CITSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4VVL3_9ROSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067FN33_CITSI	2.018e-134	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A061DQV7_THECC	7.529e-134	87.34	RAD3-like DNA-binding helicase protein isoform 1 O...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RTEL1_DROPE	2.135e-9	32.53	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_DROPS	2.155e-9	32.53	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_RAT	3.360e-9	32.58	Regulator of telomere elongation helicase 1 OS=Rat...	[more]
RTEL1_DROAN	5.267e-9	32.53	Regulator of telomere elongation helicase 1 homolo...	[more]
FANCJ_HUMAN	5.530e-9	33.64	Fanconi anemia group J protein OS=Homo sapiens GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	PANTHER	PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	coord: 1..207
None	No IPR available	PANTHER	PTHR11472:SF1	TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT	coord: 1..207
IPR001945	RAD3/XPD family	PRINTS	PR00852	XRODRMPGMNTD	coord: 154..175 score: 46.75 coord: 193..207 score: 37.27 coord: 94..113 score: 60.0 coord: 129..147 score: 70.68
IPR006554	Helicase-like, DEXD box c2 type	SMART	SM00488	deadxpd	coord: 1..101 e-value: 0.0047 score: -97.6
IPR010643	Helical and beta-bridge domain	PFAM	PF06777	HBB	coord: 91..207 e-value: 4.9E-22 score: 78.4
IPR010614	DEAD2	PFAM	PF06733	DEAD_2	coord: 4..77 e-value: 1.8E-27 score: 96.0
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 50..59
IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	PROSITE	PS51193	HELICASE_ATP_BIND_2	coord: 1..106 score: 17.915

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0015740 ID=g.arboreum_cottongen_reftransV1_0015740; Name=g.arboreum_cottongen_reftransV1_0015740; organism=Gossypium arboreum; type=contig; length=621bp
TAGAGTCAACATGAGTGAATGCAGACGATCATAACAGAACTTCAATGTTT
TCTGGTCAATTCCAGCATGACTATTGATAGATGCAACAAAGCTAACTGGG
CTTTCTTTCTCAACATTCTCCGTGTCTAGTCGGCCCCTTAGATACTGAAC
TAATCTACGTAGGACATGCAAAAAGTGCTCCGCTCGACGGATATTTCCAG
GCACAGCTTCCTTTAGAATATCATCAGGCAGTGCAGGATTTGAAAGCCAG
TTGTCAGTGATAGGTAGGTTTCCTCTCAATGCCAAACCCTCTACAAGTCG
GTTGTATTCAGCACGAAGTCGGCTTGCATCAGTGGCCTTGAACCTATCAA
TCTCTTGACTTATCCTATTAAGATTCCTTGTAGCTCCTTCAAGTGTCTGT
CTCCTAACACTAACACTAAGTGCTTCAATACACACATTGTCAATATTATG
GGCCTCATCAAACACCACAACAGACTCCTTCTGCATTTCCTTTGATATGA
TCCCAGCCACCTTTGGATCAAGTAAATACTGATAACTATAAACGACCACA
TTAGCAAACTGTACCATATGTCTCGCCAAAAAATACGGACACCACCCTTT
CTCCTTCCCAAACACCCTCAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001945	RAD3/XPD
IPR006554	Helicase-like_DEXD_c2
IPR010643	HBB
IPR010614	RAD3-like_helicase_DEAD
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004003	ATP-dependent DNA helicase activity
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008026	ATP-dependent helicase activity
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

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g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

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