g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0015740
Unique Name	g.arboreum_cottongen_reftransV1_0015740
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0015740:1..621 . Chr4:25995040..25996030 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2SCT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G136500 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.796e-143
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DXQ6_THECC (RAD3-like DNA-binding helicase protein isoform 2 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 4.420e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQ17_THECC (RAD3-like DNA-binding helicase protein isoform 4 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 5.844e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DPQ8_THECC (RAD3-like DNA-binding helicase protein isoform 3 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 3.903e-139
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2RVH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G081200 PE=4 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 1.688e-138
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RISQEIDRFKATD S LRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYL GRLDTENVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRISQEIDRFKATDTSILRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLSGRLDTENVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FRJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 9.284e-137
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FMZ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: V4VVL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018975mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FN33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 2.018e-134
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQV7_THECC (RAD3-like DNA-binding helicase protein isoform 1 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 7.529e-134
Identity = 200/229 (87.34%), Postives = 204/229 (89.08%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID----------------------RFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID                      RFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDSRKNLFHKLGPKPTYAVGLFHGRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 408

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_MOUSE (Regulator of telomere elongation helicase 1 OS=Mus musculus GN=Rtel1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 4.453e-11
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -1

Query:  304 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEY 609
            G ++  CPY+L+R+M Q A+++   Y YLLD K     S ++ K +VV+FDEAHN++ +C E+ S  +  + +      +N++ +E  R   T    L+ E+
Sbjct:  201 GSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLEEQAR--VTQQGELQQEF 299

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROVI (Regulator of telomere elongation helicase 1 homolog OS=Drosophila virilis GN=GJ16649 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.477e-10
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = -1

Query:  328 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATD 609
            G+    CPYF ++ +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV +R   +  A  ++  I +      A D
Sbjct:  202 GQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELSN-TIVILDEAHNIEKICEESASVQIRSSDVAMAIEDITHIMKIFTSGDAQD 294

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROER (Regulator of telomere elongation helicase 1 homolog OS=Drosophila erecta GN=GG18780 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.204e-10
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = -1

Query:  355 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQ 591
            CPYF +R +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV ++   +  A  ++  I Q
Sbjct:  209 CPYFASRELVPQADITFMPYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQ 286

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROYA (Regulator of telomere elongation helicase 1 homolog OS=Drosophila yakuba GN=GE16425 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.279e-10
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = -1

Query:  355 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQ 591
            CPYF +R +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV ++   +  A  ++  I Q
Sbjct:  209 CPYFASRELVPQADITFMPYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQ 286

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROME (Regulator of telomere elongation helicase 1 homolog OS=Drosophila melanogaster GN=CG4078 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.356e-10
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = -1

Query:  355 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQ 591
            CPYF +R +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV ++   +  A  ++  I Q
Sbjct:  209 CPYFASRELVPQADITFMPYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQ 286

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: FANCJ_CHICK (Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.590e-10
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = -1

Query:  310 FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRA 612
             GK+   CPYF AR ++  A++V   Y YLLDP++   +   + K  VV+ DEAHNI++   EA+S SV    L  A   L+ +    +  +  D  +LRA
Sbjct:  353 LGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHNIEDSAREAVSYSVTESQLNAAREELDFMVN--NNIRQKDHEQLRA 450

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROMO (Regulator of telomere elongation helicase 1 homolog OS=Drosophila mojavensis GN=GI15901 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.165e-9
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -1

Query:  361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609
            G+    CPY+ ++ +V  A++    Y YLLDPK       E+   ++V+ DEAHNI+ +C E+ SV +R   +  A  ++  I
Sbjct:  204 GQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIEL-SNTIVILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 285

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_BOVIN (Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.332e-9
Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = -1

Query:  301 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYN 609
            G +   CPY+L+R++ Q A+++   Y YLLD K       ++ K +VV+FDEAHN++ +C EA S  +    +      ++R+ +E  R K    + L  E++
Sbjct:  200 GTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRVLEE--RTKVAQQAELHPEFS 299

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_CULQU (Regulator of telomere elongation helicase 1 homolog OS=Culex quinquefasciatus GN=CPIJ003765 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.524e-9
Identity = 29/92 (31.52%), Postives = 55/92 (59.78%), Query Frame = -1

Query:  346 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID 621
            +RV  K K  CP+F+++ +++ A+V+   Y YLLDPK     + E+   ++++ DEAHN+D +C E+ S+ +R   +     ++  I + +D
Sbjct:  213 VRVSTKLKA-CPFFMSKELIENADVLFMPYNYLLDPKARKANNLEL-ANTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVTSIMKVMD 302

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DROGR (Regulator of telomere elongation helicase 1 homolog OS=Drosophila grimshawi GN=GH24089 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.684e-9
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = -1

Query:  361 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRI 609
            G+    CPYF ++ +V  A++    Y YLLDPK       E+   ++V+ DE HNI+ +C E+ SV +R   +  A  ++  I
Sbjct:  205 GQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELSN-AIVILDEGHNIEKICEESASVQIRSSDVAIAIEDVTHI 286

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SCT7_GOSRA	1.796e-143	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DXQ6_THECC	4.420e-140	96.62	RAD3-like DNA-binding helicase protein isoform 2 O...	[more]
A0A061DQ17_THECC	5.844e-140	96.62	RAD3-like DNA-binding helicase protein isoform 4 O...	[more]
A0A061DPQ8_THECC	3.903e-139	96.62	RAD3-like DNA-binding helicase protein isoform 3 O...	[more]
A0A0D2RVH9_GOSRA	1.688e-138	96.62	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067FRJ6_CITSI	9.284e-137	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FMZ8_CITSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4VVL3_9ROSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067FN33_CITSI	2.018e-134	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A061DQV7_THECC	7.529e-134	87.34	RAD3-like DNA-binding helicase protein isoform 1 O...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RTEL1_MOUSE	4.453e-11	33.33	Regulator of telomere elongation helicase 1 OS=Mus...	[more]
RTEL1_DROVI	3.477e-10	32.98	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_DROER	4.204e-10	36.71	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_DROYA	4.279e-10	36.71	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_DROME	4.356e-10	36.71	Regulator of telomere elongation helicase 1 homolo...	[more]
FANCJ_CHICK	6.590e-10	36.63	Fanconi anemia group J protein homolog OS=Gallus g...	[more]
RTEL1_DROMO	1.165e-9	33.73	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_BOVIN	1.332e-9	32.04	Regulator of telomere elongation helicase 1 OS=Bos...	[more]
RTEL1_CULQU	1.524e-9	31.52	Regulator of telomere elongation helicase 1 homolo...	[more]
RTEL1_DROGR	1.684e-9	33.73	Regulator of telomere elongation helicase 1 homolo...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	PANTHER	PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	coord: 1..207
None	No IPR available	PANTHER	PTHR11472:SF1	TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT	coord: 1..207
IPR001945	RAD3/XPD family	PRINTS	PR00852	XRODRMPGMNTD	coord: 154..175 score: 46.75 coord: 193..207 score: 37.27 coord: 94..113 score: 60.0 coord: 129..147 score: 70.68
IPR006554	Helicase-like, DEXD box c2 type	SMART	SM00488	deadxpd	coord: 1..101 e-value: 0.0047 score: -97.6
IPR010643	Helical and beta-bridge domain	PFAM	PF06777	HBB	coord: 91..207 e-value: 4.9E-22 score: 78.4
IPR010614	DEAD2	PFAM	PF06733	DEAD_2	coord: 4..77 e-value: 1.8E-27 score: 96.0
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 50..59
IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	PROSITE	PS51193	HELICASE_ATP_BIND_2	coord: 1..106 score: 17.915

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0015740 ID=g.arboreum_cottongen_reftransV1_0015740; Name=g.arboreum_cottongen_reftransV1_0015740; organism=Gossypium arboreum; type=contig; length=621bp
TAGAGTCAACATGAGTGAATGCAGACGATCATAACAGAACTTCAATGTTT
TCTGGTCAATTCCAGCATGACTATTGATAGATGCAACAAAGCTAACTGGG
CTTTCTTTCTCAACATTCTCCGTGTCTAGTCGGCCCCTTAGATACTGAAC
TAATCTACGTAGGACATGCAAAAAGTGCTCCGCTCGACGGATATTTCCAG
GCACAGCTTCCTTTAGAATATCATCAGGCAGTGCAGGATTTGAAAGCCAG
TTGTCAGTGATAGGTAGGTTTCCTCTCAATGCCAAACCCTCTACAAGTCG
GTTGTATTCAGCACGAAGTCGGCTTGCATCAGTGGCCTTGAACCTATCAA
TCTCTTGACTTATCCTATTAAGATTCCTTGTAGCTCCTTCAAGTGTCTGT
CTCCTAACACTAACACTAAGTGCTTCAATACACACATTGTCAATATTATG
GGCCTCATCAAACACCACAACAGACTCCTTCTGCATTTCCTTTGATATGA
TCCCAGCCACCTTTGGATCAAGTAAATACTGATAACTATAAACGACCACA
TTAGCAAACTGTACCATATGTCTCGCCAAAAAATACGGACACCACCCTTT
CTCCTTCCCAAACACCCTCAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001945	RAD3/XPD
IPR006554	Helicase-like_DEXD_c2
IPR010643	HBB
IPR010614	RAD3-like_helicase_DEAD
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004003	ATP-dependent DNA helicase activity
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008026	ATP-dependent helicase activity
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

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g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

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