g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001923
Unique Nameg.arboreum_cottongen_reftransV1_0001923
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length749
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0001923:23..749 .
Chr3:84857537..84860053 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V7BVG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G036700g PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.380e-105
Identity = 147/185 (79.46%), Postives = 168/185 (90.81%), Query Frame = -2
Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAAS V LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SW +F++YF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYL+FGSET GLPP+ L+DCK+E FGGGT++IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   78 KVLQVVLVSPQIPGNTGCIARTCAASNVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWGDFRDYFRQQEGEKRLLAFTKRGTQIHSEFSYRKGDYLLFGSETSGLPPEALVDCKTEPFGGGTVKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESHIDTTEESFIAEDIFA 262          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: R0HKY3_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10017771mg PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.429e-102
Identity = 142/188 (75.53%), Postives = 167/188 (88.83%), Query Frame = -2
Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 688
            D ++KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWPYV+VR H SW +FQ YF+QQEG+KR++AFTKRGT IHS+FSYR+GDYL+FGSET GLPP+ LLDCK++ +GGGT+R+PMVETYVRCLNLSVSVGIAVYEASRQLNYEQ++       + ++ LLTEDIFA
Sbjct:   99 DARKKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPYVVVRAHRSWDDFQEYFRQQEGEKRMIAFTKRGTKIHSEFSYRRGDYLLFGSETSGLPPEALLDCKNKPYGGGTLRVPMVETYVRCLNLSVSVGIAVYEASRQLNYEQIECAPEGCVNGDEPLLTEDIFA 286          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: K4AY83_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g086900.2 PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.190e-101
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = -2
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q KLLQVVLVSPQIPGN G IARTCAASAV LHLV PLGF +D+TKLKRAGLDYWPYV+V++H SW EF+ YF  Q G+KRLLAFTKRG A HSDFSY+KGD+L+FGSET GLPP+ LLDCKSE+ GGGT+RIPMVETYVRCLNLSVSVGIAVYEASRQ+NYEQLQ P     D E S +TEDIFA
Sbjct:   73 QNKLLQVVLVSPQIPGNTGSIARTCAASAVGLHLVEPLGFPIDNTKLKRAGLDYWPYVVVKVHRSWDEFREYFMGQAGEKRLLAFTKRGIATHSDFSYKKGDWLVFGSETKGLPPEALLDCKSESLGGGTLRIPMVETYVRCLNLSVSVGIAVYEASRQINYEQLQCPPDTCMDTETSFVTEDIFA 258          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: Q6NPL4_ARATH (At5g26880 OS=Arabidopsis thaliana GN=AGL26 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.293e-101
Identity = 145/216 (67.13%), Postives = 168/216 (77.78%), Query Frame = -2
Query:  125 THTKTKIETGNGNNSLPAP---------DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 745
            +H    +  G  +   P P         D + KLL VVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWP+V+V+ H SWAEFQ YF+ QEG+KR++AFTKRGT IHSDFSYR GDYL+FGSET GLPP+ L DC  E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ++       + E+ LLTEDIFA
Sbjct:   48 SHALRGVGIGESDKKNPLPRGAGEGVKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPQGCVNGEEPLLTEDIFA 263          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V4LML4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006150mg PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.782e-100
Identity = 140/191 (73.30%), Postives = 165/191 (86.39%), Query Frame = -2
Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVP---STNSGDFEQSLLTEDIFA 688
            D + KLLQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDD ++KRAGLDYWPYV+V+ H SWAEF+ YF+QQEG+KR++AFTKRGT IHS+ SYRKGDYL+FGSET GLPP+ L DCK+E++GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNY+Q++       N GD  + L  +DIFA
Sbjct:   90 DARSKLLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDARVKRAGLDYWPYVVVKAHSSWAEFREYFRQQEGEKRMIAFTKRGTKIHSEISYRKGDYLLFGSETSGLPPEALSDCKNESYGGGTVRIPMVETYVRCLNLSVSVGIALYEASRQLNYKQIECAPEGCVNGGD--EPLFADDIFA 278          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_YERPE (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yersinia pestis GN=trmL PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.258e-34
Identity = 70/160 (43.75%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGD-KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  ++ H  +  F +  K       RL A T +GT  HS  SY+  DYL+FG ET GLP  +L    ++      IRIPM +   R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURP0 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=trmL PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.673e-34
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = -2
Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  VVLV P+IP N G + R CA +   LHL+ PLGF +DD K++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FG+ET GL P ++     E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LISMF (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_0956 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.881e-33
Identity = 75/175 (42.86%), Postives = 98/175 (56.00%), Query Frame = -2
Query:  155 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY-EQLQVPSTNSGDFE 667
             +VL  P+IP N G I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + S  EF   F++ EG +     TK G  ++SD  Y    K  + +FG ET GL PD LL    E      +RIPM + ++R LNLS +  I  YEA RQ N+   LQ P+ +   F+
Sbjct:    4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNEGGE-FYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQKNEE----NCLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQ 168          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_STRPM (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=M28_Spy0301 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.567e-33
Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = -2
Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD--YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             +VL  PQIP N G IARTCAA+   LH++ P+GF +DD K+KRAGLDYW  + +  +    +F N   Q  G   L+  +K     +S  +Y  GD  Y +FG E  GLP D + +          +RIPM + +VR LN+S +V + +YEA RQ  ++ L++  T   D
Sbjct:   19 HIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDHLEQFIN---QCHGQLHLI--SKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMRE-----HAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEHD 179          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LISIN (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0934 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.922e-31
Identity = 72/175 (41.14%), Postives = 97/175 (55.43%), Query Frame = -2
Query:  155 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY-EQLQVPSTNSGDFE 667
             +VL  P+IP N G I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + S  EF   F++  G +     TK G  ++SD  Y    K  + +FG ET GL PD LL    E      +RIPM + ++R LNLS +  +  YEA RQ ++   LQ P+ +   F+
Sbjct:    4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNAGGE-FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGL-PDELLQANEE----NCLRIPMTD-HIRSLNLSNTAAVLAYEALRQQSFGALLQEPNYDRKIFK 168          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SHEPW (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=trmL PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.134e-31
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = -2
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  + L  P+I  N G I R  A +   LHL+ PLGF ++D KL+RAGLDY     V  H +   F+++ K  +G KR++A T +G+  HS+ ++++ D L+FG E+ GLP D++    +E      +RIPM+ T  R LNLS +V I  YEA RQL+Y
Sbjct:    1 MFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKN---FESFLKAMQG-KRIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQ----RLRIPMMST-SRSLNLSNAVAIISYEAWRQLDY 150          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_METGS (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Methylovorus glucosetrophus (strain SIP3-4) GN=trmL PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.643e-31
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = -2
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VL  P+IP N G I R CA +   LHLV PLGF ++D +LKRAGLDY  Y  +++H +W             +R+ A T +G+A HS  ++++GD  +FG ET GLP ++    + +      +R+PM+    R LNLS S  + +YEA RQ ++
Sbjct:    1 MFDIVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENWEACCAAL----AGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEI----RDQFTPEHRVRLPMMPNN-RSLNLSNSAAVLLYEAWRQHDF 150          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LACLM (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=llmg_1343 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.575e-31
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             + L  P+I  N G IARTCAA+   LHL+ P GF++ D  LKRAGLDYW  V +  H +  +F N         +L   +K    ++SD  Y   +K  Y +FG E  GLP + + + + E      IRIPM + +VR LNLS    + VYEA +Q  +  L++  T   D
Sbjct:    3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLQDFMNSIADG---GQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRDE-----CIRIPMNDEHVRSLNLSNCACMIVYEALKQQEFRGLELVHTYEKD 166          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ACISJ (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Acidovorax sp. (strain JS42) GN=trmL PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.578e-30
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = -2
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VLV P+IP N G + R  A +   LHLV PLGF ++D  ++RAGLDY  Y  VR H  W         Q    R+ A T  GT    D  +  GD+ +FG+E+ GLPP++      ETF     +R+PM+    R LNLS +V + VYEA RQ ++
Sbjct:    1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPGWTALLR--DMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPEL-----RETFPPAQRLRLPMLPNQ-RSLNLSNAVAVTVYEAWRQNSF 152          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_POLSJ (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trmL PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 8.287e-30
Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  173 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPST 673
            +  +VLV P+IP N G + R  A +   LHLV PLGF +DD  ++RAGLDY  Y  V  H SW    +   Q+    RL A T  G     D  +  GD+L+FG+ET GL PDV      E+F     +R+PM +   R LNLS +V + V+EA RQ  +     P+ 
Sbjct:    1 MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHASWQALLD--SQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDV-----RESFPMAQRLRVPM-QPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAA 160          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7BVG7_PHAVU2.380e-10579.46Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
R0HKY3_9BRAS1.429e-10275.53Uncharacterized protein (Fragment) OS=Capsella rub... [more]
K4AY83_SOLLC1.190e-10177.96Uncharacterized protein OS=Solanum lycopersicum GN... [more]
Q6NPL4_ARATH2.293e-10167.13At5g26880 OS=Arabidopsis thaliana GN=AGL26 PE=2 SV... [more]
V4LML4_EUTSA2.782e-10073.30Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRML_YERPE5.258e-3443.75tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yers... [more]
TRML_BURP07.673e-3440.63tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk... [more]
TRML_LISMF2.881e-3342.86Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_STRPM4.567e-3339.18Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_LISIN2.922e-3141.14Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_SHEPW3.134e-3140.88tRNA (cytidine(34)-2'-O)-methyltransferase OS=Shew... [more]
TRML_METGS4.643e-3138.36tRNA (cytidine(34)-2'-O)-methyltransferase OS=Meth... [more]
TRML_LACLM7.575e-3137.79Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_ACISJ4.578e-3040.00tRNA (cytidine(34)-2'-O)-methyltransferase OS=Acid... [more]
TRML_POLSJ8.287e-3039.88tRNA (cytidine(34)-2'-O)-methyltransferase OS=Pola... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 7..174
e-value: 6.5E-58
score: 194.5
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePIRSFPIRSF029256SpoU_TrmHcoord: 10..172
e-value: 4.2E-53
score: 176.8
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferaseHAMAPMF_01885tRNA_methyltr_TrmLcoord: 11..169
score: 31.033
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 11..160
e-value: 2.5E-29
score: 102.1
NoneNo IPR availablePANTHERPTHR12029RNA METHYLTRANSFERASEcoord: 7..187
NoneNo IPR availablePANTHERPTHR12029:SF31TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 7..187
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 11..177

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR016914TrmL
IPR001537SpoU_MeTrfase
IPR029028Alpha/beta_knot_MTases
Vocabulary: Biological Process
TermDefinition
GO:0001510RNA methylation
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding