g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001923
Unique Name	g.arboreum_cottongen_reftransV1_0001923
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	749

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0001923:23..749 . Chr3:84857537..84860053 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V7BVG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G036700g PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.380e-105
Identity = 147/185 (79.46%), Postives = 168/185 (90.81%), Query Frame = -2

Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAAS V LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SW +F++YF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYL+FGSET GLPP+ L+DCK+E FGGGT++IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   78 KVLQVVLVSPQIPGNTGCIARTCAASNVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWGDFRDYFRQQEGEKRLLAFTKRGTQIHSEFSYRKGDYLLFGSETSGLPPEALVDCKTEPFGGGTVKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESHIDTTEESFIAEDIFA 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: R0HKY3_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10017771mg PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.429e-102
Identity = 142/188 (75.53%), Postives = 167/188 (88.83%), Query Frame = -2

Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 688
            D ++KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWPYV+VR H SW +FQ YF+QQEG+KR++AFTKRGT IHS+FSYR+GDYL+FGSET GLPP+ LLDCK++ +GGGT+R+PMVETYVRCLNLSVSVGIAVYEASRQLNYEQ++       + ++ LLTEDIFA
Sbjct:   99 DARKKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPYVVVRAHRSWDDFQEYFRQQEGEKRMIAFTKRGTKIHSEFSYRRGDYLLFGSETSGLPPEALLDCKNKPYGGGTLRVPMVETYVRCLNLSVSVGIAVYEASRQLNYEQIECAPEGCVNGDEPLLTEDIFA 286

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: K4AY83_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g086900.2 PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.190e-101
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q KLLQVVLVSPQIPGN G IARTCAASAV LHLV PLGF +D+TKLKRAGLDYWPYV+V++H SW EF+ YF  Q G+KRLLAFTKRG A HSDFSY+KGD+L+FGSET GLPP+ LLDCKSE+ GGGT+RIPMVETYVRCLNLSVSVGIAVYEASRQ+NYEQLQ P     D E S +TEDIFA
Sbjct:   73 QNKLLQVVLVSPQIPGNTGSIARTCAASAVGLHLVEPLGFPIDNTKLKRAGLDYWPYVVVKVHRSWDEFREYFMGQAGEKRLLAFTKRGIATHSDFSYKKGDWLVFGSETKGLPPEALLDCKSESLGGGTLRIPMVETYVRCLNLSVSVGIAVYEASRQINYEQLQCPPDTCMDTETSFVTEDIFA 258

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: Q6NPL4_ARATH (At5g26880 OS=Arabidopsis thaliana GN=AGL26 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.293e-101
Identity = 145/216 (67.13%), Postives = 168/216 (77.78%), Query Frame = -2

Query:  125 THTKTKIETGNGNNSLPAP---------DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 745
            +H    +  G  +   P P         D + KLL VVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWP+V+V+ H SWAEFQ YF+ QEG+KR++AFTKRGT IHSDFSYR GDYL+FGSET GLPP+ L DC  E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ++       + E+ LLTEDIFA
Sbjct:   48 SHALRGVGIGESDKKNPLPRGAGEGVKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPQGCVNGEEPLLTEDIFA 263

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V4LML4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006150mg PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.782e-100
Identity = 140/191 (73.30%), Postives = 165/191 (86.39%), Query Frame = -2

Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVP---STNSGDFEQSLLTEDIFA 688
            D + KLLQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDD ++KRAGLDYWPYV+V+ H SWAEF+ YF+QQEG+KR++AFTKRGT IHS+ SYRKGDYL+FGSET GLPP+ L DCK+E++GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNY+Q++       N GD  + L  +DIFA
Sbjct:   90 DARSKLLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDARVKRAGLDYWPYVVVKAHSSWAEFREYFRQQEGEKRMIAFTKRGTKIHSEISYRKGDYLLFGSETSGLPPEALSDCKNESYGGGTVRIPMVETYVRCLNLSVSVGIALYEASRQLNYKQIECAPEGCVNGGD--EPLFADDIFA 278

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SYNY3 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.948e-41
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = -2

Query:  203 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQL 673
            ++++VLV+PQIP N G IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H S  EF  +++ Q G+  LL F+  GT    D++Y+  D+L+ GSET GL P ++ D  ++      + IPM  + VR LNL+ S  IA++EA RQL
Sbjct:    1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BACSU (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain 168) GN=cspR PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.804e-37
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = -2

Query:  185 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD---YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQ 670
            L VVL  P+IP N G IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H S  E    +K+     +    TK G   H+ F Y   D   + +FG ET GLP D++ +          +R+PM E +VR LNLS +  I VYEA RQ NY  L+
Sbjct:    6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOLI (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmL PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOL6 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=trmL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCM (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.832e-36
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  V+LV+P+IP N G + R CA +   LHL+ PLGF +DD K++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP DVL    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_PHOAA (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.783e-36
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEF-QNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  ++ H  +  F +N     E   RL A T +GT  HS  SY+ GDYL+FG ET GLP  VL +   +      IRIPM+    R +NLS SV + V+EA RQL Y
Sbjct:    1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMPPQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_HAEIN (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmL PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.043e-35
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+R+GLDY  +  ++ H ++  F     + E  KRL A T +G   HS   ++ GDYL+FG ET G+P  +L +   E      IRIPM     R +NLS SV + VYEA RQL Y+
Sbjct:    1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFL----ESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=trmL PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.862e-35
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  VVLV+P+IP N G + R CA +   LHL+ PLGF +DD +++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP ++L    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFVA--AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SACD2 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=trmL PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.817e-35
Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VL  P+IP N G I R CA +   LHL+ PLGF++DD +L+RAGLDY  +  V  H +W    + F +Q+  +RL A + +GT  H + S  +GDYL+FG ET GLP ++L   +  TF    +RIPM+    R +NLS +  + VYEA RQL +
Sbjct:    1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEIL---EYITF-DNVLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_GEOSE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus stearothermophilus PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.411e-34
Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = -2

Query:  188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670
            L VVL  P+IP N G IARTCAA+  ALHL+ PLGF  DD  L+RAGLDYW +V +  + S     ++F QQ  +      TK G   ++ + +    K  + IFG ET GLP ++L + +        +RIPM E  VR LNLS +  I VYEA RQ ++  L
Sbjct:    3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDSL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V7BVG7_PHAVU	2.380e-105	79.46	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
R0HKY3_9BRAS	1.429e-102	75.53	Uncharacterized protein (Fragment) OS=Capsella rub...	[more]
K4AY83_SOLLC	1.190e-101	77.96	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
Q6NPL4_ARATH	2.293e-101	67.13	At5g26880 OS=Arabidopsis thaliana GN=AGL26 PE=2 SV...	[more]
V4LML4_EUTSA	2.782e-100	73.30	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
TRML_SYNY3	1.948e-41	49.04	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_BACSU	1.804e-37	45.45	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_ECOLI	1.246e-36	45.28	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch...	[more]
TRML_ECOL6	1.246e-36	45.28	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch...	[more]
TRML_BURCM	1.832e-36	42.50	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk...	[more]
TRML_PHOAA	2.783e-36	45.63	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Phot...	[more]
TRML_HAEIN	1.043e-35	43.13	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haem...	[more]
TRML_BURCH	1.862e-35	41.25	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk...	[more]
TRML_SACD2	4.817e-35	42.77	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Sacc...	[more]
TRML_GEOSE	1.411e-34	43.29	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 7..174 e-value: 6.5E-58 score: 194.5
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	PIRSF	PIRSF029256	SpoU_TrmH	coord: 10..172 e-value: 4.2E-53 score: 176.8
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	HAMAP	MF_01885	tRNA_methyltr_TrmL	coord: 11..169 score: 31.033
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 11..160 e-value: 2.5E-29 score: 102.1
None	No IPR available	PANTHER	PTHR12029	RNA METHYLTRANSFERASE	coord: 7..187
None	No IPR available	PANTHER	PTHR12029:SF31	TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASE	coord: 7..187
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 11..177

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029026	tRNA_m1G_MTases_N
IPR016914	TrmL
IPR001537	SpoU_MeTrfase
IPR029028	Alpha/beta_knot_MTases

Vocabulary: **Biological Process**
Term	Definition
GO:0001510	RNA methylation
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity
GO:0008173	RNA methyltransferase activity
GO:0003723	RNA binding

Search form

g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Pages

Pages