g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001923
Unique Nameg.arboreum_cottongen_reftransV1_0001923
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length749
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0001923:23..749 .
Chr3:84857537..84860053 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B2R6I4_GLYSO (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Glycine soja GN=glysoja_008545 PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.030e-108
Identity = 153/185 (82.70%), Postives = 169/185 (91.35%), Query Frame = -2 
Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V+IH SW +F+NYF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYLIFGSET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   76 KILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFRNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESCIDTTEESFIAEDIFA 260
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: C6TCU8_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.876e-108
Identity = 153/185 (82.70%), Postives = 168/185 (90.81%), Query Frame = -2 
Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V+IH SW +F NYF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYLIFGSET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   76 KILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESCIDTTEESFIAEDIFA 260
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A059BJ42_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03394 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.558e-107
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2 
Query:  125 SLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 703
            SL  P P  K LQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEFQ+YF++Q+G+KRLLAFTKRGT IHSDFSYRKGD+L+FGSET GL  +VL DCKSET+GGGT+RIPMVETYVRCLNLSVSVGIA+YEA RQLNYEQL+  S+ + D+EQ+ +TEDIFA
Sbjct:   71 SLQGPSPN-KFLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHNSWAEFQDYFRKQDGEKRLLAFTKRGTDIHSDFSYRKGDWLVFGSETSGLSNEVLHDCKSETYGGGTLRIPMVETYVRCLNLSVSVGIALYEACRQLNYEQLRSSSSTANDYEQAFITEDIFA 262
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A059BJA6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03394 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 2.702e-107
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2 
Query:  125 SLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 703
            SL  P P  K LQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEFQ+YF++Q+G+KRLLAFTKRGT IHSDFSYRKGD+L+FGSET GL  +VL DCKSET+GGGT+RIPMVETYVRCLNLSVSVGIA+YEA RQLNYEQL+  S+ + D+EQ+ +TEDIFA
Sbjct:   79 SLQGPSPN-KFLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHNSWAEFQDYFRKQDGEKRLLAFTKRGTDIHSDFSYRKGDWLVFGSETSGLSNEVLHDCKSETYGGGTLRIPMVETYVRCLNLSVSVGIALYEACRQLNYEQLRSSSSTANDYEQAFITEDIFA 270
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V4TQS4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032303mg PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.507e-107
Identity = 150/186 (80.65%), Postives = 165/186 (88.71%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q K LQVVLVSPQIPGN GCIARTCAASA  LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H +WAEF++YF+QQEG+KRLLAFTKRGT+ HS+ SYRKGDYLIFGSET GLPP+ LLDC SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA+RQLNYEQL+  S    D E   +TEDIFA
Sbjct:  102 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 287
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067GXF8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024933mg PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.781e-106
Identity = 149/186 (80.11%), Postives = 165/186 (88.71%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q K LQVVLVSPQIPGN GCIARTCAASA  LHLVGPLGF+VDDTKLKRAGLDYWPYV++++H +WAEF++YF+QQEG+KRLLAFTKRGT+ HS+ SYRKGDYLIFGSET GLPP+ LLDC SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA+RQLNYEQL+  S    D E   +TEDIFA
Sbjct:   75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0A0K6L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428850 PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 6.691e-106
Identity = 148/184 (80.43%), Postives = 167/184 (90.76%), Query Frame = -2 
Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 676
            KLLQVVLVSP IPGN G IARTCAASAV LHLVGPLGFKVDDTKLKRAGLDYWPYV+V+IH +WA+FQ YFK+QEG+KRLLAFTKRGT  HSDFSY++GDYL+FGSET GLPP+ L DCK++ FGGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQV S +  + EQS++TED+FA
Sbjct:   85 KLLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIHNTWADFQEYFKKQEGEKRLLAFTKRGTTHHSDFSYKRGDYLLFGSETTGLPPEALEDCKNQPFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNYEQLQVSSESCTNNEQSIITEDVFA 268
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7LTS3_ARALL (tRNA/rRNA methyltransferase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324780 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 9.627e-106
Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = -2 
Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 688
            D + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWP+V+VR H SWAEFQ YF+QQEG+KR++AFTKRGT IHSDFSYR GDYL+FGSETCGLPP+ L DCK E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ++       + E+ LLTEDIFA
Sbjct:   73 DARSKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVRAHSSWAEFQEYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEALSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPEGCVNGEEPLLTEDIFA 260
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: G7IWJ3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g027870 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.351e-105
Identity = 150/187 (80.21%), Postives = 166/187 (88.77%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDF-EQSLLTEDIFA 682
              K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLG+KVDDTKLKRAGLDYWPYV+V+IH SW  F++YF QQEG+KRLLAFTKRGT IHSDFSYRKGDYL+FG+ET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQ+PS    D  E+S +TEDIF 
Sbjct:   92 HSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESFITEDIFG 278
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: I3S4V5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.536e-105
Identity = 144/186 (77.42%), Postives = 168/186 (90.32%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
              ++LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLG+KVDDTKLKRAGLDYWPYV+V+IH SW +F++YF+QQEG+KRLLAFTKRGT IHS+FSY+KGDYL+FG+ET GLPP+ LLDCK++ FGGGT++IPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ Q+PS      E++L+TEDI A
Sbjct:   74 HSRILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHNSWEDFRDYFRQQEGEKRLLAFTKRGTKIHSEFSYKKGDYLLFGAETTGLPPEALLDCKTKPFGGGTLKIPMVETYVRCLNLSVSVGIALYEASRQLNYEQFQIPSETCIPTEETLITEDILA 259
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SYNY3 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.948e-41
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = -2 
Query:  203 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQL 673
            ++++VLV+PQIP N G IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H S  EF  +++ Q G+  LL F+  GT    D++Y+  D+L+ GSET GL P ++ D  ++      + IPM  + VR LNL+ S  IA++EA RQL
Sbjct:    1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BACSU (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain 168) GN=cspR PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.804e-37
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = -2 
Query:  185 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD---YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQ 670
            L VVL  P+IP N G IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H S  E    +K+     +    TK G   H+ F Y   D   + +FG ET GLP D++ +          +R+PM E +VR LNLS +  I VYEA RQ NY  L+
Sbjct:    6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOLI (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmL PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOL6 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=trmL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCM (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.832e-36
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = -2 
Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  V+LV+P+IP N G + R CA +   LHL+ PLGF +DD K++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP DVL    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_PHOAA (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.783e-36
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEF-QNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  ++ H  +  F +N     E   RL A T +GT  HS  SY+ GDYL+FG ET GLP  VL +   +      IRIPM+    R +NLS SV + V+EA RQL Y
Sbjct:    1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMPPQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_HAEIN (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmL PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.043e-35
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = -2 
Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+R+GLDY  +  ++ H ++  F     + E  KRL A T +G   HS   ++ GDYL+FG ET G+P  +L +   E      IRIPM     R +NLS SV + VYEA RQL Y+
Sbjct:    1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFL----ESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=trmL PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.862e-35
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = -2 
Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  VVLV+P+IP N G + R CA +   LHL+ PLGF +DD +++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP ++L    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFVA--AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SACD2 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=trmL PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.817e-35
Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VL  P+IP N G I R CA +   LHL+ PLGF++DD +L+RAGLDY  +  V  H +W    + F +Q+  +RL A + +GT  H + S  +GDYL+FG ET GLP ++L   +  TF    +RIPM+    R +NLS +  + VYEA RQL +
Sbjct:    1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEIL---EYITF-DNVLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_GEOSE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus stearothermophilus PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.411e-34
Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = -2 
Query:  188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670
            L VVL  P+IP N G IARTCAA+  ALHL+ PLGF  DD  L+RAGLDYW +V +  + S     ++F QQ  +      TK G   ++ + +    K  + IFG ET GLP ++L + +        +RIPM E  VR LNLS +  I VYEA RQ ++  L
Sbjct:    3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDSL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2R6I4_GLYSO2.030e-10882.70Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
C6TCU8_SOYBN2.876e-10882.70Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A059BJ42_EUCGR1.558e-10778.24Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059BJA6_EUCGR2.702e-10778.24Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V4TQS4_9ROSI4.507e-10780.65Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067GXF8_CITSI1.781e-10680.11Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A0A0K6L9_CUCSA6.691e-10680.43Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
D7LTS3_ARALL9.627e-10677.66tRNA/rRNA methyltransferase family protein OS=Arab... [more]
G7IWJ3_MEDTR1.351e-10580.21Uncharacterized protein OS=Medicago truncatula GN=... [more]
I3S4V5_LOTJA1.536e-10577.42Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRML_SYNY31.948e-4149.04Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_BACSU1.804e-3745.45Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_ECOLI1.246e-3645.28tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch... [more]
TRML_ECOL61.246e-3645.28tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch... [more]
TRML_BURCM1.832e-3642.50tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk... [more]
TRML_PHOAA2.783e-3645.63tRNA (cytidine(34)-2'-O)-methyltransferase OS=Phot... [more]
TRML_HAEIN1.043e-3543.13tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haem... [more]
TRML_BURCH1.862e-3541.25tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk... [more]
TRML_SACD24.817e-3542.77tRNA (cytidine(34)-2'-O)-methyltransferase OS=Sacc... [more]
TRML_GEOSE1.411e-3443.29Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 7..174
e-value: 6.5E-58
score: 194.5
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePIRSFPIRSF029256SpoU_TrmHcoord: 10..172
e-value: 4.2E-53
score: 176.8
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferaseHAMAPMF_01885tRNA_methyltr_TrmLcoord: 11..169
score: 31.033
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 11..160
e-value: 2.5E-29
score: 102.1
NoneNo IPR availablePANTHERPTHR12029RNA METHYLTRANSFERASEcoord: 7..187
NoneNo IPR availablePANTHERPTHR12029:SF31TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 7..187
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 11..177

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR016914TrmL
IPR001537SpoU_MeTrfase
IPR029028Alpha/beta_knot_MTases
Vocabulary: Biological Process
TermDefinition
GO:0001510RNA methylation
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding