g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001923
Unique Name	g.arboreum_cottongen_reftransV1_0001923
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	749

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0001923:23..749 . Chr3:84857537..84860053 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B2R6I4_GLYSO (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Glycine soja GN=glysoja_008545 PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.030e-108
Identity = 153/185 (82.70%), Postives = 169/185 (91.35%), Query Frame = -2

Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V+IH SW +F+NYF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYLIFGSET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   76 KILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFRNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESCIDTTEESFIAEDIFA 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: C6TCU8_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.876e-108
Identity = 153/185 (82.70%), Postives = 168/185 (90.81%), Query Frame = -2

Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD-FEQSLLTEDIFA 676
            K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V+IH SW +F NYF+QQEG+KRLLAFTKRGT IHS+FSYRKGDYLIFGSET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQVPS +  D  E+S + EDIFA
Sbjct:   76 KILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESCIDTTEESFIAEDIFA 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A059BJ42_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03394 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.558e-107
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2

Query:  125 SLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 703
            SL  P P  K LQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEFQ+YF++Q+G+KRLLAFTKRGT IHSDFSYRKGD+L+FGSET GL  +VL DCKSET+GGGT+RIPMVETYVRCLNLSVSVGIA+YEA RQLNYEQL+  S+ + D+EQ+ +TEDIFA
Sbjct:   71 SLQGPSPN-KFLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHNSWAEFQDYFRKQDGEKRLLAFTKRGTDIHSDFSYRKGDWLVFGSETSGLSNEVLHDCKSETYGGGTLRIPMVETYVRCLNLSVSVGIALYEACRQLNYEQLRSSSSTANDYEQAFITEDIFA 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A059BJA6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03394 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 2.702e-107
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2

Query:  125 SLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 703
            SL  P P  K LQVVLVSPQIPGN GCIARTCAASA+ LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEFQ+YF++Q+G+KRLLAFTKRGT IHSDFSYRKGD+L+FGSET GL  +VL DCKSET+GGGT+RIPMVETYVRCLNLSVSVGIA+YEA RQLNYEQL+  S+ + D+EQ+ +TEDIFA
Sbjct:   79 SLQGPSPN-KFLQVVLVSPQIPGNTGCIARTCAASAIGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHNSWAEFQDYFRKQDGEKRLLAFTKRGTDIHSDFSYRKGDWLVFGSETSGLSNEVLHDCKSETYGGGTLRIPMVETYVRCLNLSVSVGIALYEACRQLNYEQLRSSSSTANDYEQAFITEDIFA 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: V4TQS4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032303mg PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.507e-107
Identity = 150/186 (80.65%), Postives = 165/186 (88.71%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q K LQVVLVSPQIPGN GCIARTCAASA  LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H +WAEF++YF+QQEG+KRLLAFTKRGT+ HS+ SYRKGDYLIFGSET GLPP+ LLDC SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA+RQLNYEQL+  S    D E   +TEDIFA
Sbjct:  102 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 287

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067GXF8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024933mg PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.781e-106
Identity = 149/186 (80.11%), Postives = 165/186 (88.71%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            Q K LQVVLVSPQIPGN GCIARTCAASA  LHLVGPLGF+VDDTKLKRAGLDYWPYV++++H +WAEF++YF+QQEG+KRLLAFTKRGT+ HS+ SYRKGDYLIFGSET GLPP+ LLDC SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA+RQLNYEQL+  S    D E   +TEDIFA
Sbjct:   75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0A0K6L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428850 PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 6.691e-106
Identity = 148/184 (80.43%), Postives = 167/184 (90.76%), Query Frame = -2

Query:  125 KLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 676
            KLLQVVLVSP IPGN G IARTCAASAV LHLVGPLGFKVDDTKLKRAGLDYWPYV+V+IH +WA+FQ YFK+QEG+KRLLAFTKRGT  HSDFSY++GDYL+FGSET GLPP+ L DCK++ FGGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQV S +  + EQS++TED+FA
Sbjct:   85 KLLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIHNTWADFQEYFKKQEGEKRLLAFTKRGTTHHSDFSYKRGDYLLFGSETTGLPPEALEDCKNQPFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNYEQLQVSSESCTNNEQSIITEDVFA 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7LTS3_ARALL (tRNA/rRNA methyltransferase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324780 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 9.627e-106
Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = -2

Query:  125 DPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 688
            D + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDD ++KRAGLDYWP+V+VR H SWAEFQ YF+QQEG+KR++AFTKRGT IHSDFSYR GDYL+FGSETCGLPP+ L DCK E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ++       + E+ LLTEDIFA
Sbjct:   73 DARSKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVRAHSSWAEFQEYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEALSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPEGCVNGEEPLLTEDIFA 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: G7IWJ3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g027870 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.351e-105
Identity = 150/187 (80.21%), Postives = 166/187 (88.77%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDF-EQSLLTEDIFA 682
              K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLG+KVDDTKLKRAGLDYWPYV+V+IH SW  F++YF QQEG+KRLLAFTKRGT IHSDFSYRKGDYL+FG+ET GLPP+ LLDCK+E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEASRQLNYE LQ+PS    D  E+S +TEDIF 
Sbjct:   92 HSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESFITEDIFG 278

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: I3S4V5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.536e-105
Identity = 144/186 (77.42%), Postives = 168/186 (90.32%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
              ++LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLG+KVDDTKLKRAGLDYWPYV+V+IH SW +F++YF+QQEG+KRLLAFTKRGT IHS+FSY+KGDYL+FG+ET GLPP+ LLDCK++ FGGGT++IPMVETYVRCLNLSVSVGIA+YEASRQLNYEQ Q+PS      E++L+TEDI A
Sbjct:   74 HSRILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHNSWEDFRDYFRQQEGEKRLLAFTKRGTKIHSEFSYKKGDYLLFGAETTGLPPEALLDCKTKPFGGGTLKIPMVETYVRCLNLSVSVGIALYEASRQLNYEQFQIPSETCIPTEETLITEDILA 259

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_AERHH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=trmL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.458e-29
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF+ DD ++KRAGLDY  +  V+    W  F+  F +     R+ A T +G   HS   +  GD L+FG E+ GLP +++     E      +RIPM+    R +NL+ +V + VYE+ RQL Y
Sbjct:    1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVK---RWPNFEA-FLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQ----RLRIPMLPQ-SRSMNLANAVAVFVYESWRQLGY 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LACGA (Putative RNA (cytidine(34)-2'-O)-methyltransferase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 11718 / AM63) GN=LGAS_1346 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.864e-28
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = -2

Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             VVL  P +P N G IARTCA +   L L+ PLGF++D+ K+KRAGLDYW  V +R+H     F    K    +  +   +K  +  ++   Y    K  Y +FG ET GLP   +       +    +RIPM +  +RC NLS SV + + EA RQ  +  ++       D
Sbjct:    4 HVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDLDAF---LKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFM-----REYYDRNLRIPMSDN-IRCYNLSNSVAMVLLEALRQQGFPNMETSHHYEND 166

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_MYCPN (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_521 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.984e-24
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = -2

Query:  188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTA----IHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670
            + +VL  P+IP N G I R+C A    LHL+ P GF ++D ++ RAGL+ W  V +  H SW  F    +    +K +   TK GT     I+     R+  Y +FG ET GLP  ++     E +    +RIP+    VR +NLS +V   +YE ++Q +Y  L
Sbjct:    6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSWEHF---IETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM-----EQYSQNQVRIPIWNP-VRSINLSNTVACVLYEYAKQNHYFNL 161

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_MYCGE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG346 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.273e-22
Identity = 55/168 (32.74%), Postives = 83/168 (49.40%), Query Frame = -2

Query:  188 QKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKG----DYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 679
            + ++ +VL  P+IP N G I R+C A    LHL+ P GF ++D ++ RAGL+ W  + +  H SW  F    +    +K +   TK G                 Y +FG ET GLP  ++     + F    IRIP+  + VR +NL+ +V   +YE S+Q  Y  L
Sbjct:    3 KSVINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSWEHF---LQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM-----DNFKQNQIRIPIWNS-VRSINLANAVVCILYEYSKQNQYSNL 161

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_STAND (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) GN=trmL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.178e-22
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = -2

Query:  206 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQ 670
            L + L  P I  NAG +AR  A   + LH+V P GF V D   +RAG+DY    ++R H S+  F+ + ++ EG +RL+  T RG   H DF++ + D ++ G E+ G+P  V     +       I IP+ E   R LN++++  + + EA RQ
Sbjct:    3 LALALYEPDIAQNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRRHASFKAFEEW-RRAEG-RRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADAR------IVIPLNEG-ARSLNVALAGAMILGEALRQ 148

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B2R6I4_GLYSO	2.030e-108	82.70	Putative tRNA (Cytidine(34)-2'-O)-methyltransferas...	[more]
C6TCU8_SOYBN	2.876e-108	82.70	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A059BJ42_EUCGR	1.558e-107	78.24	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059BJA6_EUCGR	2.702e-107	78.24	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
V4TQS4_9ROSI	4.507e-107	80.65	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067GXF8_CITSI	1.781e-106	80.11	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A0A0K6L9_CUCSA	6.691e-106	80.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
D7LTS3_ARALL	9.627e-106	77.66	tRNA/rRNA methyltransferase family protein OS=Arab...	[more]
G7IWJ3_MEDTR	1.351e-105	80.21	Uncharacterized protein OS=Medicago truncatula GN=...	[more]
I3S4V5_LOTJA	1.536e-105	77.42	Uncharacterized protein OS=Lotus japonicus PE=2 SV...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
TRML_AERHH	7.458e-29	39.62	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Aero...	[more]
TRML_LACGA	5.864e-28	35.47	Putative RNA (cytidine(34)-2'-O)-methyltransferase...	[more]
TRML_MYCPN	1.984e-24	35.15	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_MYCGE	1.273e-22	32.74	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_STAND	4.178e-22	34.84	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Star...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 7..174 e-value: 6.5E-58 score: 194.5
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	PIRSF	PIRSF029256	SpoU_TrmH	coord: 10..172 e-value: 4.2E-53 score: 176.8
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	HAMAP	MF_01885	tRNA_methyltr_TrmL	coord: 11..169 score: 31.033
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 11..160 e-value: 2.5E-29 score: 102.1
None	No IPR available	PANTHER	PTHR12029	RNA METHYLTRANSFERASE	coord: 7..187
None	No IPR available	PANTHER	PTHR12029:SF31	TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASE	coord: 7..187
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 11..177

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029026	tRNA_m1G_MTases_N
IPR016914	TrmL
IPR001537	SpoU_MeTrfase
IPR029028	Alpha/beta_knot_MTases

Vocabulary: **Biological Process**
Term	Definition
GO:0001510	RNA methylation
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity
GO:0008173	RNA methyltransferase activity
GO:0003723	RNA binding

Search form

g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

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