g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001923
Unique Nameg.arboreum_cottongen_reftransV1_0001923
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length749
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0001923:23..749 .
Chr3:84857537..84860053 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2QZE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 435.647 bits (1119), Expect = 8.173e-152
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = -2
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 257          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2S1C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.350e-146
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = -2
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 254          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B0NQK7_GOSAR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Gossypium arboreum GN=F383_16703 PE=3 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 2.303e-140
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = -2
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP     IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP-----IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 249          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DXE7_THECC (AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.162e-121
Identity = 176/207 (85.02%), Postives = 184/207 (88.89%), Query Frame = -2
Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            ETGNGN SLP       +   Q KLLQVVLVSPQIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   61 ETGNGN-SLPGGIGKAVSQLSQNKLLQVVLVSPQIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 266          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DWH2_THECC (AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 9.023e-112
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = -2
Query:  125 QIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 646
            QIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   21 QIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 194          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: M5XKD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010708mg PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.201e-111
Identity = 153/186 (82.26%), Postives = 171/186 (91.94%), Query Frame = -2
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGFKVDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQ+G+KRLLAFTKRGT+ HSDFSYR+GD+LIFGSET GLPP+VL DC SETFGGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQL+YEQLQ P+ N  D EQS ++EDIFA
Sbjct:   54 RNKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFKVDDAKLKRAGLDYWPYVVVKVHSSWAEFQDYFRQQDGEKRLLAFTKRGTSFHSDFSYRRGDFLIFGSETSGLPPEVLQDCNSETFGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLSYEQLQFPNENCIDHEQSFVSEDIFA 239          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067L4Q0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 3.086e-111
Identity = 160/207 (77.29%), Postives = 179/207 (86.47%), Query Frame = -2
Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            E GNGN SLP       +   + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEF++YF+QQEGDKRLLAFTKRG A HS+FSYRKGDYL+FGSET GLPP+ LLDC++E+ GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS    D E+S +TEDIFA
Sbjct:   57 ERGNGN-SLPHGIGEAVSEVSRNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWAEFRDYFRQQEGDKRLLAFTKRGKATHSEFSYRKGDYLLFGSETRGLPPEALLDCENESIGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSETCIDNEKSFITEDIFA 262          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9HNL8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06890g PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.116e-109
Identity = 162/212 (76.42%), Postives = 178/212 (83.96%), Query Frame = -2
Query:  125 ETGNGN-NSLP--------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPS---TNSGDFEQSLLTEDIFA 724
            ++G GN NSLP             +KLLQVVLVSPQIPGN GCIARTCAA++V LHLVGPLGF+VDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQEGDKRLLAFTKRGT  HS+FSYRKGDYL+FGSET GLPP+ LLDCKSE FGGG IRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    N G  EQS +TEDIFA
Sbjct:   55 QSGRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSEDFVNGG--EQSFITEDIFA 264          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9RHG3_RICCO (23S rRNA methyltransferase, putative OS=Ricinus communis GN=RCOM_1525400 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 5.756e-109
Identity = 152/186 (81.72%), Postives = 167/186 (89.78%), Query Frame = -2
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VD TKLKRAGLDYWPYV+V++H SW EFQ+YF+QQEGDKRLLAFTKRGTA HS+F YRKGDYLIFGSET GLPP+ L DCK+E FGGGTIRIPM+ETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS +  D EQS + EDIFA
Sbjct:   49 RNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHESWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSESWTDNEQSFIIEDIFA 234          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7T2X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01270 PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 6.984e-109
Identity = 155/197 (78.68%), Postives = 168/197 (85.28%), Query Frame = -2
Query:  125 NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 715
            NG     A     +LLQVVLVSPQIPGN G IARTCAASAV LHL+ PLGF+VDD KLKRAGLDYWPYV+V++H SWAEF+ YF+QQEG+KRLLAFTKRGT IHSDFSYRKGD+LIFGSETCGLPP+ LLDCKSE  GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    D  +S LTEDIFA
Sbjct:   54 NGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDIFA 250          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_AERHH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=trmL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.458e-29
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = -2
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF+ DD ++KRAGLDY  +  V+    W  F+  F +     R+ A T +G   HS   +  GD L+FG E+ GLP +++     E      +RIPM+    R +NL+ +V + VYE+ RQL Y
Sbjct:    1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVK---RWPNFEA-FLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQ----RLRIPMLPQ-SRSMNLANAVAVFVYESWRQLGY 150          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LACGA (Putative RNA (cytidine(34)-2'-O)-methyltransferase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 11718 / AM63) GN=LGAS_1346 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.864e-28
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = -2
Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             VVL  P +P N G IARTCA +   L L+ PLGF++D+ K+KRAGLDYW  V +R+H     F    K    +  +   +K  +  ++   Y    K  Y +FG ET GLP   +       +    +RIPM +  +RC NLS SV + + EA RQ  +  ++       D
Sbjct:    4 HVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDLDAF---LKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFM-----REYYDRNLRIPMSDN-IRCYNLSNSVAMVLLEALRQQGFPNMETSHHYEND 166          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_MYCPN (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_521 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.984e-24
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = -2
Query:  188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTA----IHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670
            + +VL  P+IP N G I R+C A    LHL+ P GF ++D ++ RAGL+ W  V +  H SW  F    +    +K +   TK GT     I+     R+  Y +FG ET GLP  ++     E +    +RIP+    VR +NLS +V   +YE ++Q +Y  L
Sbjct:    6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSWEHF---IETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM-----EQYSQNQVRIPIWNP-VRSINLSNTVACVLYEYAKQNHYFNL 161          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_MYCGE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG346 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.273e-22
Identity = 55/168 (32.74%), Postives = 83/168 (49.40%), Query Frame = -2
Query:  188 QKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKG----DYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 679
            + ++ +VL  P+IP N G I R+C A    LHL+ P GF ++D ++ RAGL+ W  + +  H SW  F    +    +K +   TK G                 Y +FG ET GLP  ++     + F    IRIP+  + VR +NL+ +V   +YE S+Q  Y  L
Sbjct:    3 KSVINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSWEHF---LQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM-----DNFKQNQIRIPIWNS-VRSINLANAVVCILYEYSKQNQYSNL 161          
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_STAND (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) GN=trmL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.178e-22
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  206 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQ 670
            L + L  P I  NAG +AR  A   + LH+V P GF V D   +RAG+DY    ++R H S+  F+ + ++ EG +RL+  T RG   H DF++ + D ++ G E+ G+P  V     +       I IP+ E   R LN++++  + + EA RQ
Sbjct:    3 LALALYEPDIAQNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRRHASFKAFEEW-RRAEG-RRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADAR------IVIPLNEG-ARSLNVALAGAMILGEALRQ 148          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QZE7_GOSRA8.173e-15299.04Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S1C5_GOSRA2.350e-14697.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NQK7_GOSAR2.303e-14095.67Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
A0A061DXE7_THECC1.162e-12185.02AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TC... [more]
A0A061DWH2_THECC9.023e-11289.66AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TC... [more]
M5XKD6_PRUPE1.201e-11182.26Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067L4Q0_JATCU3.086e-11177.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HNL8_POPTR2.116e-10976.42Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9RHG3_RICCO5.756e-10981.7223S rRNA methyltransferase, putative OS=Ricinus co... [more]
D7T2X8_VITVI6.984e-10978.68Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRML_AERHH7.458e-2939.62tRNA (cytidine(34)-2'-O)-methyltransferase OS=Aero... [more]
TRML_LACGA5.864e-2835.47Putative RNA (cytidine(34)-2'-O)-methyltransferase... [more]
TRML_MYCPN1.984e-2435.15Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_MYCGE1.273e-2232.74Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_STAND4.178e-2234.84tRNA (cytidine(34)-2'-O)-methyltransferase OS=Star... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 7..174
e-value: 6.5E-58
score: 194.5
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePIRSFPIRSF029256SpoU_TrmHcoord: 10..172
e-value: 4.2E-53
score: 176.8
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferaseHAMAPMF_01885tRNA_methyltr_TrmLcoord: 11..169
score: 31.033
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 11..160
e-value: 2.5E-29
score: 102.1
NoneNo IPR availablePANTHERPTHR12029RNA METHYLTRANSFERASEcoord: 7..187
NoneNo IPR availablePANTHERPTHR12029:SF31TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 7..187
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 11..177

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR016914TrmL
IPR001537SpoU_MeTrfase
IPR029028Alpha/beta_knot_MTases
Vocabulary: Biological Process
TermDefinition
GO:0001510RNA methylation
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding