g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001923
Unique Nameg.arboreum_cottongen_reftransV1_0001923
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length749
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0001923:23..749 .
Chr3:84857537..84860053 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2QZE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 435.647 bits (1119), Expect = 8.173e-152
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = -2 
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 257
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2S1C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.350e-146
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = -2 
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 254
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B0NQK7_GOSAR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Gossypium arboreum GN=F383_16703 PE=3 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 2.303e-140
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = -2 
Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP     IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP-----IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 249
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DXE7_THECC (AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.162e-121
Identity = 176/207 (85.02%), Postives = 184/207 (88.89%), Query Frame = -2 
Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            ETGNGN SLP       +   Q KLLQVVLVSPQIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   61 ETGNGN-SLPGGIGKAVSQLSQNKLLQVVLVSPQIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 266
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DWH2_THECC (AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 9.023e-112
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = -2 
Query:  125 QIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 646
            QIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   21 QIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 194
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: M5XKD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010708mg PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.201e-111
Identity = 153/186 (82.26%), Postives = 171/186 (91.94%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGFKVDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQ+G+KRLLAFTKRGT+ HSDFSYR+GD+LIFGSET GLPP+VL DC SETFGGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQL+YEQLQ P+ N  D EQS ++EDIFA
Sbjct:   54 RNKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFKVDDAKLKRAGLDYWPYVVVKVHSSWAEFQDYFRQQDGEKRLLAFTKRGTSFHSDFSYRRGDFLIFGSETSGLPPEVLQDCNSETFGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLSYEQLQFPNENCIDHEQSFVSEDIFA 239
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067L4Q0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 3.086e-111
Identity = 160/207 (77.29%), Postives = 179/207 (86.47%), Query Frame = -2 
Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            E GNGN SLP       +   + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEF++YF+QQEGDKRLLAFTKRG A HS+FSYRKGDYL+FGSET GLPP+ LLDC++E+ GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS    D E+S +TEDIFA
Sbjct:   57 ERGNGN-SLPHGIGEAVSEVSRNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWAEFRDYFRQQEGDKRLLAFTKRGKATHSEFSYRKGDYLLFGSETRGLPPEALLDCENESIGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSETCIDNEKSFITEDIFA 262
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9HNL8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06890g PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.116e-109
Identity = 162/212 (76.42%), Postives = 178/212 (83.96%), Query Frame = -2 
Query:  125 ETGNGN-NSLP--------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPS---TNSGDFEQSLLTEDIFA 724
            ++G GN NSLP             +KLLQVVLVSPQIPGN GCIARTCAA++V LHLVGPLGF+VDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQEGDKRLLAFTKRGT  HS+FSYRKGDYL+FGSET GLPP+ LLDCKSE FGGG IRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    N G  EQS +TEDIFA
Sbjct:   55 QSGRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSEDFVNGG--EQSFITEDIFA 264
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9RHG3_RICCO (23S rRNA methyltransferase, putative OS=Ricinus communis GN=RCOM_1525400 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 5.756e-109
Identity = 152/186 (81.72%), Postives = 167/186 (89.78%), Query Frame = -2 
Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VD TKLKRAGLDYWPYV+V++H SW EFQ+YF+QQEGDKRLLAFTKRGTA HS+F YRKGDYLIFGSET GLPP+ L DCK+E FGGGTIRIPM+ETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS +  D EQS + EDIFA
Sbjct:   49 RNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHESWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSESWTDNEQSFIIEDIFA 234
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7T2X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01270 PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 6.984e-109
Identity = 155/197 (78.68%), Postives = 168/197 (85.28%), Query Frame = -2 
Query:  125 NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 715
            NG     A     +LLQVVLVSPQIPGN G IARTCAASAV LHL+ PLGF+VDD KLKRAGLDYWPYV+V++H SWAEF+ YF+QQEG+KRLLAFTKRGT IHSDFSYRKGD+LIFGSETCGLPP+ LLDCKSE  GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    D  +S LTEDIFA
Sbjct:   54 NGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDIFA 250
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_YERPE (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yersinia pestis GN=trmL PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.258e-34
Identity = 70/160 (43.75%), Postives = 92/160 (57.50%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGD-KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  ++ H  +  F +  K       RL A T +GT  HS  SY+  DYL+FG ET GLP  +L    ++      IRIPM +   R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURP0 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=trmL PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.673e-34
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = -2 
Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  VVLV P+IP N G + R CA +   LHL+ PLGF +DD K++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FG+ET GL P ++     E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LISMF (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_0956 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.881e-33
Identity = 75/175 (42.86%), Postives = 98/175 (56.00%), Query Frame = -2 
Query:  155 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY-EQLQVPSTNSGDFE 667
             +VL  P+IP N G I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + S  EF   F++ EG +     TK G  ++SD  Y    K  + +FG ET GL PD LL    E      +RIPM + ++R LNLS +  I  YEA RQ N+   LQ P+ +   F+
Sbjct:    4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNEGGE-FYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQKNEE----NCLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQ 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_STRPM (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=M28_Spy0301 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.567e-33
Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = -2 
Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD--YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             +VL  PQIP N G IARTCAA+   LH++ P+GF +DD K+KRAGLDYW  + +  +    +F N   Q  G   L+  +K     +S  +Y  GD  Y +FG E  GLP D + +          +RIPM + +VR LN+S +V + +YEA RQ  ++ L++  T   D
Sbjct:   19 HIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDHLEQFIN---QCHGQLHLI--SKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMRE-----HAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEHD 179
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LISIN (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0934 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.922e-31
Identity = 72/175 (41.14%), Postives = 97/175 (55.43%), Query Frame = -2 
Query:  155 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY-EQLQVPSTNSGDFE 667
             +VL  P+IP N G I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + S  EF   F++  G +     TK G  ++SD  Y    K  + +FG ET GL PD LL    E      +RIPM + ++R LNLS +  +  YEA RQ ++   LQ P+ +   F+
Sbjct:    4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNAGGE-FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGL-PDELLQANEE----NCLRIPMTD-HIRSLNLSNTAAVLAYEALRQQSFGALLQEPNYDRKIFK 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SHEPW (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=trmL PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.134e-31
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  + L  P+I  N G I R  A +   LHL+ PLGF ++D KL+RAGLDY     V  H +   F+++ K  +G KR++A T +G+  HS+ ++++ D L+FG E+ GLP D++    +E      +RIPM+ T  R LNLS +V I  YEA RQL+Y
Sbjct:    1 MFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKN---FESFLKAMQG-KRIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQ----RLRIPMMST-SRSLNLSNAVAIISYEAWRQLDY 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_METGS (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Methylovorus glucosetrophus (strain SIP3-4) GN=trmL PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.643e-31
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VL  P+IP N G I R CA +   LHLV PLGF ++D +LKRAGLDY  Y  +++H +W             +R+ A T +G+A HS  ++++GD  +FG ET GLP ++    + +      +R+PM+    R LNLS S  + +YEA RQ ++
Sbjct:    1 MFDIVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENWEACCAAL----AGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEI----RDQFTPEHRVRLPMMPNN-RSLNLSNSAAVLLYEAWRQHDF 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_LACLM (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=llmg_1343 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.575e-31
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = -2 
Query:  161 QVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGD 667
             + L  P+I  N G IARTCAA+   LHL+ P GF++ D  LKRAGLDYW  V +  H +  +F N         +L   +K    ++SD  Y   +K  Y +FG E  GLP + + + + E      IRIPM + +VR LNLS    + VYEA +Q  +  L++  T   D
Sbjct:    3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLQDFMNSIADG---GQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRDE-----CIRIPMNDEHVRSLNLSNCACMIVYEALKQQEFRGLELVHTYEKD 166
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ACISJ (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Acidovorax sp. (strain JS42) GN=trmL PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.578e-30
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = -2 
Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VLV P+IP N G + R  A +   LHLV PLGF ++D  ++RAGLDY  Y  VR H  W         Q    R+ A T  GT    D  +  GD+ +FG+E+ GLPP++      ETF     +R+PM+    R LNLS +V + VYEA RQ ++
Sbjct:    1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPGWTALLR--DMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPEL-----RETFPPAQRLRLPMLPNQ-RSLNLSNAVAVTVYEAWRQNSF 152
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_POLSJ (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trmL PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 8.287e-30
Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = -2 
Query:  173 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPST 673
            +  +VLV P+IP N G + R  A +   LHLV PLGF +DD  ++RAGLDY  Y  V  H SW    +   Q+    RL A T  G     D  +  GD+L+FG+ET GL PDV      E+F     +R+PM +   R LNLS +V + V+EA RQ  +     P+ 
Sbjct:    1 MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHASWQALLD--SQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDV-----RESFPMAQRLRVPM-QPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAA 160
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QZE7_GOSRA8.173e-15299.04Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S1C5_GOSRA2.350e-14697.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NQK7_GOSAR2.303e-14095.67Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
A0A061DXE7_THECC1.162e-12185.02AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TC... [more]
A0A061DWH2_THECC9.023e-11289.66AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TC... [more]
M5XKD6_PRUPE1.201e-11182.26Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067L4Q0_JATCU3.086e-11177.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HNL8_POPTR2.116e-10976.42Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9RHG3_RICCO5.756e-10981.7223S rRNA methyltransferase, putative OS=Ricinus co... [more]
D7T2X8_VITVI6.984e-10978.68Putative uncharacterized protein OS=Vitis vinifera... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRML_YERPE5.258e-3443.75tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yers... [more]
TRML_BURP07.673e-3440.63tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk... [more]
TRML_LISMF2.881e-3342.86Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_STRPM4.567e-3339.18Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_LISIN2.922e-3141.14Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_SHEPW3.134e-3140.88tRNA (cytidine(34)-2'-O)-methyltransferase OS=Shew... [more]
TRML_METGS4.643e-3138.36tRNA (cytidine(34)-2'-O)-methyltransferase OS=Meth... [more]
TRML_LACLM7.575e-3137.79Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
TRML_ACISJ4.578e-3040.00tRNA (cytidine(34)-2'-O)-methyltransferase OS=Acid... [more]
TRML_POLSJ8.287e-3039.88tRNA (cytidine(34)-2'-O)-methyltransferase OS=Pola... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 7..174
e-value: 6.5E-58
score: 194.5
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePIRSFPIRSF029256SpoU_TrmHcoord: 10..172
e-value: 4.2E-53
score: 176.8
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferaseHAMAPMF_01885tRNA_methyltr_TrmLcoord: 11..169
score: 31.033
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 11..160
e-value: 2.5E-29
score: 102.1
NoneNo IPR availablePANTHERPTHR12029RNA METHYLTRANSFERASEcoord: 7..187
NoneNo IPR availablePANTHERPTHR12029:SF31TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 7..187
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 11..177

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR016914TrmL
IPR001537SpoU_MeTrfase
IPR029028Alpha/beta_knot_MTases
Vocabulary: Biological Process
TermDefinition
GO:0001510RNA methylation
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding