g.arboreum_cottongen_reftransV1_0020198, g.arboreum_cottongen_reftransV1_0020198 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A5AG05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006322 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.276e-30 Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 L S I LITS + + + S + PW +SR RAEF RS + P T W+ +P +S W+ P RG IS Q+YYS+FHKT +RKKF+K++W+DFTRESTR A+ D+ ++PEFTDW++EHADRI++LP D Sbjct: 137 LVSCWXIWILITSPKWRRRVYKKYSENRSPWGWKSREATAKHNRAEFLSRSGKTIPRGTPWD--SPKSSSAWSDSPVRGVISRHKTRGIRNQQDYYSTFHKTPSRKKFSKKDWEDFTRESTRQAMGDMVSSPEFTDWIVEHADRIQVLPDD 285
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: V4U3K7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019878mg PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.597e-30 Identity = 83/182 (45.60%), Postives = 112/182 (61.54%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLT---WNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L S +CSLITS + W W+ S GRAEF RSP + LW+ TP ++ + W+ P RG +S ++YYS+FH+T RK+FT+QEW+DFTR+STR A+A+LAA+PEF DW+IEHADRIKLLP +SSEE++GS+S+S+D + S S FR F Sbjct: 322 LISCCIVCSLITSPK----------W-VASWLQHSSQTTNKHGRAEFLSRSPVVGSRGKLWS--TPKSTKSPPLWSNSPVRGVVSPYSGERVINQRDYYSTFHETGKRKRFTEQEWEDFTRDSTRQAVAELAASPEFADWIIEHADRIKLLPSESSEEALGSESDSTDENVAASCSGFRFFG 490
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A067KXF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02673 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.539e-30 Identity = 77/180 (42.78%), Postives = 104/180 (57.78%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSS-RFRLFN 516 L SS IC L+ + ++ ++Q S W+ R R RAEF RS ++ P + P +S W+ P +G IS QNY+S+FHKT RKKFTK+EW+DFTREST+ A+A+ AA+PE T+W+IE+ADRI+LLP D S E + S + GSS RF LFN Sbjct: 331 LLSSYTICFLLNAMSQHNPVHQSYSRGGNLWLQRGRQATAVHNRAEFLSRSAKISPGGNKLS--PPKSSSAWSNSPIKGLISPHTGSVTRGQQNYFSTFHKTPKRKKFTKKEWEDFTRESTQQAVAEWAASPEVTNWLIENADRIQLLPSDCSSEETVRSESDSTNETVGSSGKRFSLFN 508
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: D7TQ33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00620 PE=4 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 4.756e-30 Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 L S I LITS + + + S + PW +SR RAEF RS + P T W+ +P +S W+ P RG IS Q+YYS+FHKT +RKKF+K++W+DFTRESTR A+ D+ ++PEFTDW++EHADRI++LP D Sbjct: 322 LVSCWVIWILITSPKWRRRVYKKYSENRSPWGWKSREATAKHNRAEFLSRSGKTIPRGTPWD--SPKSSSAWSDSPVRGVISRHKTRGIRNQQDYYSTFHKTPSRKKFSKKDWEDFTRESTRQAMGDMVSSPEFTDWIVEHADRIQVLPDD 470
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: M5VUF7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa007388m2g PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.988e-29 Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTH-----MNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS-------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 L S IC LI + N H M+Q +W PW+ + R GR EF RS P + W +P T W+ P +G +S Q YYS+FHK ++RKKFTK+EW DFT++STR AIA+ A++PE TDW+IEHADRI+LLP + Sbjct: 66 LVSCWIICKLIRESM-NIHENMVIMHQLGAWSGSPWLQQGRQVKGRHGRPEFLSRSS---PQKKNWK--SPSTLSAWSDSPVKGVMSPSFRARDQQEYYSTFHKMQSRKKFTKKEWDDFTQQSTRQAIAEWASSPEVTDWIIEHADRIQLLPSE 213
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3S4G6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.026e-28 Identity = 83/195 (42.56%), Postives = 110/195 (56.41%), Query Frame = 1 Query: 4 VLASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L SS A+C L+ S + T N S + W+ +R GRAEF +S P+ P LWN +P S +W+ P RG +S + +YYS+FHKTRNRKKFTK EW +FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P + S + + SD E GS + FRLFN Sbjct: 22 ALVSSVAVCELVYSIQWLHEWYETSGNDDYSLE---WMKGTR------GRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDEFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 201
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3S7T2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 4.243e-28 Identity = 83/195 (42.56%), Postives = 109/195 (55.90%), Query Frame = 1 Query: 4 VLASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L SS A+C L+ S + T N S + W+ +R GRAEF +S P+ P LWN +P S +W+ P RG +S + +YYS+FHKTRNRKKFTK EW FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P + S + + SD E GS + FRLFN Sbjct: 22 ALVSSVAVCELVYSIQWLHEWYETSGNDDYSLE---WMKGTR------GRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDGFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 201
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3ST17_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.077e-28 Identity = 71/148 (47.97%), Postives = 93/148 (62.84%), Query Frame = 1 Query: 130 QGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 +GRAEF +S P+ P LWN +P S +W+ P RG +S + +YYS+FHKTRNRKKFTK EW +FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P + S + + SD E GS + FRLFN Sbjct: 5 RGRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDEFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 146
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B2RS82_GLYSO (Transmembrane protein 194A OS=Glycine soja GN=glysoja_011210 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.531e-27 Identity = 80/189 (42.33%), Postives = 106/189 (56.08%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PR----MYPNRTLWNGHTPLTSLTWNKFPARGGI--------------SDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L S A C LI++ + + + D R R +GRAEF +S P+ P LWN +P S W+ P RG + + QNYYS+FHKTRNRKKFTKQEW +FTREST+ A+A+ AA+PEFTDW++EHADRI++LP + S + + SD + GS FRLFN Sbjct: 325 LISCGAACKLISAIKWLCGWYETSNDDYSLQWMRGR-----RGRAEFLSKSTPKGKHWSSPKGKLWN--SPRRS-AWSDSPVRGVVSPSSGISSQSSGTQAGQNYYSTFHKTRNRKKFTKQEWDEFTRESTKQALAEWAASPEFTDWIVEHADRIQVLPSE---SSDETMGSESDSTDRGSGRGFRLFN 502
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: V7CUZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G115500g PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.444e-27 Identity = 88/194 (45.36%), Postives = 116/194 (59.79%), Query Frame = 1 Query: 7 LASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PR----MYPNRTLWNGHTPLTSLTWNKFPARG------GISDQ--------NYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L S +C L ++T+ T N S WV +R RAEF +S P+ P R +WN +P S W P RG GIS Q +YYS+FHKT+NRKKFTKQEW +FTREST+ A+A+ AA+PEFTDW++EHADRIK+LP +SS+E++GS+S+S+D GS S FR+FN Sbjct: 327 LISCGIVCKLFSATKWLHGWYETSGNDDYSLQ---WVKGTRS------RAEFLSKSTPKGKHWSSPKRKVWN--SPKRS-AWTDSPVRGVVTPSRGISSQSSGTDMGRDYYSTFHKTQNRKKFTKQEWDEFTRESTKQALAEWAASPEFTDWIVEHADRIKVLPSESSDETMGSESDSADV---GSGSGFRIFN 505 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020198 ID=g.arboreum_cottongen_reftransV1_0020198; Name=g.arboreum_cottongen_reftransV1_0020198; organism=Gossypium arboreum; type=contig; length=724bpback to top |