g.arboreum_cottongen_reftransV1_0020198, g.arboreum_cottongen_reftransV1_0020198 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020198
Unique Nameg.arboreum_cottongen_reftransV1_0020198
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length724
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0020198:1..724 .
Chr4:30048118..30049299 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A5AG05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006322 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.276e-30
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            L S   I  LITS +    + +  S +  PW  +SR       RAEF  RS +  P  T W+  +P +S  W+  P RG IS          Q+YYS+FHKT +RKKF+K++W+DFTRESTR A+ D+ ++PEFTDW++EHADRI++LP D
Sbjct:  137 LVSCWXIWILITSPKWRRRVYKKYSENRSPWGWKSREATAKHNRAEFLSRSGKTIPRGTPWD--SPKSSSAWSDSPVRGVISRHKTRGIRNQQDYYSTFHKTPSRKKFSKKDWEDFTRESTRQAMGDMVSSPEFTDWIVEHADRIQVLPDD 285          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: V4U3K7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019878mg PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.597e-30
Identity = 83/182 (45.60%), Postives = 112/182 (61.54%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLT---WNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            L S   +CSLITS +          W    W+  S       GRAEF  RSP +     LW+  TP ++ +   W+  P RG +S          ++YYS+FH+T  RK+FT+QEW+DFTR+STR A+A+LAA+PEF DW+IEHADRIKLLP +SSEE++GS+S+S+D +   S S FR F 
Sbjct:  322 LISCCIVCSLITSPK----------W-VASWLQHSSQTTNKHGRAEFLSRSPVVGSRGKLWS--TPKSTKSPPLWSNSPVRGVVSPYSGERVINQRDYYSTFHETGKRKRFTEQEWEDFTRDSTRQAVAELAASPEFADWIIEHADRIKLLPSESSEEALGSESDSTDENVAASCSGFRFFG 490          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A067KXF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02673 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.539e-30
Identity = 77/180 (42.78%), Postives = 104/180 (57.78%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSS-RFRLFN 516
            L SS  IC L+ +  ++  ++Q  S     W+ R R       RAEF  RS ++ P     +   P +S  W+  P +G IS          QNY+S+FHKT  RKKFTK+EW+DFTREST+ A+A+ AA+PE T+W+IE+ADRI+LLP D S E      + S  +  GSS  RF LFN
Sbjct:  331 LLSSYTICFLLNAMSQHNPVHQSYSRGGNLWLQRGRQATAVHNRAEFLSRSAKISPGGNKLS--PPKSSSAWSNSPIKGLISPHTGSVTRGQQNYFSTFHKTPKRKKFTKKEWEDFTRESTQQAVAEWAASPEVTNWLIENADRIQLLPSDCSSEETVRSESDSTNETVGSSGKRFSLFN 508          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: D7TQ33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00620 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.756e-30
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            L S   I  LITS +    + +  S +  PW  +SR       RAEF  RS +  P  T W+  +P +S  W+  P RG IS          Q+YYS+FHKT +RKKF+K++W+DFTRESTR A+ D+ ++PEFTDW++EHADRI++LP D
Sbjct:  322 LVSCWVIWILITSPKWRRRVYKKYSENRSPWGWKSREATAKHNRAEFLSRSGKTIPRGTPWD--SPKSSSAWSDSPVRGVISRHKTRGIRNQQDYYSTFHKTPSRKKFSKKDWEDFTRESTRQAMGDMVSSPEFTDWIVEHADRIQVLPDD 470          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: M5VUF7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa007388m2g PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.988e-29
Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTH-----MNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGIS-------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            L S   IC LI  +  N H     M+Q  +W   PW+ + R      GR EF  RS    P +  W   +P T   W+  P +G +S        Q YYS+FHK ++RKKFTK+EW DFT++STR AIA+ A++PE TDW+IEHADRI+LLP +
Sbjct:   66 LVSCWIICKLIRESM-NIHENMVIMHQLGAWSGSPWLQQGRQVKGRHGRPEFLSRSS---PQKKNWK--SPSTLSAWSDSPVKGVMSPSFRARDQQEYYSTFHKMQSRKKFTKKEWDDFTQQSTRQAIAEWASSPEVTDWIIEHADRIQLLPSE 213          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3S4G6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.026e-28
Identity = 83/195 (42.56%), Postives = 110/195 (56.41%), Query Frame = 1
Query:    4 VLASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
             L SS A+C L+ S +       T  N   S +   W+  +R      GRAEF  +S P+      P   LWN  +P  S +W+  P RG +S              + +YYS+FHKTRNRKKFTK EW +FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P +    S  +  + SD  E GS + FRLFN
Sbjct:   22 ALVSSVAVCELVYSIQWLHEWYETSGNDDYSLE---WMKGTR------GRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDEFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 201          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3S7T2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.243e-28
Identity = 83/195 (42.56%), Postives = 109/195 (55.90%), Query Frame = 1
Query:    4 VLASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
             L SS A+C L+ S +       T  N   S +   W+  +R      GRAEF  +S P+      P   LWN  +P  S +W+  P RG +S              + +YYS+FHKTRNRKKFTK EW  FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P +    S  +  + SD  E GS + FRLFN
Sbjct:   22 ALVSSVAVCELVYSIQWLHEWYETSGNDDYSLE---WMKGTR------GRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDGFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 201          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: I3ST17_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.077e-28
Identity = 71/148 (47.97%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  130 QGRAEFFDRS-PRMY----PNRTLWNGHTPLTSLTWNKFPARGGIS--------------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            +GRAEF  +S P+      P   LWN  +P  S +W+  P RG +S              + +YYS+FHKTRNRKKFTK EW +FTREST+ A+A+ AA+PEFT+W+IEHADRIKL+P +    S  +  + SD  E GS + FRLFN
Sbjct:    5 RGRAEFLGKSTPKRKMSRSPQGKLWN--SPKRS-SWSDSPVRGVVSPSSGISPLSCVAQVEPDYYSTFHKTRNRKKFTKNEWDEFTRESTKQALAEWAASPEFTEWVIEHADRIKLVPSE---NSDEAIGSESDSTEVGSGNGFRLFN 146          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B2RS82_GLYSO (Transmembrane protein 194A OS=Glycine soja GN=glysoja_011210 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.531e-27
Identity = 80/189 (42.33%), Postives = 106/189 (56.08%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PR----MYPNRTLWNGHTPLTSLTWNKFPARGGI--------------SDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            L S  A C LI++ +      +  + D      R R     +GRAEF  +S P+      P   LWN  +P  S  W+  P RG +              + QNYYS+FHKTRNRKKFTKQEW +FTREST+ A+A+ AA+PEFTDW++EHADRI++LP +    S  +  + SD  + GS   FRLFN
Sbjct:  325 LISCGAACKLISAIKWLCGWYETSNDDYSLQWMRGR-----RGRAEFLSKSTPKGKHWSSPKGKLWN--SPRRS-AWSDSPVRGVVSPSSGISSQSSGTQAGQNYYSTFHKTRNRKKFTKQEWDEFTRESTKQALAEWAASPEFTDWIVEHADRIQVLPSE---SSDETMGSESDSTDRGSGRGFRLFN 502          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: V7CUZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G115500g PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.444e-27
Identity = 88/194 (45.36%), Postives = 116/194 (59.79%), Query Frame = 1
Query:    7 LASSSAICSLITSTR-----RNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRS-PR----MYPNRTLWNGHTPLTSLTWNKFPARG------GISDQ--------NYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            L S   +C L ++T+       T  N   S     WV  +R       RAEF  +S P+      P R +WN  +P  S  W   P RG      GIS Q        +YYS+FHKT+NRKKFTKQEW +FTREST+ A+A+ AA+PEFTDW++EHADRIK+LP +SS+E++GS+S+S+D    GS S FR+FN
Sbjct:  327 LISCGIVCKLFSATKWLHGWYETSGNDDYSLQ---WVKGTRS------RAEFLSKSTPKGKHWSSPKRKVWN--SPKRS-AWTDSPVRGVVTPSRGISSQSSGTDMGRDYYSTFHKTQNRKKFTKQEWDEFTRESTKQALAEWAASPEFTDWIVEHADRIKVLPSESSDETMGSESDSADV---GSGSGFRIFN 505          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A5AG05_VITVI1.276e-3045.03Putative uncharacterized protein OS=Vitis vinifera... [more]
V4U3K7_9ROSI1.597e-3045.60Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067KXF2_JATCU2.539e-3042.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
D7TQ33_VITVI4.756e-3045.03Putative uncharacterized protein OS=Vitis vinifera... [more]
M5VUF7_PRUPE6.988e-2944.16Uncharacterized protein (Fragment) OS=Prunus persi... [more]
I3S4G6_LOTJA2.026e-2842.56Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I3S7T2_LOTJA4.243e-2842.56Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I3ST17_LOTJA7.077e-2847.97Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A0B2RS82_GLYSO1.531e-2742.33Transmembrane protein 194A OS=Glycine soja GN=glys... [more]
V7CUZ1_PHAVU2.444e-2745.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31587FAMILY NOT NAMEDcoord: 1..170
NoneNo IPR availablePANTHERPTHR31587:SF3F1K23.6coord: 1..170

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020198 ID=g.arboreum_cottongen_reftransV1_0020198; Name=g.arboreum_cottongen_reftransV1_0020198; organism=Gossypium arboreum; type=contig; length=724bp
GTGGTATTGGCTTCTTCTTCTGCTATCTGTTCTCTCATCACATCAACTAG
AAGGAATACTCACATGAACCAACCACGGTCTTGGGACGAGGGTCCTTGGG
TGCACCGGTCAAGGCCGGGAATAATAAACCAAGGCCGTGCTGAATTTTTT
GATAGGTCTCCAAGAATGTATCCTAATAGGACATTGTGGAATGGACATAC
TCCACTGACTTCACTAACATGGAATAAATTTCCTGCAAGAGGCGGCATAA
GTGATCAAAATTACTATTCTAGCTTTCACAAGACACGTAACCGAAAGAAA
TTTACGAAACAAGAATGGAAAGATTTCACTCGCGAGTCTACCCGGCACGC
CATTGCAGATTTGGCGGCAACCCCAGAGTTCACTGATTGGATGATTGAAC
ATGCTGACAGGATTAAACTCCTTCCGTGTGATAGTTCAGAAGAATCAGTT
GGAAGCAAATCAAATTCGTCCGATTATGATGAAGAAGGAAGCTCCAGCCG
ATTTAGATTATTTAACTTGTAGCCTCCTATACGAAAATGGTTATCTTTGA
AAATTTAGCCCCAGATATAGGAATCATGTTACTCAAATTCAAGTGTGAAT
GTTGGATACAGATATTTGTTGTCGGAGAGTCAGGTCCTGATAATTAAGTC
CAGATATGCGTTGAACACAGATAATTGAAGAGTCGGAGTAATTCCAGATA
ACATGTTTATTTTACAAGTAAATT
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