g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009114
Unique Nameg.arboreum_cottongen_reftransV1_0009114
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0009114:1..446 .
Chr4:36687104..36687549 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D3DF12_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.778e-10
Identity = 75/148 (50.68%), Postives = 99/148 (66.89%), Query Frame = -3
Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTL  NAINP    LYL LNAL+PL+ S  A++PILRQPP + L  D   RDS +F +LN+ A   G+YLLL  S SS  + A +L GGA+ILL+LPLC+PG+V  R+W  RT+HT +F LEG +       D  +LHK ++ ++
Sbjct:   47 AALYTLAYNAINPTSPELYLLLNALIPLVISFTAIIPILRQPPFEPLPPDGVRRDSLMFLILNIFAALNGVYLLLFESNSSALASARLLFGGAIILLILPLCIPGLVIARNWYLRTIHT-SFRLEG-SGFILVDPDELELHKGMLAHE 192          
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: I1KJC4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.175e-9
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAIN +D+T+YL LNA+VP+L S L L+PIL QP  Q  S DT  RD+ +F  LN+LA+ TG
Sbjct:  149 AALYTLIANAINTNDDTVYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILALVTG 218          
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B2RQA9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033459 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.197e-9
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAIN +D+T+YL LNA+VP+L S L L+PIL QP  Q  S DT  RD+ +F  LN+LA+ TG
Sbjct:  149 AALYTLIANAINTNDDTVYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILALVTG 218          
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B2QNF0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046063 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.443e-9
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAIN +D TLYL LNA+VP+L S L L+PIL QP  Q  S DT  RD+ +F  LN+LA  TG
Sbjct:  149 AALYTLIANAINSNDATLYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILAFVTG 218          
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: M4E8I0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025086 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.771e-9
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = -3
Query:   67 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEG 444
            AALYTL  NAINP    LYL LNAL+PL+ S  AL+PILRQPPL+ L  D   RDSF+F +LN+LAV  G+YLLL  S +S  + A +L GG+++LL+LPLCLPG+V  R+W    VH+ +F LEG
Sbjct:  149 AALYTLAYNAINPISTQLYLLLNALIPLIVSFAALIPILRQPPLEPLPPDGVRRDSFMFLLLNILAVLNGVYLLLFGSKTSGVTSARLLFGGSILLLILPLCLPGLVYARNWYLHKVHS-SFRLEG 273          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3DF12_BRAOL6.778e-1050.68Uncharacterized protein OS=Brassica oleracea var. ... [more]
I1KJC4_SOYBN1.175e-961.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RQA9_GLYSO1.197e-961.43Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A0B2QNF0_GLYSO1.443e-962.86Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
M4E8I0_BRARP1.771e-957.14Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010658Nodulin-likePFAMPF06813Nodulin-likecoord: 2..99
e-value: 6.6E-13
score: 48.6
NoneNo IPR availablePANTHERPTHR21576:SF7MAJOR FACILITATOR PROTEIN-RELATEDcoord: 1..136
NoneNo IPR availablePANTHERPTHR21576UNCHARACTERIZED NODULIN-LIKE PROTEINcoord: 1..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..102
NoneNo IPR availableTMHMMTMhelixcoord: 81..103
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009114 ID=g.arboreum_cottongen_reftransV1_0009114; Name=g.arboreum_cottongen_reftransV1_0009114; organism=Gossypium arboreum; type=contig; length=446bp
GTCATTTCCAATCAATTCCTTATGGAGCTGATCAAAGTCATCAGGATCAA
ACGAGCTGAAGGTGGGGCCTTCAAGACAAAAGGCGGGGGTATGGACAGTA
CGACGAGCCCAGCTCCTGCCACATACAATGCCTGGTAAACACAAAGGTAG
GAGCAAAAGGATTAAGGCACCCCCTAGGAGAATGAGTGCCCTCGATGCCT
TAGATGAAAGTGAATTCAAAAGGAGAAGATATAGGCCGGTGAAAACAGCT
AAAACATTAAGGACAAAGAAAATAAAGGAATCCCGACTAGTAGTGTCCGT
GGACAGAAGTTGCAAAGGTGGTTGACGGAGGATGGGGACGAGAGCTAAGC
TGGAAGCAAGAAGAGGTACAAGTGCGTTTAAGAAGAGATAGAGGGTTTCA
TCATCGGGGTTTATTGCATTGGCAATCAGAGTGTAAAGTGCAGCAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010658Nodulin-like