g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D3DF12_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 6.778e-10 Identity = 75/148 (50.68%), Postives = 99/148 (66.89%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTL NAINP LYL LNAL+PL+ S A++PILRQPP + L D RDS +F +LN+ A G+YLLL S SS + A +L GGA+ILL+LPLC+PG+V R+W RT+HT +F LEG + D +LHK ++ ++ Sbjct: 47 AALYTLAYNAINPTSPELYLLLNALIPLVISFTAIIPILRQPPFEPLPPDGVRRDSLMFLILNIFAALNGVYLLLFESNSSALASARLLFGGAIILLILPLCIPGLVIARNWYLRTIHT-SFRLEG-SGFILVDPDELELHKGMLAHE 192
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: I1KJC4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.175e-9 Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -3 Query: 235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444 AALYTLIANAIN +D+T+YL LNA+VP+L S L L+PIL QP Q S DT RD+ +F LN+LA+ TG Sbjct: 149 AALYTLIANAINTNDDTVYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILALVTG 218
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B2RQA9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033459 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.197e-9 Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -3 Query: 235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444 AALYTLIANAIN +D+T+YL LNA+VP+L S L L+PIL QP Q S DT RD+ +F LN+LA+ TG Sbjct: 149 AALYTLIANAINTNDDTVYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILALVTG 218
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B2QNF0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046063 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.443e-9 Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = -3 Query: 235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444 AALYTLIANAIN +D TLYL LNA+VP+L S L L+PIL QP Q S DT RD+ +F LN+LA TG Sbjct: 149 AALYTLIANAINSNDATLYLLLNAIVPVLISGLVLIPILNQPQPQPHSVDTIQRDTSVFLCLNILAFVTG 218
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: M4E8I0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025086 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.771e-9 Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = -3 Query: 67 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEG 444 AALYTL NAINP LYL LNAL+PL+ S AL+PILRQPPL+ L D RDSF+F +LN+LAV G+YLLL S +S + A +L GG+++LL+LPLCLPG+V R+W VH+ +F LEG Sbjct: 149 AALYTLAYNAINPISTQLYLLLNALIPLIVSFAALIPILRQPPLEPLPPDGVRRDSFMFLLLNILAVLNGVYLLLFGSKTSGVTSARLLFGGSILLLILPLCLPGLVYARNWYLHKVHS-SFRLEG 273 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009114 ID=g.arboreum_cottongen_reftransV1_0009114; Name=g.arboreum_cottongen_reftransV1_0009114; organism=Gossypium arboreum; type=contig; length=446bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|