g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009114
Unique Nameg.arboreum_cottongen_reftransV1_0009114
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0009114:1..446 .
Chr4:36687104..36687549 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: V4TBD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033623mg PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.915e-13
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = -3 
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYT IA AI+P+D+T+YLFLNA+VPL+ S LAL+PIL QPP Q LS D    DSFIF VLN+LAV TG
Sbjct:  149 AALYTFIAKAIDPEDDTVYLFLNAVVPLITSCLALIPILHQPPQQQLSADDIRHDSFIFLVLNILAVLTG 218
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: B9SDB3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1515790 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.433e-11
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = -3 
Query:  238 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFT 444
            AA+Y LIAN+INP+++TLYL LNA VPL  S LAL+PILRQPPLQ LS D    D+ IF  LN+LA+FT
Sbjct:  149 AAIYNLIANSINPENDTLYLLLNAAVPLFVSILALLPILRQPPLQQLSADAARSDASIFLFLNILAIFT 217
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A059CJU1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02581 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.608e-11
Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = -3 
Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIA+AI+P    LYL LNA VPL+ S ++L+PILRQP L  L  D   RDS IF +LNVLAV TG+YLLL +S SS A+ A +LLGGAL LL+ PL +PGIV  R W R+ +H+ +F +EG +      DD  +LHKELI  +
Sbjct:  149 AALYTLIADAISPSSSALYLLLNAAVPLITSFVSLIPILRQPSLDPLPPDAVGRDSVIFLILNVLAVITGVYLLLTSSSSSDATSARLLLGGALFLLIFPLFIPGIVYARGWFRQAIHS-SFRIEGSS-FILVDDDGLELHKELINRE 294
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: D7UB72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00910 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.859e-11
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = -3 
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAINP +++LYL LNALVPL  S+LALVPIL QPP Q  S+DT   DS IF +LN +AVFTG
Sbjct:  149 AALYTLIANAINPHNDSLYLSLNALVPLSISTLALVPILLQPPPQNPSSDTVRSDSLIFLLLNGIAVFTG 218
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A067L5H7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02740 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.862e-11
Identity = 75/145 (51.72%), Postives = 100/145 (68.97%), Query Frame = -3 
Query:   10 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELI 444
            AALYTL +NAINP    +YL LNA+VPL+ S +AL+PILRQP L  LS +   RDS IF +LN LA+ TG+YLLL +S +S A++A +   GA+  L+ PLC+PG+V  R W  RT+H+ +F LEG +      DD  +LHKEL+
Sbjct:  149 AALYTLASNAINPSSSDIYLLLNAIVPLITSIVALLPILRQPSLDALSPEEVRRDSLIFLILNFLAILTGVYLLLFSSNTSNATKASLYFFGAIFFLIFPLCIPGVVYARDWFHRTIHS-SFRLEG-SGFILVDDDDLELHKELL 291
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: V4SZ44_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100005962mg PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.577e-10
Identity = 74/145 (51.03%), Postives = 98/145 (67.59%), Query Frame = -3 
Query:   10 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELI 444
            AA+Y L  NAINP    LYL LNAL+PL+ S  AL+PILRQP L  L  +   RDSFIF +LN++A+ TG+YLLL  + SS  + + +L GGAL LL+ PLC+PGIV  R W +RT+H+ +F L+G +       D  +LHKEL+
Sbjct:   46 AAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHS-SFRLDG-SGFLLIDVDDLELHKELL 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: R0GHM9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004470mg PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-10
Identity = 76/148 (51.35%), Postives = 99/148 (66.89%), Query Frame = -3 
Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTL  NAINP    LYL LNAL+PL+ S  A++PILRQPP + L  D   RDS +F VLN+LA   G+YLLL  S SS  + A +L GGA++LL+ PLC+PG+V  RSW  RT+HT +F LEG +       D  +LHK ++ ++
Sbjct:  149 AALYTLAYNAINPASPELYLLLNALIPLIVSFTAIIPILRQPPFEPLPPDGVRRDSLMFLVLNILAALNGVYLLLFGSNSSDLTSARLLFGGAIVLLIFPLCIPGLVIARSWYDRTIHT-SFRLEG-SGFILVDPDELELHKGMLAHE 294
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A067E651_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046386mg PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.212e-10
Identity = 74/145 (51.03%), Postives = 98/145 (67.59%), Query Frame = -3 
Query:   10 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELI 444
            AA+Y L  NAINP    LYL LNAL+PL+ S  AL+PILRQP L  L  +   RDSFIF +LN++A+ TG+YLLL  + SS  + + +L GGAL LL+ PLC+PGIV  R W +RT+H+ +F L+G +       D  +LHKEL+
Sbjct:  180 AAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHS-SFRLDG-SGFLLIDVDDLELHKELL 322
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A5AIM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020728 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.617e-10
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = -3 
Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAINP +++LYL LNALVPL  S+LALVPIL QPP Q  S+DT   DS IF +LN +AVFTG
Sbjct:  149 AALYTLIANAINPHNDSLYLSLNALVPLSISTLALVPILLQPPPQNPSSDTVRSDSLIFLLLNGIAVFTG 218
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: M4D7T3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra012543 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.519e-10
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = -3 
Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTL  NAINP    LYL LNAL+PL+ S  A++PILRQPP + L  D   RDS +F +LN+LA   G+YLLL  S SS  + A +L GGA++LL+LPLC+PG+V  R+W  RT+HT +F LEG +       D  +LHK ++ ++
Sbjct:  149 AALYTLAYNAINPTSPELYLLLNALIPLVISFTAIIPILRQPPFEPLPPDGVRRDSLMFLILNILAALNGVYLLLFESNSSALTSARLLFGGAILLLILPLCIPGLVIARNWYLRTIHT-SFRLEG-SGFILVDPDELELHKGMLAHE 294
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4TBD8_9ROSI9.915e-1368.57Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9SDB3_RICCO1.433e-1165.22Putative uncharacterized protein OS=Ricinus commun... [more]
A0A059CJU1_EUCGR1.608e-1155.41Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
D7UB72_VITVI4.859e-1170.00Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067L5H7_JATCU6.862e-1151.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
V4SZ44_9ROSI1.577e-1051.03Uncharacterized protein (Fragment) OS=Citrus cleme... [more]
R0GHM9_9BRAS1.975e-1051.35Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A067E651_CITSI2.212e-1051.03Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A5AIM4_VITVI2.617e-1070.00Putative uncharacterized protein OS=Vitis vinifera... [more]
M4D7T3_BRARP3.519e-1050.68Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010658Nodulin-likePFAMPF06813Nodulin-likecoord: 2..99
e-value: 6.6E-13
score: 48.6
NoneNo IPR availablePANTHERPTHR21576:SF7MAJOR FACILITATOR PROTEIN-RELATEDcoord: 1..136
NoneNo IPR availablePANTHERPTHR21576UNCHARACTERIZED NODULIN-LIKE PROTEINcoord: 1..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..102
NoneNo IPR availableTMHMMTMhelixcoord: 81..103
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009114 ID=g.arboreum_cottongen_reftransV1_0009114; Name=g.arboreum_cottongen_reftransV1_0009114; organism=Gossypium arboreum; type=contig; length=446bp
GTCATTTCCAATCAATTCCTTATGGAGCTGATCAAAGTCATCAGGATCAA
ACGAGCTGAAGGTGGGGCCTTCAAGACAAAAGGCGGGGGTATGGACAGTA
CGACGAGCCCAGCTCCTGCCACATACAATGCCTGGTAAACACAAAGGTAG
GAGCAAAAGGATTAAGGCACCCCCTAGGAGAATGAGTGCCCTCGATGCCT
TAGATGAAAGTGAATTCAAAAGGAGAAGATATAGGCCGGTGAAAACAGCT
AAAACATTAAGGACAAAGAAAATAAAGGAATCCCGACTAGTAGTGTCCGT
GGACAGAAGTTGCAAAGGTGGTTGACGGAGGATGGGGACGAGAGCTAAGC
TGGAAGCAAGAAGAGGTACAAGTGCGTTTAAGAAGAGATAGAGGGTTTCA
TCATCGGGGTTTATTGCATTGGCAATCAGAGTGTAAAGTGCAGCAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010658Nodulin-like