g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 3.419e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3094
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CQW4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1) HSP 1 Score: 450.284 bits (1157), Expect = 2.459e-138 Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VL+V SL++LGKPEF G+ + EW++E EI L ++IH D+ +GVVHIVGS ++LLRQNQ + G GG T+ +RWN +T LP QTNLEL S+ED N L++LLS IE+ K Sbjct: 2166 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 2515
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CT20_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1) HSP 1 Score: 450.669 bits (1158), Expect = 3.239e-138 Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VL+V SL++LGKPEF G+ + EW++E EI L ++IH D+ +GVVHIVGS ++LLRQNQ + G GG T+ +RWN +T LP QTNLEL S+ED N L++LLS IE+ K Sbjct: 2694 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 3043
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A068V7W9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_139 OS=Coffea canephora GN=GSCOC_T00019457001 PE=4 SV=1) HSP 1 Score: 446.047 bits (1146), Expect = 1.060e-136 Identity = 225/361 (62.33%), Postives = 289/361 (80.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADD-GKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYK+FGSAG+IGNP+GFARS+ +GI+DF++VP +++ +SP GL+TGMAQGTTSLLSNT+YA+SDAA+QFS+AAHKGIVAF D Q V +M R+ KG +++SKG+INE EGLTGLLQSPV+ AEKHGLPG++SGIALGVTGLV +PAASILEVTGKTAQSIRNRS++ +GSQR RVRLPR LS L+PYSWEEA+G +VL+ A++ KL D++ +M KAL+ GK+VI+T+R +LVV+C SLVDLGKP+F+GV A+ EWV+E +I + SVIH D+ VHIVGSS D R + +K G RWNN +PLPLFQTNLE +ED ++ L++LLSTIE+GK++G G Y+L Sbjct: 2344 MYKLFGSAGLIGNPLGFARSVSLGIKDFVSVPVQNVFQSPVGLLTGMAQGTTSLLSNTLYAISDAASQFSRAAHKGIVAFALDNQNVGQMGREKKGISTNSKGVINEFLEGLTGLLQSPVQGAEKHGLPGVVSGIALGVTGLVAKPAASILEVTGKTAQSIRNRSKIPHVGSQRFRVRLPRALSEGCALKPYSWEEAIGTAVLRNAENVVKLGDQILIMCKALRQGGKFVIVTDRSILVVSCSSLVDLGKPDFQGVPASPEWVVEADIGMDSVIHATIDEYAVHIVGSSMDTFSRASPHQQQKHSQGSRVKRWNNYQSPLPLFQTNLEFACKEDAQDLLQMLLSTIEKGKDRGWGRTYILH 2704
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: R0GSB5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1) HSP 1 Score: 427.557 bits (1098), Expect = 4.725e-130 Identity = 232/353 (65.72%), Postives = 276/353 (78.19%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057 +YKVFGSAGVIGNPMGFAR++ GI+DFL+ P +SI KSP G+I GMA GTTSLLS+TVYALSDAATQFSKAAHKGIVAFTF++ VARME+Q GE SHSKG+I EVFEGLTGLLQSP++ AEKHGLPG++SG+A+G+TGLV RP ASILEVTGKTAQSIRNRSR++ + SQR R+RLPRPLSRE PLRPYSWEEAVG +VL E D K K E V KALK G +V++T RLVLV++ PSL+D KP F GV + W+IE EI L SVIHTD GVV I+GS+SD + + Q + +K + RWNNPS PL QTN+EL SEE+ ++ L VLLSTIE GK + Sbjct: 3108 IYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPGRSISKSPAGIIQGMAHGTTSLLSSTVYALSDAATQFSKAAHKGIVAFTFNDNDVARMEKQQLGEGSHSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGMAMGITGLVARPTASILEVTGKTAQSIRNRSRIHNIRSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEVGDSLKFKGEKLVKCKALKQEGAFVVITGRLVLVLSSPSLIDFRKPGFLGVPIDLVWIIEREIGLESVIHTDCSGGVVRIIGSNSDGVSKWRQDLQKK--SSPPRKRWNNPSAQ-PLLQTNIELPSEEEAEDLLTVLLSTIETGKSRS 3457
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25 Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712 Y + GS +GNP+G R+ G G+ DF PA+ ++KSP G+A+GT+S + N+V+ + ++ + G+ +FDE+ + ER+L +G A G+ + +G+TG++ PV+ A+K G G G+A GV G+ +P +++++ KT + I+N + L SQ RVR PR S + LRP+ E+ G +LK A GK + Y+ + +I R++L Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23 Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733 +K+FGS IGNP+ A SLG G +DF PA ++KSP G+++GT+SL++N+V+ +D+ ++ + KG+V + D+ + ERQ + KG+ V +G+TG++ P K A ++ G GI GV G+ +P + ++ KT++ I+N + + + SQ R R+PR RE L Y+ +++G +L + YV L +I + +L++ C +L Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21 Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655 +YKV GS+ IGNP+G +G G++DF PA ++ SP G+A+G+ SL+ N+VY L + ++ S KG+ +FD+Q + +R + +A H +G++ V +G+TG++ P++ A K + G G+A GV G+ +P + ++ T + IRN + L++ M RC + L Y++E++ G +L+ G+ K+ + Y++ Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16 Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682 ++K+ GSA GNP+G ++ G+ D P + + + P + +A+G S TV+ LSD+ ++F+ + KG+ V + Q V R+++++ A+ ++ + + GL+G+ P K +K G G L G+ G+ GL + A L++T +Q +++ + + M + CRVRLPR + + ++PY EA G LK + G ++ Y+ L PGK Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16 Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502 +YK+ G+ + GNP+G + G+G ++F K ++ + QG+ SL ++VY + D+ + + +A K + + D++ + +ERQ + GE+ ++ +G+I V+ G +G ++ P + ++ G G++ GI G GLV +P A+ + K ++ I+N ++L Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14 Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748 ++ + GS+ + G+P+ F ++ G+ + + P G+ L+ +YA ++++++ G ++ DE + R + + K +A H SKG + +G+ G+++ PV+ A + GL G G GV G+ +P + + KT++ IRN + ++ +R R+R PR ++ P++ YS +E+ G +LK+ D K E +S ++ K+ ++ L++ SL+ L K Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13 Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718 MY + V+GNP G R L G+ P + ++ P G+ G SL +TV + ++ + + KG+ A T D++ + +L + A KG + V G+TG++ PV+ A+K G G GI G+ G V RP I+++ T Q I+ R + + +R PR + + +RPY +E+ G S L E KL+ E Y A+ K ++M T R VL + Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bpback to top |