g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009878
Unique Nameg.arboreum_cottongen_reftransV1_0009878
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1329
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009878:9..1329 .
Chr12:138584717..138586549 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 3.419e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3094          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CQW4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1)

HSP 1 Score: 450.284 bits (1157), Expect = 2.459e-138
Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VL+V   SL++LGKPEF G+  + EW++E EI L ++IH D+ +GVVHIVGS  ++LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL S+ED  N L++LLS IE+ K
Sbjct: 2166 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 2515          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CT20_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1)

HSP 1 Score: 450.669 bits (1158), Expect = 3.239e-138
Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VL+V   SL++LGKPEF G+  + EW++E EI L ++IH D+ +GVVHIVGS  ++LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL S+ED  N L++LLS IE+ K
Sbjct: 2694 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 3043          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A068V7W9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_139 OS=Coffea canephora GN=GSCOC_T00019457001 PE=4 SV=1)

HSP 1 Score: 446.047 bits (1146), Expect = 1.060e-136
Identity = 225/361 (62.33%), Postives = 289/361 (80.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADD-GKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYK+FGSAG+IGNP+GFARS+ +GI+DF++VP +++ +SP GL+TGMAQGTTSLLSNT+YA+SDAA+QFS+AAHKGIVAF  D Q V +M R+ KG +++SKG+INE  EGLTGLLQSPV+ AEKHGLPG++SGIALGVTGLV +PAASILEVTGKTAQSIRNRS++  +GSQR RVRLPR LS    L+PYSWEEA+G +VL+ A++  KL D++ +M KAL+  GK+VI+T+R +LVV+C SLVDLGKP+F+GV A+ EWV+E +I + SVIH   D+  VHIVGSS D   R +    +K   G    RWNN  +PLPLFQTNLE   +ED ++ L++LLSTIE+GK++G G  Y+L 
Sbjct: 2344 MYKLFGSAGLIGNPLGFARSVSLGIKDFVSVPVQNVFQSPVGLLTGMAQGTTSLLSNTLYAISDAASQFSRAAHKGIVAFALDNQNVGQMGREKKGISTNSKGVINEFLEGLTGLLQSPVQGAEKHGLPGVVSGIALGVTGLVAKPAASILEVTGKTAQSIRNRSKIPHVGSQRFRVRLPRALSEGCALKPYSWEEAIGTAVLRNAENVVKLGDQILIMCKALRQGGKFVIVTDRSILVVSCSSLVDLGKPDFQGVPASPEWVVEADIGMDSVIHATIDEYAVHIVGSSMDTFSRASPHQQQKHSQGSRVKRWNNYQSPLPLFQTNLEFACKEDAQDLLQMLLSTIEKGKDRGWGRTYILH 2704          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: R0GSB5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 4.725e-130
Identity = 232/353 (65.72%), Postives = 276/353 (78.19%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057
            +YKVFGSAGVIGNPMGFAR++  GI+DFL+ P +SI KSP G+I GMA GTTSLLS+TVYALSDAATQFSKAAHKGIVAFTF++  VARME+Q  GE SHSKG+I EVFEGLTGLLQSP++ AEKHGLPG++SG+A+G+TGLV RP ASILEVTGKTAQSIRNRSR++ + SQR R+RLPRPLSRE PLRPYSWEEAVG +VL E  D  K K E  V  KALK  G +V++T RLVLV++ PSL+D  KP F GV  +  W+IE EI L SVIHTD   GVV I+GS+SD + +  Q + +K      + RWNNPS   PL QTN+EL SEE+ ++ L VLLSTIE GK + 
Sbjct: 3108 IYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPGRSISKSPAGIIQGMAHGTTSLLSSTVYALSDAATQFSKAAHKGIVAFTFNDNDVARMEKQQLGEGSHSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGMAMGITGLVARPTASILEVTGKTAQSIRNRSRIHNIRSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEVGDSLKFKGEKLVKCKALKQEGAFVVITGRLVLVLSSPSLIDFRKPGFLGVPIDLVWIIEREIGLESVIHTDCSGGVVRIIGSNSDGVSKWRQDLQKK--SSPPRKRWNNPSAQ-PLLQTNIELPSEEEAEDLLTVLLSTIETGKSRS 3457          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25
Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712
             Y + GS   +GNP+G  R+ G G+ DF   PA+ ++KSP     G+A+GT+S + N+V+   +  ++ +     G+   +FDE+ +   ER+L          +G A    G+   + +G+TG++  PV+ A+K G  G   G+A GV G+  +P  +++++  KT + I+N + L    SQ  RVR PR  S +  LRP+   E+ G  +LK A  GK   + Y+    +      +I   R++L
Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23
Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733
            +K+FGS   IGNP+  A SLG G +DF   PA  ++KSP     G+++GT+SL++N+V+  +D+ ++ +    KG+V  + D+  +   ERQ +      KG+              V +G+TG++  P K A ++    G   GI  GV G+  +P   + ++  KT++ I+N + + +  SQ  R R+PR   RE  L  Y+  +++G  +L          + YV    L      +I +   +L++ C +L
Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21
Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655
            +YKV GS+  IGNP+G    +G G++DF   PA  ++ SP     G+A+G+ SL+ N+VY L +  ++ S    KG+   +FD+Q +   +R  + +A H  +G++         V +G+TG++  P++ A K  + G   G+A GV G+  +P   + ++   T + IRN + L++    M   RC          +  L  Y++E++ G  +L+    G+ K+ + Y++
Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16
Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682
            ++K+ GSA   GNP+G   ++  G+ D    P +  + +  P  +   +A+G  S    TV+ LSD+ ++F+ +  KG+ V    + Q V R+++++        A+ ++   + +  GL+G+   P K  +K G  G L G+  G+ GL  + A   L++T   +Q +++ + +  M  + CRVRLPR +  +  ++PY   EA G   LK  + G   ++ Y+    L  PGK
Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16
Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502
            +YK+ G+  + GNP+G   + G+G ++F     K ++ +         QG+ SL  ++VY + D+  + + +A K +   + D++ +  +ERQ + GE+ ++  +G+I         V+ G +G ++ P +  ++ G  G++ GI  G  GLV +P A+  +   K ++ I+N ++L
Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14
Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748
            ++ + GS+ + G+P+ F  ++  G+ + +  P                 G+  L+   +YA ++++++       G   ++ DE  + R + + K +A H        SKG    + +G+ G+++ PV+ A + GL G   G   GV G+  +P   + +   KT++ IRN + ++    +R R+R PR ++   P++ YS +E+ G  +LK+  D   K E   +S  ++   K+ ++     L++   SL+ L K
Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct:  382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13
Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718
            MY +     V+GNP G  R L  G+      P +  ++ P     G+  G  SL  +TV   +   ++ + +  KG+ A T D++   +   +L  +        A   KG +  V  G+TG++  PV+ A+K G  G   GI  G+ G V RP   I+++   T Q I+   R  +   +   +R PR +  +  +RPY  +E+ G S L E    KL+ E Y    A+    K ++M T R VL +
Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7M0B1_SOYBN3.419e-14169.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V7CQW4_PHAVU2.459e-13867.71Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
V7CT20_PHAVU3.239e-13867.71Uncharacterized protein (Fragment) OS=Phaseolus vu... [more]
A0A068V7W9_COFCA1.060e-13662.33Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
R0GSB5_9BRAS4.725e-13065.72Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VP13A_DICDI1.426e-2530.77Putative vacuolar protein sorting-associated prote... [more]
VP13C_DICDI5.078e-2329.02Putative vacuolar protein sorting-associated prote... [more]
VP13D_DICDI1.168e-2129.00Putative vacuolar protein sorting-associated prote... [more]
VPS13_YEAST7.030e-1628.09Vacuolar protein sorting-associated protein 13 OS=... [more]
VP13E_DICDI7.409e-1625.99Putative vacuolar protein sorting-associated prote... [more]
VP13B_DICDI2.429e-1423.74Putative vacuolar protein sorting-associated prote... [more]
VP13A_MACFA2.845e-1429.67Vacuolar protein sorting-associated protein 13A (F... [more]
VP13A_MOUSE4.299e-1429.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13A_HUMAN1.244e-1329.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13C_HUMAN5.787e-1328.63Vacuolar protein sorting-associated protein 13C OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1..85
e-value: 2.0E-25
score: 89.4
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..363
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..363

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bp
GATGTACAAGGTGTTTGGCTCTGCTGGTGTTATTGGCAATCCCATGGGAT
TTGCTAGGAGTCTAGGTGTAGGAATTAGAGATTTCTTAGCAGTTCCTGCA
AAGAGTATTTTGAAGAGTCCCACTGGACTTATCACAGGCATGGCTCAAGG
TACTACTAGTCTTCTGAGCAATACGGTCTATGCACTAAGTGATGCTGCCA
CTCAGTTCAGTAAAGCTGCACACAAGGGTATTGTTGCATTTACATTTGAT
GAGCAGGCTGTTGCAAGAATGGAAAGGCAATTGAAAGGGGAGGCTTCACA
CAGTAAAGGCATAATTAATGAAGTTTTTGAGGGACTTACTGGCCTCCTTC
AATCGCCAGTTAAAGAAGCAGAGAAACATGGCCTACCTGGAATCCTCTCA
GGAATAGCTTTGGGAGTAACAGGACTAGTGGGAAGACCAGCTGCTAGTAT
ACTTGAGGTTACTGGAAAAACTGCACAGAGTATTAGAAACAGAAGCAGAT
TATACCAAATGGGTTCGCAACGTTGTAGAGTTCGTTTGCCAAGGCCTTTA
AGCAGAGAACTTCCTTTGAGGCCTTACTCTTGGGAAGAAGCTGTTGGAAT
ATCGGTGCTTAAGGAAGCTGATGATGGCAAGCTCAAGGATGAAGTCTATG
TCATGTCCAAGGCACTTAAAAACCCCGGTAAATATGTCATCATGACAGAG
AGACTTGTGTTGGTTGTTAATTGCCCGAGTCTGGTGGACTTGGGGAAACC
TGAATTCCGAGGTGTTGCAGCTAATCAAGAGTGGGTGATAGAAACAGAAA
TTAGCCTGCATAGTGTAATCCACACTGATGCTGATGATGGTGTGGTACAT
ATTGTTGGAAGCAGTTCAGATGCATTGTTAAGACAGAATCAGCAGATGTC
GAGGAAGGGTGGTGGCGGTGGGACGAAGATGCGGTGGAATAATCCATCAA
CTCCGCTTCCACTTTTTCAGACCAACTTGGAACTGGAATCAGAAGAAGAC
ACAAAGAACTTTTTACGGGTTTTGCTTTCTACAATTGAACAGGGGAAAGA
GCAAGGGGGAAGTGAATATCTATTGCAGAGAAGTAGTATCAGGTAGATTT
CCTTTATTAGTTCCTTTTCTGTAAGCCTTTTTCACCCCAGTAAGAACAGG
AGAATATATATAATTAAAAACAAAGGTCCCTAACATATAGTTCACAAAAA
AAGAAAGAAAGAGAGGAAATAGCTAGATAAGAGTTGAGCTGGAAAGCATT
TGGTTTTTACTCTTGCATTTATTCATTCTCGTGTATAGTTTGTACAAAAT
TATATTTTACAACAGTAGATATATACAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_DH-like
IPR026847VPS13