g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 3.419e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3094
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CQW4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1) HSP 1 Score: 450.284 bits (1157), Expect = 2.459e-138 Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VL+V SL++LGKPEF G+ + EW++E EI L ++IH D+ +GVVHIVGS ++LLRQNQ + G GG T+ +RWN +T LP QTNLEL S+ED N L++LLS IE+ K Sbjct: 2166 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 2515
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CT20_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1) HSP 1 Score: 450.669 bits (1158), Expect = 3.239e-138 Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VL+V SL++LGKPEF G+ + EW++E EI L ++IH D+ +GVVHIVGS ++LLRQNQ + G GG T+ +RWN +T LP QTNLEL S+ED N L++LLS IE+ K Sbjct: 2694 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 3043
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A068V7W9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_139 OS=Coffea canephora GN=GSCOC_T00019457001 PE=4 SV=1) HSP 1 Score: 446.047 bits (1146), Expect = 1.060e-136 Identity = 225/361 (62.33%), Postives = 289/361 (80.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADD-GKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYK+FGSAG+IGNP+GFARS+ +GI+DF++VP +++ +SP GL+TGMAQGTTSLLSNT+YA+SDAA+QFS+AAHKGIVAF D Q V +M R+ KG +++SKG+INE EGLTGLLQSPV+ AEKHGLPG++SGIALGVTGLV +PAASILEVTGKTAQSIRNRS++ +GSQR RVRLPR LS L+PYSWEEA+G +VL+ A++ KL D++ +M KAL+ GK+VI+T+R +LVV+C SLVDLGKP+F+GV A+ EWV+E +I + SVIH D+ VHIVGSS D R + +K G RWNN +PLPLFQTNLE +ED ++ L++LLSTIE+GK++G G Y+L Sbjct: 2344 MYKLFGSAGLIGNPLGFARSVSLGIKDFVSVPVQNVFQSPVGLLTGMAQGTTSLLSNTLYAISDAASQFSRAAHKGIVAFALDNQNVGQMGREKKGISTNSKGVINEFLEGLTGLLQSPVQGAEKHGLPGVVSGIALGVTGLVAKPAASILEVTGKTAQSIRNRSKIPHVGSQRFRVRLPRALSEGCALKPYSWEEAIGTAVLRNAENVVKLGDQILIMCKALRQGGKFVIVTDRSILVVSCSSLVDLGKPDFQGVPASPEWVVEADIGMDSVIHATIDEYAVHIVGSSMDTFSRASPHQQQKHSQGSRVKRWNNYQSPLPLFQTNLEFACKEDAQDLLQMLLSTIEKGKDRGWGRTYILH 2704
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: R0GSB5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1) HSP 1 Score: 427.557 bits (1098), Expect = 4.725e-130 Identity = 232/353 (65.72%), Postives = 276/353 (78.19%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057 +YKVFGSAGVIGNPMGFAR++ GI+DFL+ P +SI KSP G+I GMA GTTSLLS+TVYALSDAATQFSKAAHKGIVAFTF++ VARME+Q GE SHSKG+I EVFEGLTGLLQSP++ AEKHGLPG++SG+A+G+TGLV RP ASILEVTGKTAQSIRNRSR++ + SQR R+RLPRPLSRE PLRPYSWEEAVG +VL E D K K E V KALK G +V++T RLVLV++ PSL+D KP F GV + W+IE EI L SVIHTD GVV I+GS+SD + + Q + +K + RWNNPS PL QTN+EL SEE+ ++ L VLLSTIE GK + Sbjct: 3108 IYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPGRSISKSPAGIIQGMAHGTTSLLSSTVYALSDAATQFSKAAHKGIVAFTFNDNDVARMEKQQLGEGSHSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGMAMGITGLVARPTASILEVTGKTAQSIRNRSRIHNIRSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEVGDSLKFKGEKLVKCKALKQEGAFVVITGRLVLVLSSPSLIDFRKPGFLGVPIDLVWIIEREIGLESVIHTDCSGGVVRIIGSNSDGVSKWRQDLQKK--SSPPRKRWNNPSAQ-PLLQTNIELPSEEEAEDLLTVLLSTIETGKSRS 3457
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_MOUSE (Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 9.274e-13 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQLK----GEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIR 487 MY + V+GNP G R L G+ P + ++ P G+ G SL+ +TV + ++ + + KG+ A T D++ + M RQ K A KG + V G+TG++ PV+ A+K G G GI G+ G V RP I+++ T Q I+ Sbjct: 3408 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQ 3577
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_SCHPO (Vacuolar protein sorting-associated protein 13b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13b PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.025e-12 Identity = 58/247 (23.48%), Postives = 116/247 (46.96%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKS-ILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQ---------AVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712 +YK+ G A +GNP+G ++ G+ D P + +L+ A+GT+S + T+Y +SD+ ++ + KG+ T D + + R + + G + + + + G GL + P + + + L G G+ GL +PA +L++T ++ IRN + + + + +VR+PR + + P+ E++G +L DDGK + Y+ ++N I T+ ++ Sbjct: 2688 IYKIAGRADFLGNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSFGDSFARGTSSFMRKTIYGVSDSVSKITGTISKGLSTMTMDPKYQNSRRRFRSRNRPKEAVYGVTAGANSFYDSMSSGFKGL-KKPFTDPKNNSAGKFLKGFGKGMLGLATKPAIGLLDMTSNVSEGIRNSTDV-RTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFII 2932
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 8.983e-12 Identity = 50/210 (23.81%), Postives = 94/210 (44.76%), Query Frame = 2 Query: 11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586 V GS ++G+P RS+G GI DF +P + + + P ++G+++GTTS + + + T + + + + + DE+ R E RQL GE +G+ + + G++ P++ +K H G++SG+ G+ G+ +P E+ +T I + + L Q+ QRC+ Y W+ Sbjct: 3642 VVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWK 3850
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_SCHPO (Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.366e-11 Identity = 58/263 (22.05%), Postives = 119/263 (45.25%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSIL--KSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ---------LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLY-QMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLV----VNCPSLVDL 742 ++K+ GSA +GNP+G ++ G D P + + L G A+GT S + V+ ++D+ ++ + + + T D + +R L G + + + V G+ GL P+ A ++GLPG++ G+ G+ G +P + + ++ RN + ++ + ++ R+ R +S + + P+ EA+G LK D+G+ + Y ++N ++ R++ V +NC + L Sbjct: 2751 VHKIVGSADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGSYELGIGFAKGTASFIKKAVFGITDSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGLVGFTTKPLVGLFDFASSISEGARNTTTVFDERHIEKLRL--SRLMSDDGVVYPFQLREALGQYWLKHLDNGRYFKDFYKAHIIIENKVLVILTNNRILFVQPQQLNCKKEIHL 3011
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 3.861e-10 Identity = 48/210 (22.86%), Postives = 93/210 (44.29%), Query Frame = 2 Query: 11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586 V GS ++G+P RS+G G+ DF +P + + + P ++G+++GTTS + + + T + + + + + DE+ R E RQL GE +G+ + + G++ P++ +K H G++SG+ G+ G+ +P E+ +T I + + L Q+ QR + Y W+ Sbjct: 3650 VVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWK 3858 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bpback to top |