g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009878
Unique Nameg.arboreum_cottongen_reftransV1_0009878
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1329
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009878:9..1329 .
Chr12:138584717..138586549 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 3.419e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3094          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CQW4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1)

HSP 1 Score: 450.284 bits (1157), Expect = 2.459e-138
Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VL+V   SL++LGKPEF G+  + EW++E EI L ++IH D+ +GVVHIVGS  ++LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL S+ED  N L++LLS IE+ K
Sbjct: 2166 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 2515          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V7CT20_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G3286000g PE=4 SV=1)

HSP 1 Score: 450.669 bits (1158), Expect = 3.239e-138
Identity = 237/350 (67.71%), Postives = 283/350 (80.86%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPT LI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VL+V   SL++LGKPEF G+  + EW++E EI L ++IH D+ +GVVHIVGS  ++LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL S+ED  N L++LLS IE+ K
Sbjct: 2694 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTALIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQTTVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRPQHYRVRLRRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVLTERFVLIVFSASLMNLGKPEFCGIPVDLEWIVEWEIGLENIIHADSSEGVVHIVGSRPESLLRQNQHSPKGGSGGRTRSVRWNQYATHLPFPQTNLELASKEDAANLLQILLSAIEKEK 3043          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A068V7W9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_139 OS=Coffea canephora GN=GSCOC_T00019457001 PE=4 SV=1)

HSP 1 Score: 446.047 bits (1146), Expect = 1.060e-136
Identity = 225/361 (62.33%), Postives = 289/361 (80.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADD-GKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYK+FGSAG+IGNP+GFARS+ +GI+DF++VP +++ +SP GL+TGMAQGTTSLLSNT+YA+SDAA+QFS+AAHKGIVAF  D Q V +M R+ KG +++SKG+INE  EGLTGLLQSPV+ AEKHGLPG++SGIALGVTGLV +PAASILEVTGKTAQSIRNRS++  +GSQR RVRLPR LS    L+PYSWEEA+G +VL+ A++  KL D++ +M KAL+  GK+VI+T+R +LVV+C SLVDLGKP+F+GV A+ EWV+E +I + SVIH   D+  VHIVGSS D   R +    +K   G    RWNN  +PLPLFQTNLE   +ED ++ L++LLSTIE+GK++G G  Y+L 
Sbjct: 2344 MYKLFGSAGLIGNPLGFARSVSLGIKDFVSVPVQNVFQSPVGLLTGMAQGTTSLLSNTLYAISDAASQFSRAAHKGIVAFALDNQNVGQMGREKKGISTNSKGVINEFLEGLTGLLQSPVQGAEKHGLPGVVSGIALGVTGLVAKPAASILEVTGKTAQSIRNRSKIPHVGSQRFRVRLPRALSEGCALKPYSWEEAIGTAVLRNAENVVKLGDQILIMCKALRQGGKFVIVTDRSILVVSCSSLVDLGKPDFQGVPASPEWVVEADIGMDSVIHATIDEYAVHIVGSSMDTFSRASPHQQQKHSQGSRVKRWNNYQSPLPLFQTNLEFACKEDAQDLLQMLLSTIEKGKDRGWGRTYILH 2704          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: R0GSB5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 4.725e-130
Identity = 232/353 (65.72%), Postives = 276/353 (78.19%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057
            +YKVFGSAGVIGNPMGFAR++  GI+DFL+ P +SI KSP G+I GMA GTTSLLS+TVYALSDAATQFSKAAHKGIVAFTF++  VARME+Q  GE SHSKG+I EVFEGLTGLLQSP++ AEKHGLPG++SG+A+G+TGLV RP ASILEVTGKTAQSIRNRSR++ + SQR R+RLPRPLSRE PLRPYSWEEAVG +VL E  D  K K E  V  KALK  G +V++T RLVLV++ PSL+D  KP F GV  +  W+IE EI L SVIHTD   GVV I+GS+SD + +  Q + +K      + RWNNPS   PL QTN+EL SEE+ ++ L VLLSTIE GK + 
Sbjct: 3108 IYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPGRSISKSPAGIIQGMAHGTTSLLSSTVYALSDAATQFSKAAHKGIVAFTFNDNDVARMEKQQLGEGSHSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGMAMGITGLVARPTASILEVTGKTAQSIRNRSRIHNIRSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEVGDSLKFKGEKLVKCKALKQEGAFVVITGRLVLVLSSPSLIDFRKPGFLGVPIDLVWIIEREIGLESVIHTDCSGGVVRIIGSNSDGVSKWRQDLQKK--SSPPRKRWNNPSAQ-PLLQTNIELPSEEEAEDLLTVLLSTIETGKSRS 3457          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_MOUSE (Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 9.274e-13
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQLK----GEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIR 487
            MY +     V+GNP G  R L  G+      P +  ++ P     G+  G  SL+ +TV   +   ++ + +  KG+ A T D++   +    M RQ K      A   KG +  V  G+TG++  PV+ A+K G  G   GI  G+ G V RP   I+++   T Q I+
Sbjct: 3408 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQ 3577          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_SCHPO (Vacuolar protein sorting-associated protein 13b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13b PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.025e-12
Identity = 58/247 (23.48%), Postives = 116/247 (46.96%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKS-ILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQ---------AVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712
            +YK+ G A  +GNP+G   ++  G+ D    P +  +L+         A+GT+S +  T+Y +SD+ ++ +    KG+   T D +         +  R +  + G  + +    + +  G  GL + P  + + +     L G   G+ GL  +PA  +L++T   ++ IRN + + +   +  +VR+PR +     + P+   E++G  +L   DDGK   + Y+    ++N     I T+  ++
Sbjct: 2688 IYKIAGRADFLGNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSFGDSFARGTSSFMRKTIYGVSDSVSKITGTISKGLSTMTMDPKYQNSRRRFRSRNRPKEAVYGVTAGANSFYDSMSSGFKGL-KKPFTDPKNNSAGKFLKGFGKGMLGLATKPAIGLLDMTSNVSEGIRNSTDV-RTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFII 2932          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.983e-12
Identity = 50/210 (23.81%), Postives = 94/210 (44.76%), Query Frame = 2
Query:   11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586
            V GS  ++G+P    RS+G GI DF  +P + + + P   ++G+++GTTS + +       + T  + +  + +   + DE+   R E   RQL    GE    +G+      +   + G++  P++  +K         H   G++SG+  G+ G+  +P     E+  +T   I + + L Q+  QRC+               Y W+
Sbjct: 3642 VVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWK 3850          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_SCHPO (Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.366e-11
Identity = 58/263 (22.05%), Postives = 119/263 (45.25%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSIL--KSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ---------LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLY-QMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLV----VNCPSLVDL 742
            ++K+ GSA  +GNP+G   ++  G  D    P    +  +    L  G A+GT S +   V+ ++D+ ++ +    + +   T D +  +R             L G  + +  +   V  G+ GL   P+  A ++GLPG++ G+  G+ G   +P   + +     ++  RN + ++ +   ++ R+   R +S +  + P+   EA+G   LK  D+G+   + Y     ++N    ++   R++ V    +NC   + L
Sbjct: 2751 VHKIVGSADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGSYELGIGFAKGTASFIKKAVFGITDSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGLVGFTTKPLVGLFDFASSISEGARNTTTVFDERHIEKLRL--SRLMSDDGVVYPFQLREALGQYWLKHLDNGRYFKDFYKAHIIIENKVLVILTNNRILFVQPQQLNCKKEIHL 3011          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 3.861e-10
Identity = 48/210 (22.86%), Postives = 93/210 (44.29%), Query Frame = 2
Query:   11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586
            V GS  ++G+P    RS+G G+ DF  +P + + + P   ++G+++GTTS + +       + T  + +  + +   + DE+   R E   RQL    GE    +G+      +   + G++  P++  +K         H   G++SG+  G+ G+  +P     E+  +T   I + + L Q+  QR +               Y W+
Sbjct: 3650 VVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWK 3858          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7M0B1_SOYBN3.419e-14169.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V7CQW4_PHAVU2.459e-13867.71Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
V7CT20_PHAVU3.239e-13867.71Uncharacterized protein (Fragment) OS=Phaseolus vu... [more]
A0A068V7W9_COFCA1.060e-13662.33Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
R0GSB5_9BRAS4.725e-13065.72Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VP13C_MOUSE9.274e-1330.00Vacuolar protein sorting-associated protein 13C OS... [more]
VP13B_SCHPO7.025e-1223.48Vacuolar protein sorting-associated protein 13b OS... [more]
VP13B_MOUSE8.983e-1223.81Vacuolar protein sorting-associated protein 13B OS... [more]
VP13A_SCHPO2.366e-1122.05Vacuolar protein sorting-associated protein 13a OS... [more]
VP13B_HUMAN3.861e-1022.86Vacuolar protein sorting-associated protein 13B OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1..85
e-value: 2.0E-25
score: 89.4
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..363
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..363

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bp
GATGTACAAGGTGTTTGGCTCTGCTGGTGTTATTGGCAATCCCATGGGAT
TTGCTAGGAGTCTAGGTGTAGGAATTAGAGATTTCTTAGCAGTTCCTGCA
AAGAGTATTTTGAAGAGTCCCACTGGACTTATCACAGGCATGGCTCAAGG
TACTACTAGTCTTCTGAGCAATACGGTCTATGCACTAAGTGATGCTGCCA
CTCAGTTCAGTAAAGCTGCACACAAGGGTATTGTTGCATTTACATTTGAT
GAGCAGGCTGTTGCAAGAATGGAAAGGCAATTGAAAGGGGAGGCTTCACA
CAGTAAAGGCATAATTAATGAAGTTTTTGAGGGACTTACTGGCCTCCTTC
AATCGCCAGTTAAAGAAGCAGAGAAACATGGCCTACCTGGAATCCTCTCA
GGAATAGCTTTGGGAGTAACAGGACTAGTGGGAAGACCAGCTGCTAGTAT
ACTTGAGGTTACTGGAAAAACTGCACAGAGTATTAGAAACAGAAGCAGAT
TATACCAAATGGGTTCGCAACGTTGTAGAGTTCGTTTGCCAAGGCCTTTA
AGCAGAGAACTTCCTTTGAGGCCTTACTCTTGGGAAGAAGCTGTTGGAAT
ATCGGTGCTTAAGGAAGCTGATGATGGCAAGCTCAAGGATGAAGTCTATG
TCATGTCCAAGGCACTTAAAAACCCCGGTAAATATGTCATCATGACAGAG
AGACTTGTGTTGGTTGTTAATTGCCCGAGTCTGGTGGACTTGGGGAAACC
TGAATTCCGAGGTGTTGCAGCTAATCAAGAGTGGGTGATAGAAACAGAAA
TTAGCCTGCATAGTGTAATCCACACTGATGCTGATGATGGTGTGGTACAT
ATTGTTGGAAGCAGTTCAGATGCATTGTTAAGACAGAATCAGCAGATGTC
GAGGAAGGGTGGTGGCGGTGGGACGAAGATGCGGTGGAATAATCCATCAA
CTCCGCTTCCACTTTTTCAGACCAACTTGGAACTGGAATCAGAAGAAGAC
ACAAAGAACTTTTTACGGGTTTTGCTTTCTACAATTGAACAGGGGAAAGA
GCAAGGGGGAAGTGAATATCTATTGCAGAGAAGTAGTATCAGGTAGATTT
CCTTTATTAGTTCCTTTTCTGTAAGCCTTTTTCACCCCAGTAAGAACAGG
AGAATATATATAATTAAAAACAAAGGTCCCTAACATATAGTTCACAAAAA
AAGAAAGAAAGAGAGGAAATAGCTAGATAAGAGTTGAGCTGGAAAGCATT
TGGTTTTTACTCTTGCATTTATTCATTCTCGTGTATAGTTTGTACAAAAT
TATATTTTACAACAGTAGATATATACAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_DH-like
IPR026847VPS13