g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1) HSP 1 Score: 501.516 bits (1290), Expect = 9.860e-156 Identity = 268/361 (74.24%), Postives = 312/361 (86.43%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVF SAGVIGNPMGFAR+LG+GIRDFL+VPA+SI++SPTG+ITGMAQGTTSLLSNTVYALSDAATQFSKAA KGIVAFTFD+Q+ RME+Q KG + HSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVTGLV RPAASILEVTGKTA+SIRNRS+LYQ+GSQ+ RVRLPRPL+RELPLRPYS EEAVG SVL E DD KLKDEV++M K+LK GK+V++TERL+++V+C SLVDLGKPEF+GV A+ EWV+E+EI L S+IH D + VVHIVGSSSD LLRQN S++GGG TK W++ ST LPLFQTNLEL S +D ++ L +LLS IE GK +G GS YLL Sbjct: 3105 MYKVFASAGVIGNPMGFARNLGLGIRDFLSVPARSIMQSPTGIITGMAQGTTSLLSNTVYALSDAATQFSKAARKGIVAFTFDDQS--RMEKQQKGVSLHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTGLVARPAASILEVTGKTAESIRNRSKLYQIGSQQYRVRLPRPLNRELPLRPYSLEEAVGTSVLMEVDDDLKLKDEVFMMCKSLKQAGKFVVITERLIMIVSCSSLVDLGKPEFQGVPADPEWVVESEIGLDSLIHADKVEEVVHIVGSSSDGLLRQNHHQSKRGGGTRTK-HWSSHSTRLPLFQTNLELASNKDAEDLLEMLLSIIELGKGRGWGSAYLLH 3462
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1) HSP 1 Score: 499.975 bits (1286), Expect = 1.400e-155 Identity = 276/361 (76.45%), Postives = 306/361 (84.76%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGTTSL+SNTVYALSDAATQFSKAA KGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GV GLV RPAASILEVTGKTAQSIRNRSRLYQMG Q RVRLPRPLSRELPLRPYS EEAVG SVL EADDG LK+EV V+ K+LK GK+V++TERLVL V+ P LVDLGKPEFRGV + EW++E+EISL SVIH DA + VVHIVG+ SDALL+QNQ S+KG TK WNN T LPL TNLEL S D K L++LLSTI QGKE+ GS Y+L Sbjct: 2340 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTTSLVSNTVYALSDAATQFSKAAQKGIVAFTFDDQSVARMEKQQKGAASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIAFGVAGLVARPAASILEVTGKTAQSIRNRSRLYQMGPQCYRVRLPRPLSRELPLRPYSLEEAVGTSVLMEADDGLYLKNEVLVICKSLKQAGKFVVVTERLVLTVSSPGLVDLGKPEFRGVPIDPEWLVESEISLDSVIHVDAVEEVVHIVGTRSDALLKQNQHQSKKGVLTRTK-SWNN-RTSLPLSLTNLELASMNDAKELLQILLSTIAQGKERRLGSGYVLH 2698
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: F6I5I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=1) HSP 1 Score: 474.167 bits (1219), Expect = 9.474e-147 Identity = 264/361 (73.13%), Postives = 304/361 (84.21%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNP+GF RS+G+GI+DFL+ PA+S+L+SPTGLITGMAQGTTSLLS+TVYA+SDAATQFSKAAHKGIVAFTFD+QA ME+Q K ASHSKG+INE+ EGLTGLLQSP+K AEKHGLPG+LSG+ALG+TGLV RPAASILEVTGKTAQSIRNRSRLYQMG++R RVRLPRPLSRELPL PYSWEEAVG SVL +ADD +LK+EV + KALK GK+ I+TERL+L+V+C SLV LGKPEF+GV A EWVIE EI L SVIH D DD V+HIVGSSS+ +L Q Q RK G TK +WNNP TPLP FQT+LE +ED + L++LLS IEQGKE+G GS YLL Sbjct: 2133 MYKVFGSAGVIGNPVGFIRSVGLGIKDFLSAPARSVLQSPTGLITGMAQGTTSLLSSTVYAISDAATQFSKAAHKGIVAFTFDDQAAGIMEKQQKSVASHSKGVINELLEGLTGLLQSPIKGAEKHGLPGVLSGVALGLTGLVARPAASILEVTGKTAQSIRNRSRLYQMGARRLRVRLPRPLSRELPLMPYSWEEAVGASVLADADDELRLKEEVLITCKALKQDGKFFIITERLILIVSCSSLVGLGKPEFQGVPATPEWVIEAEIGLESVIHADTDDAVIHIVGSSSETMLGQTHQPQRKSTGMRTK-QWNNPPTPLPFFQTSLEFVCKEDAEELLQILLSAIEQGKERGWGSGYLLH 2492
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1) HSP 1 Score: 426.787 bits (1096), Expect = 1.138e-143 Identity = 230/343 (67.06%), Postives = 276/343 (80.47%), Query Frame = 2 Query: 44 MGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEA--DDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDA--DDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057 MGFAR LG+GIRDFL+VPAK+IL+SPTGLITGM QGTTSLLSNTVYA SDA TQFSKAA KGIVAFTFD+QA +R+ +Q G + +S G+I+EV EGLTGLLQSP++ AE+HGLPG+ SGIALG+TGLV +PAAS+LE+TGKTAQSIRNRSRLYQM QR RVRLPRPLS LPLRPYSWEEA+G SVL EA DD KL DEV V KALK GK+V++T+ L+L+V+C SLVDLGKPEFRG+AA+ +WVIE+ I L +VIH D D VHIVGSSSD L R N+ + ++ G ++ +RW P TPLP+F+T LELE +ED +N L+ LLS IE K+ G Sbjct: 1 MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKFVVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVGSSSDLLSRPNKSLQKRVIGRSSRAVRWTGP-TPLPIFETILELELKEDAENLLKTLLSAIELAKDWG 342
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022R1Q0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0233772mg PE=4 SV=1) HSP 1 Score: 437.573 bits (1124), Expect = 8.170e-143 Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q ++RQ KG +SHSKG+INE EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG + RVRLPRPLS E PL+PYSWEEA+G VL EA D KL++E +M K LK G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI + VI D D VVHIVGS SD RQ+ Q G K+R +N PLPL QTNLE S E+ FLRVL IE GKEQG GS Y+L Sbjct: 363 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 716
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 462.225 bits (1188), Expect = 4.131e-142 Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Q S Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3099
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 5.086e-142 Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Q S Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3070
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022PP19_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0005352mg PE=4 SV=1) HSP 1 Score: 436.802 bits (1122), Expect = 5.652e-142 Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q ++RQ KG +SHSKG+INE EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG + RVRLPRPLS E PL+PYSWEEA+G VL EA D KL++E +M K LK G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI + VI D D VVHIVGS SD RQ+ Q G K+R +N PLPL QTNLE S E+ FLRVL IE GKEQG GS Y+L Sbjct: 412 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 765
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 2.805e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3065
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0B2PLF6_GLYSO (Putative vacuolar protein sorting-associated protein 13A OS=Glycine soja GN=glysoja_026860 PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 2.955e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2520 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 2869
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25 Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712 Y + GS +GNP+G R+ G G+ DF PA+ ++KSP G+A+GT+S + N+V+ + ++ + G+ +FDE+ + ER+L +G A G+ + +G+TG++ PV+ A+K G G G+A GV G+ +P +++++ KT + I+N + L SQ RVR PR S + LRP+ E+ G +LK A GK + Y+ + +I R++L Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23 Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733 +K+FGS IGNP+ A SLG G +DF PA ++KSP G+++GT+SL++N+V+ +D+ ++ + KG+V + D+ + ERQ + KG+ V +G+TG++ P K A ++ G GI GV G+ +P + ++ KT++ I+N + + + SQ R R+PR RE L Y+ +++G +L + YV L +I + +L++ C +L Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21 Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655 +YKV GS+ IGNP+G +G G++DF PA ++ SP G+A+G+ SL+ N+VY L + ++ S KG+ +FD+Q + +R + +A H +G++ V +G+TG++ P++ A K + G G+A GV G+ +P + ++ T + IRN + L++ M RC + L Y++E++ G +L+ G+ K+ + Y++ Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16 Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682 ++K+ GSA GNP+G ++ G+ D P + + + P + +A+G S TV+ LSD+ ++F+ + KG+ V + Q V R+++++ A+ ++ + + GL+G+ P K +K G G L G+ G+ GL + A L++T +Q +++ + + M + CRVRLPR + + ++PY EA G LK + G ++ Y+ L PGK Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16 Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502 +YK+ G+ + GNP+G + G+G ++F K ++ + QG+ SL ++VY + D+ + + +A K + + D++ + +ERQ + GE+ ++ +G+I V+ G +G ++ P + ++ G G++ GI G GLV +P A+ + K ++ I+N ++L Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14 Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748 ++ + GS+ + G+P+ F ++ G+ + + P G+ L+ +YA ++++++ G ++ DE + R + + K +A H SKG + +G+ G+++ PV+ A + GL G G GV G+ +P + + KT++ IRN + ++ +R R+R PR ++ P++ YS +E+ G +LK+ D K E +S ++ K+ ++ L++ SL+ L K Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13 Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718 MY + V+GNP G R L G+ P + ++ P G+ G SL +TV + ++ + + KG+ A T D++ + +L + A KG + V G+TG++ PV+ A+K G G GI G+ G V RP I+++ T Q I+ R + + +R PR + + +RPY +E+ G S L E KL+ E Y A+ K ++M T R VL + Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bpback to top |