g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009878
Unique Nameg.arboreum_cottongen_reftransV1_0009878
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1329
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009878:9..1329 .
Chr12:138584717..138586549 -		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1)

HSP 1 Score: 501.516 bits (1290), Expect = 9.860e-156
Identity = 268/361 (74.24%), Postives = 312/361 (86.43%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVF SAGVIGNPMGFAR+LG+GIRDFL+VPA+SI++SPTG+ITGMAQGTTSLLSNTVYALSDAATQFSKAA KGIVAFTFD+Q+  RME+Q KG + HSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVTGLV RPAASILEVTGKTA+SIRNRS+LYQ+GSQ+ RVRLPRPL+RELPLRPYS EEAVG SVL E DD  KLKDEV++M K+LK  GK+V++TERL+++V+C SLVDLGKPEF+GV A+ EWV+E+EI L S+IH D  + VVHIVGSSSD LLRQN   S++GGG  TK  W++ ST LPLFQTNLEL S +D ++ L +LLS IE GK +G GS YLL 
Sbjct: 3105 MYKVFASAGVIGNPMGFARNLGLGIRDFLSVPARSIMQSPTGIITGMAQGTTSLLSNTVYALSDAATQFSKAARKGIVAFTFDDQS--RMEKQQKGVSLHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTGLVARPAASILEVTGKTAESIRNRSKLYQIGSQQYRVRLPRPLNRELPLRPYSLEEAVGTSVLMEVDDDLKLKDEVFMMCKSLKQAGKFVVITERLIMIVSCSSLVDLGKPEFQGVPADPEWVVESEIGLDSLIHADKVEEVVHIVGSSSDGLLRQNHHQSKRGGGTRTK-HWSSHSTRLPLFQTNLELASNKDAEDLLEMLLSIIELGKGRGWGSAYLLH 3462
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1)

HSP 1 Score: 499.975 bits (1286), Expect = 1.400e-155
Identity = 276/361 (76.45%), Postives = 306/361 (84.76%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGTTSL+SNTVYALSDAATQFSKAA KGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GV GLV RPAASILEVTGKTAQSIRNRSRLYQMG Q  RVRLPRPLSRELPLRPYS EEAVG SVL EADDG  LK+EV V+ K+LK  GK+V++TERLVL V+ P LVDLGKPEFRGV  + EW++E+EISL SVIH DA + VVHIVG+ SDALL+QNQ  S+KG    TK  WNN  T LPL  TNLEL S  D K  L++LLSTI QGKE+  GS Y+L 
Sbjct: 2340 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTTSLVSNTVYALSDAATQFSKAAQKGIVAFTFDDQSVARMEKQQKGAASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIAFGVAGLVARPAASILEVTGKTAQSIRNRSRLYQMGPQCYRVRLPRPLSRELPLRPYSLEEAVGTSVLMEADDGLYLKNEVLVICKSLKQAGKFVVVTERLVLTVSSPGLVDLGKPEFRGVPIDPEWLVESEISLDSVIHVDAVEEVVHIVGTRSDALLKQNQHQSKKGVLTRTK-SWNN-RTSLPLSLTNLELASMNDAKELLQILLSTIAQGKERRLGSGYVLH 2698
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: F6I5I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=1)

HSP 1 Score: 474.167 bits (1219), Expect = 9.474e-147
Identity = 264/361 (73.13%), Postives = 304/361 (84.21%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNP+GF RS+G+GI+DFL+ PA+S+L+SPTGLITGMAQGTTSLLS+TVYA+SDAATQFSKAAHKGIVAFTFD+QA   ME+Q K  ASHSKG+INE+ EGLTGLLQSP+K AEKHGLPG+LSG+ALG+TGLV RPAASILEVTGKTAQSIRNRSRLYQMG++R RVRLPRPLSRELPL PYSWEEAVG SVL +ADD  +LK+EV +  KALK  GK+ I+TERL+L+V+C SLV LGKPEF+GV A  EWVIE EI L SVIH D DD V+HIVGSSS+ +L Q  Q  RK  G  TK +WNNP TPLP FQT+LE   +ED +  L++LLS IEQGKE+G GS YLL 
Sbjct: 2133 MYKVFGSAGVIGNPVGFIRSVGLGIKDFLSAPARSVLQSPTGLITGMAQGTTSLLSSTVYAISDAATQFSKAAHKGIVAFTFDDQAAGIMEKQQKSVASHSKGVINELLEGLTGLLQSPIKGAEKHGLPGVLSGVALGLTGLVARPAASILEVTGKTAQSIRNRSRLYQMGARRLRVRLPRPLSRELPLMPYSWEEAVGASVLADADDELRLKEEVLITCKALKQDGKFFIITERLILIVSCSSLVGLGKPEFQGVPATPEWVIEAEIGLESVIHADTDDAVIHIVGSSSETMLGQTHQPQRKSTGMRTK-QWNNPPTPLPFFQTSLEFVCKEDAEELLQILLSAIEQGKERGWGSGYLLH 2492
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 1.138e-143
Identity = 230/343 (67.06%), Postives = 276/343 (80.47%), Query Frame = 2 
Query:   44 MGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEA--DDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDA--DDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057
            MGFAR LG+GIRDFL+VPAK+IL+SPTGLITGM QGTTSLLSNTVYA SDA TQFSKAA KGIVAFTFD+QA +R+ +Q  G + +S G+I+EV EGLTGLLQSP++ AE+HGLPG+ SGIALG+TGLV +PAAS+LE+TGKTAQSIRNRSRLYQM  QR RVRLPRPLS  LPLRPYSWEEA+G SVL EA  DD KL DEV V  KALK  GK+V++T+ L+L+V+C SLVDLGKPEFRG+AA+ +WVIE+ I L +VIH D   D   VHIVGSSSD L R N+ + ++  G  ++ +RW  P TPLP+F+T LELE +ED +N L+ LLS IE  K+ G
Sbjct:    1 MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKFVVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVGSSSDLLSRPNKSLQKRVIGRSSRAVRWTGP-TPLPIFETILELELKEDAENLLKTLLSAIELAKDWG 342
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022R1Q0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0233772mg PE=4 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 8.170e-143
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P  S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q    ++RQ KG +SHSKG+INE  EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG +  RVRLPRPLS E PL+PYSWEEA+G  VL EA D KL++E  +M K LK  G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI +  VI  D D  VVHIVGS SD   RQ+ Q    G     K+R +N   PLPL QTNLE  S E+   FLRVL   IE GKEQG GS Y+L 
Sbjct:  363 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 716
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 4.131e-142
Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K Q  S
Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3099
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 5.086e-142
Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K Q  S
Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3070
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022PP19_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0005352mg PE=4 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 5.652e-142
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P  S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q    ++RQ KG +SHSKG+INE  EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG +  RVRLPRPLS E PL+PYSWEEA+G  VL EA D KL++E  +M K LK  G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI +  VI  D D  VVHIVGS SD   RQ+ Q    G     K+R +N   PLPL QTNLE  S E+   FLRVL   IE GKEQG GS Y+L 
Sbjct:  412 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 765
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 2.805e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3065
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0B2PLF6_GLYSO (Putative vacuolar protein sorting-associated protein 13A OS=Glycine soja GN=glysoja_026860 PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 2.955e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2520 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 2869
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25
Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712
             Y + GS   +GNP+G  R+ G G+ DF   PA+ ++KSP     G+A+GT+S + N+V+   +  ++ +     G+   +FDE+ +   ER+L          +G A    G+   + +G+TG++  PV+ A+K G  G   G+A GV G+  +P  +++++  KT + I+N + L    SQ  RVR PR  S +  LRP+   E+ G  +LK A  GK   + Y+    +      +I   R++L
Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23
Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2 
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733
            +K+FGS   IGNP+  A SLG G +DF   PA  ++KSP     G+++GT+SL++N+V+  +D+ ++ +    KG+V  + D+  +   ERQ +      KG+              V +G+TG++  P K A ++    G   GI  GV G+  +P   + ++  KT++ I+N + + +  SQ  R R+PR   RE  L  Y+  +++G  +L          + YV    L      +I +   +L++ C +L
Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21
Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655
            +YKV GS+  IGNP+G    +G G++DF   PA  ++ SP     G+A+G+ SL+ N+VY L +  ++ S    KG+   +FD+Q +   +R  + +A H  +G++         V +G+TG++  P++ A K  + G   G+A GV G+  +P   + ++   T + IRN + L++    M   RC          +  L  Y++E++ G  +L+    G+ K+ + Y++
Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16
Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682
            ++K+ GSA   GNP+G   ++  G+ D    P +  + +  P  +   +A+G  S    TV+ LSD+ ++F+ +  KG+ V    + Q V R+++++        A+ ++   + +  GL+G+   P K  +K G  G L G+  G+ GL  + A   L++T   +Q +++ + +  M  + CRVRLPR +  +  ++PY   EA G   LK  + G   ++ Y+    L  PGK
Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16
Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502
            +YK+ G+  + GNP+G   + G+G ++F     K ++ +         QG+ SL  ++VY + D+  + + +A K +   + D++ +  +ERQ + GE+ ++  +G+I         V+ G +G ++ P +  ++ G  G++ GI  G  GLV +P A+  +   K ++ I+N ++L
Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14
Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748
            ++ + GS+ + G+P+ F  ++  G+ + +  P                 G+  L+   +YA ++++++       G   ++ DE  + R + + K +A H        SKG    + +G+ G+++ PV+ A + GL G   G   GV G+  +P   + +   KT++ IRN + ++    +R R+R PR ++   P++ YS +E+ G  +LK+  D   K E   +S  ++   K+ ++     L++   SL+ L K
Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct:  382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13
Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2 
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718
            MY +     V+GNP G  R L  G+      P +  ++ P     G+  G  SL  +TV   +   ++ + +  KG+ A T D++   +   +L  +        A   KG +  V  G+TG++  PV+ A+K G  G   GI  G+ G V RP   I+++   T Q I+   R  +   +   +R PR +  +  +RPY  +E+ G S L E    KL+ E Y    A+    K ++M T R VL +
Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9RXC4_RICCO9.860e-15674.24Vacuolar protein sorting-associated protein, putat... [more]
U5GUT8_POPTR1.400e-15576.45Uncharacterized protein OS=Populus trichocarpa GN=... [more]
F6I5I0_VITVI9.474e-14773.13Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LY06_CUCSA1.138e-14367.06Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A022R1Q0_ERYGU8.170e-14365.28Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
K7M0B3_SOYBN4.131e-14269.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7M0B8_SOYBN5.086e-14269.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A022PP19_ERYGU5.652e-14265.28Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
K7M0B5_SOYBN2.805e-14169.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PLF6_GLYSO2.955e-14169.43Putative vacuolar protein sorting-associated prote... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VP13A_DICDI1.426e-2530.77Putative vacuolar protein sorting-associated prote... [more]
VP13C_DICDI5.078e-2329.02Putative vacuolar protein sorting-associated prote... [more]
VP13D_DICDI1.168e-2129.00Putative vacuolar protein sorting-associated prote... [more]
VPS13_YEAST7.030e-1628.09Vacuolar protein sorting-associated protein 13 OS=... [more]
VP13E_DICDI7.409e-1625.99Putative vacuolar protein sorting-associated prote... [more]
VP13B_DICDI2.429e-1423.74Putative vacuolar protein sorting-associated prote... [more]
VP13A_MACFA2.845e-1429.67Vacuolar protein sorting-associated protein 13A (F... [more]
VP13A_MOUSE4.299e-1429.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13A_HUMAN1.244e-1329.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13C_HUMAN5.787e-1328.63Vacuolar protein sorting-associated protein 13C OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1..85
e-value: 2.0E-25
score: 89.4
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..363
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..363

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bp
GATGTACAAGGTGTTTGGCTCTGCTGGTGTTATTGGCAATCCCATGGGAT
TTGCTAGGAGTCTAGGTGTAGGAATTAGAGATTTCTTAGCAGTTCCTGCA
AAGAGTATTTTGAAGAGTCCCACTGGACTTATCACAGGCATGGCTCAAGG
TACTACTAGTCTTCTGAGCAATACGGTCTATGCACTAAGTGATGCTGCCA
CTCAGTTCAGTAAAGCTGCACACAAGGGTATTGTTGCATTTACATTTGAT
GAGCAGGCTGTTGCAAGAATGGAAAGGCAATTGAAAGGGGAGGCTTCACA
CAGTAAAGGCATAATTAATGAAGTTTTTGAGGGACTTACTGGCCTCCTTC
AATCGCCAGTTAAAGAAGCAGAGAAACATGGCCTACCTGGAATCCTCTCA
GGAATAGCTTTGGGAGTAACAGGACTAGTGGGAAGACCAGCTGCTAGTAT
ACTTGAGGTTACTGGAAAAACTGCACAGAGTATTAGAAACAGAAGCAGAT
TATACCAAATGGGTTCGCAACGTTGTAGAGTTCGTTTGCCAAGGCCTTTA
AGCAGAGAACTTCCTTTGAGGCCTTACTCTTGGGAAGAAGCTGTTGGAAT
ATCGGTGCTTAAGGAAGCTGATGATGGCAAGCTCAAGGATGAAGTCTATG
TCATGTCCAAGGCACTTAAAAACCCCGGTAAATATGTCATCATGACAGAG
AGACTTGTGTTGGTTGTTAATTGCCCGAGTCTGGTGGACTTGGGGAAACC
TGAATTCCGAGGTGTTGCAGCTAATCAAGAGTGGGTGATAGAAACAGAAA
TTAGCCTGCATAGTGTAATCCACACTGATGCTGATGATGGTGTGGTACAT
ATTGTTGGAAGCAGTTCAGATGCATTGTTAAGACAGAATCAGCAGATGTC
GAGGAAGGGTGGTGGCGGTGGGACGAAGATGCGGTGGAATAATCCATCAA
CTCCGCTTCCACTTTTTCAGACCAACTTGGAACTGGAATCAGAAGAAGAC
ACAAAGAACTTTTTACGGGTTTTGCTTTCTACAATTGAACAGGGGAAAGA
GCAAGGGGGAAGTGAATATCTATTGCAGAGAAGTAGTATCAGGTAGATTT
CCTTTATTAGTTCCTTTTCTGTAAGCCTTTTTCACCCCAGTAAGAACAGG
AGAATATATATAATTAAAAACAAAGGTCCCTAACATATAGTTCACAAAAA
AAGAAAGAAAGAGAGGAAATAGCTAGATAAGAGTTGAGCTGGAAAGCATT
TGGTTTTTACTCTTGCATTTATTCATTCTCGTGTATAGTTTGTACAAAAT
TATATTTTACAACAGTAGATATATACAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_DH-like
IPR026847VPS13