g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009878
Unique Nameg.arboreum_cottongen_reftransV1_0009878
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1329
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009878:9..1329 .
Chr12:138584717..138586549 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1)

HSP 1 Score: 501.516 bits (1290), Expect = 9.860e-156
Identity = 268/361 (74.24%), Postives = 312/361 (86.43%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVF SAGVIGNPMGFAR+LG+GIRDFL+VPA+SI++SPTG+ITGMAQGTTSLLSNTVYALSDAATQFSKAA KGIVAFTFD+Q+  RME+Q KG + HSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVTGLV RPAASILEVTGKTA+SIRNRS+LYQ+GSQ+ RVRLPRPL+RELPLRPYS EEAVG SVL E DD  KLKDEV++M K+LK  GK+V++TERL+++V+C SLVDLGKPEF+GV A+ EWV+E+EI L S+IH D  + VVHIVGSSSD LLRQN   S++GGG  TK  W++ ST LPLFQTNLEL S +D ++ L +LLS IE GK +G GS YLL 
Sbjct: 3105 MYKVFASAGVIGNPMGFARNLGLGIRDFLSVPARSIMQSPTGIITGMAQGTTSLLSNTVYALSDAATQFSKAARKGIVAFTFDDQS--RMEKQQKGVSLHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTGLVARPAASILEVTGKTAESIRNRSKLYQIGSQQYRVRLPRPLNRELPLRPYSLEEAVGTSVLMEVDDDLKLKDEVFMMCKSLKQAGKFVVITERLIMIVSCSSLVDLGKPEFQGVPADPEWVVESEIGLDSLIHADKVEEVVHIVGSSSDGLLRQNHHQSKRGGGTRTK-HWSSHSTRLPLFQTNLELASNKDAEDLLEMLLSIIELGKGRGWGSAYLLH 3462          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1)

HSP 1 Score: 499.975 bits (1286), Expect = 1.400e-155
Identity = 276/361 (76.45%), Postives = 306/361 (84.76%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGTTSL+SNTVYALSDAATQFSKAA KGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GV GLV RPAASILEVTGKTAQSIRNRSRLYQMG Q  RVRLPRPLSRELPLRPYS EEAVG SVL EADDG  LK+EV V+ K+LK  GK+V++TERLVL V+ P LVDLGKPEFRGV  + EW++E+EISL SVIH DA + VVHIVG+ SDALL+QNQ  S+KG    TK  WNN  T LPL  TNLEL S  D K  L++LLSTI QGKE+  GS Y+L 
Sbjct: 2340 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTTSLVSNTVYALSDAATQFSKAAQKGIVAFTFDDQSVARMEKQQKGAASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIAFGVAGLVARPAASILEVTGKTAQSIRNRSRLYQMGPQCYRVRLPRPLSRELPLRPYSLEEAVGTSVLMEADDGLYLKNEVLVICKSLKQAGKFVVVTERLVLTVSSPGLVDLGKPEFRGVPIDPEWLVESEISLDSVIHVDAVEEVVHIVGTRSDALLKQNQHQSKKGVLTRTK-SWNN-RTSLPLSLTNLELASMNDAKELLQILLSTIAQGKERRLGSGYVLH 2698          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: F6I5I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=1)

HSP 1 Score: 474.167 bits (1219), Expect = 9.474e-147
Identity = 264/361 (73.13%), Postives = 304/361 (84.21%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNP+GF RS+G+GI+DFL+ PA+S+L+SPTGLITGMAQGTTSLLS+TVYA+SDAATQFSKAAHKGIVAFTFD+QA   ME+Q K  ASHSKG+INE+ EGLTGLLQSP+K AEKHGLPG+LSG+ALG+TGLV RPAASILEVTGKTAQSIRNRSRLYQMG++R RVRLPRPLSRELPL PYSWEEAVG SVL +ADD  +LK+EV +  KALK  GK+ I+TERL+L+V+C SLV LGKPEF+GV A  EWVIE EI L SVIH D DD V+HIVGSSS+ +L Q  Q  RK  G  TK +WNNP TPLP FQT+LE   +ED +  L++LLS IEQGKE+G GS YLL 
Sbjct: 2133 MYKVFGSAGVIGNPVGFIRSVGLGIKDFLSAPARSVLQSPTGLITGMAQGTTSLLSSTVYAISDAATQFSKAAHKGIVAFTFDDQAAGIMEKQQKSVASHSKGVINELLEGLTGLLQSPIKGAEKHGLPGVLSGVALGLTGLVARPAASILEVTGKTAQSIRNRSRLYQMGARRLRVRLPRPLSRELPLMPYSWEEAVGASVLADADDELRLKEEVLITCKALKQDGKFFIITERLILIVSCSSLVGLGKPEFQGVPATPEWVIEAEIGLESVIHADTDDAVIHIVGSSSETMLGQTHQPQRKSTGMRTK-QWNNPPTPLPFFQTSLEFVCKEDAEELLQILLSAIEQGKERGWGSGYLLH 2492          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 1.138e-143
Identity = 230/343 (67.06%), Postives = 276/343 (80.47%), Query Frame = 2
Query:   44 MGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEA--DDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDA--DDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057
            MGFAR LG+GIRDFL+VPAK+IL+SPTGLITGM QGTTSLLSNTVYA SDA TQFSKAA KGIVAFTFD+QA +R+ +Q  G + +S G+I+EV EGLTGLLQSP++ AE+HGLPG+ SGIALG+TGLV +PAAS+LE+TGKTAQSIRNRSRLYQM  QR RVRLPRPLS  LPLRPYSWEEA+G SVL EA  DD KL DEV V  KALK  GK+V++T+ L+L+V+C SLVDLGKPEFRG+AA+ +WVIE+ I L +VIH D   D   VHIVGSSSD L R N+ + ++  G  ++ +RW  P TPLP+F+T LELE +ED +N L+ LLS IE  K+ G
Sbjct:    1 MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKFVVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVGSSSDLLSRPNKSLQKRVIGRSSRAVRWTGP-TPLPIFETILELELKEDAENLLKTLLSAIELAKDWG 342          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022R1Q0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0233772mg PE=4 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 8.170e-143
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P  S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q    ++RQ KG +SHSKG+INE  EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG +  RVRLPRPLS E PL+PYSWEEA+G  VL EA D KL++E  +M K LK  G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI +  VI  D D  VVHIVGS SD   RQ+ Q    G     K+R +N   PLPL QTNLE  S E+   FLRVL   IE GKEQG GS Y+L 
Sbjct:  363 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 716          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 4.131e-142
Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K Q  S
Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3099          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 5.086e-142
Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K Q  S
Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3070          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022PP19_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0005352mg PE=4 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 5.652e-142
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P  S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q    ++RQ KG +SHSKG+INE  EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG +  RVRLPRPLS E PL+PYSWEEA+G  VL EA D KL++E  +M K LK  G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI +  VI  D D  VVHIVGS SD   RQ+ Q    G     K+R +N   PLPL QTNLE  S E+   FLRVL   IE GKEQG GS Y+L 
Sbjct:  412 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 765          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 2.805e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3065          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0B2PLF6_GLYSO (Putative vacuolar protein sorting-associated protein 13A OS=Glycine soja GN=glysoja_026860 PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 2.955e-141
Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048
            YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+     AS SKG+INEV EGLTGLLQ PV  AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+  Q+  Q  RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE  V  KALK  GK+V++TER VLVV   SL++LGKPEFRG+  + EW+IE EI L ++IH D  +GVVHIVGS  D+LLRQNQ   + G GG T+ +RWN  +T LP  QTNLEL SEED  N L++LLS IE+ K
Sbjct: 2520 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 2869          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_MOUSE (Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 9.274e-13
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQLK----GEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIR 487
            MY +     V+GNP G  R L  G+      P +  ++ P     G+  G  SL+ +TV   +   ++ + +  KG+ A T D++   +    M RQ K      A   KG +  V  G+TG++  PV+ A+K G  G   GI  G+ G V RP   I+++   T Q I+
Sbjct: 3408 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQ 3577          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_SCHPO (Vacuolar protein sorting-associated protein 13b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13b PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.025e-12
Identity = 58/247 (23.48%), Postives = 116/247 (46.96%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKS-ILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQ---------AVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712
            +YK+ G A  +GNP+G   ++  G+ D    P +  +L+         A+GT+S +  T+Y +SD+ ++ +    KG+   T D +         +  R +  + G  + +    + +  G  GL + P  + + +     L G   G+ GL  +PA  +L++T   ++ IRN + + +   +  +VR+PR +     + P+   E++G  +L   DDGK   + Y+    ++N     I T+  ++
Sbjct: 2688 IYKIAGRADFLGNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSFGDSFARGTSSFMRKTIYGVSDSVSKITGTISKGLSTMTMDPKYQNSRRRFRSRNRPKEAVYGVTAGANSFYDSMSSGFKGL-KKPFTDPKNNSAGKFLKGFGKGMLGLATKPAIGLLDMTSNVSEGIRNSTDV-RTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFII 2932          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.983e-12
Identity = 50/210 (23.81%), Postives = 94/210 (44.76%), Query Frame = 2
Query:   11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586
            V GS  ++G+P    RS+G GI DF  +P + + + P   ++G+++GTTS + +       + T  + +  + +   + DE+   R E   RQL    GE    +G+      +   + G++  P++  +K         H   G++SG+  G+ G+  +P     E+  +T   I + + L Q+  QRC+               Y W+
Sbjct: 3642 VVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWK 3850          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_SCHPO (Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.366e-11
Identity = 58/263 (22.05%), Postives = 119/263 (45.25%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSIL--KSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ---------LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLY-QMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLV----VNCPSLVDL 742
            ++K+ GSA  +GNP+G   ++  G  D    P    +  +    L  G A+GT S +   V+ ++D+ ++ +    + +   T D +  +R             L G  + +  +   V  G+ GL   P+  A ++GLPG++ G+  G+ G   +P   + +     ++  RN + ++ +   ++ R+   R +S +  + P+   EA+G   LK  D+G+   + Y     ++N    ++   R++ V    +NC   + L
Sbjct: 2751 VHKIVGSADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGSYELGIGFAKGTASFIKKAVFGITDSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGLVGFTTKPLVGLFDFASSISEGARNTTTVFDERHIEKLRL--SRLMSDDGVVYPFQLREALGQYWLKHLDNGRYFKDFYKAHIIIENKVLVILTNNRILFVQPQQLNCKKEIHL 3011          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 3.861e-10
Identity = 48/210 (22.86%), Postives = 93/210 (44.29%), Query Frame = 2
Query:   11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586
            V GS  ++G+P    RS+G G+ DF  +P + + + P   ++G+++GTTS + +       + T  + +  + +   + DE+   R E   RQL    GE    +G+      +   + G++  P++  +K         H   G++SG+  G+ G+  +P     E+  +T   I + + L Q+  QR +               Y W+
Sbjct: 3650 VVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWK 3858          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9RXC4_RICCO9.860e-15674.24Vacuolar protein sorting-associated protein, putat... [more]
U5GUT8_POPTR1.400e-15576.45Uncharacterized protein OS=Populus trichocarpa GN=... [more]
F6I5I0_VITVI9.474e-14773.13Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LY06_CUCSA1.138e-14367.06Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A022R1Q0_ERYGU8.170e-14365.28Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
K7M0B3_SOYBN4.131e-14269.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7M0B8_SOYBN5.086e-14269.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A022PP19_ERYGU5.652e-14265.28Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
K7M0B5_SOYBN2.805e-14169.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PLF6_GLYSO2.955e-14169.43Putative vacuolar protein sorting-associated prote... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VP13C_MOUSE9.274e-1330.00Vacuolar protein sorting-associated protein 13C OS... [more]
VP13B_SCHPO7.025e-1223.48Vacuolar protein sorting-associated protein 13b OS... [more]
VP13B_MOUSE8.983e-1223.81Vacuolar protein sorting-associated protein 13B OS... [more]
VP13A_SCHPO2.366e-1122.05Vacuolar protein sorting-associated protein 13a OS... [more]
VP13B_HUMAN3.861e-1022.86Vacuolar protein sorting-associated protein 13B OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1..85
e-value: 2.0E-25
score: 89.4
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..363
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..363

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bp
GATGTACAAGGTGTTTGGCTCTGCTGGTGTTATTGGCAATCCCATGGGAT
TTGCTAGGAGTCTAGGTGTAGGAATTAGAGATTTCTTAGCAGTTCCTGCA
AAGAGTATTTTGAAGAGTCCCACTGGACTTATCACAGGCATGGCTCAAGG
TACTACTAGTCTTCTGAGCAATACGGTCTATGCACTAAGTGATGCTGCCA
CTCAGTTCAGTAAAGCTGCACACAAGGGTATTGTTGCATTTACATTTGAT
GAGCAGGCTGTTGCAAGAATGGAAAGGCAATTGAAAGGGGAGGCTTCACA
CAGTAAAGGCATAATTAATGAAGTTTTTGAGGGACTTACTGGCCTCCTTC
AATCGCCAGTTAAAGAAGCAGAGAAACATGGCCTACCTGGAATCCTCTCA
GGAATAGCTTTGGGAGTAACAGGACTAGTGGGAAGACCAGCTGCTAGTAT
ACTTGAGGTTACTGGAAAAACTGCACAGAGTATTAGAAACAGAAGCAGAT
TATACCAAATGGGTTCGCAACGTTGTAGAGTTCGTTTGCCAAGGCCTTTA
AGCAGAGAACTTCCTTTGAGGCCTTACTCTTGGGAAGAAGCTGTTGGAAT
ATCGGTGCTTAAGGAAGCTGATGATGGCAAGCTCAAGGATGAAGTCTATG
TCATGTCCAAGGCACTTAAAAACCCCGGTAAATATGTCATCATGACAGAG
AGACTTGTGTTGGTTGTTAATTGCCCGAGTCTGGTGGACTTGGGGAAACC
TGAATTCCGAGGTGTTGCAGCTAATCAAGAGTGGGTGATAGAAACAGAAA
TTAGCCTGCATAGTGTAATCCACACTGATGCTGATGATGGTGTGGTACAT
ATTGTTGGAAGCAGTTCAGATGCATTGTTAAGACAGAATCAGCAGATGTC
GAGGAAGGGTGGTGGCGGTGGGACGAAGATGCGGTGGAATAATCCATCAA
CTCCGCTTCCACTTTTTCAGACCAACTTGGAACTGGAATCAGAAGAAGAC
ACAAAGAACTTTTTACGGGTTTTGCTTTCTACAATTGAACAGGGGAAAGA
GCAAGGGGGAAGTGAATATCTATTGCAGAGAAGTAGTATCAGGTAGATTT
CCTTTATTAGTTCCTTTTCTGTAAGCCTTTTTCACCCCAGTAAGAACAGG
AGAATATATATAATTAAAAACAAAGGTCCCTAACATATAGTTCACAAAAA
AAGAAAGAAAGAGAGGAAATAGCTAGATAAGAGTTGAGCTGGAAAGCATT
TGGTTTTTACTCTTGCATTTATTCATTCTCGTGTATAGTTTGTACAAAAT
TATATTTTACAACAGTAGATATATACAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_DH-like
IPR026847VPS13