g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1) HSP 1 Score: 501.516 bits (1290), Expect = 9.860e-156 Identity = 268/361 (74.24%), Postives = 312/361 (86.43%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVF SAGVIGNPMGFAR+LG+GIRDFL+VPA+SI++SPTG+ITGMAQGTTSLLSNTVYALSDAATQFSKAA KGIVAFTFD+Q+ RME+Q KG + HSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVTGLV RPAASILEVTGKTA+SIRNRS+LYQ+GSQ+ RVRLPRPL+RELPLRPYS EEAVG SVL E DD KLKDEV++M K+LK GK+V++TERL+++V+C SLVDLGKPEF+GV A+ EWV+E+EI L S+IH D + VVHIVGSSSD LLRQN S++GGG TK W++ ST LPLFQTNLEL S +D ++ L +LLS IE GK +G GS YLL Sbjct: 3105 MYKVFASAGVIGNPMGFARNLGLGIRDFLSVPARSIMQSPTGIITGMAQGTTSLLSNTVYALSDAATQFSKAARKGIVAFTFDDQS--RMEKQQKGVSLHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTGLVARPAASILEVTGKTAESIRNRSKLYQIGSQQYRVRLPRPLNRELPLRPYSLEEAVGTSVLMEVDDDLKLKDEVFMMCKSLKQAGKFVVITERLIMIVSCSSLVDLGKPEFQGVPADPEWVVESEIGLDSLIHADKVEEVVHIVGSSSDGLLRQNHHQSKRGGGTRTK-HWSSHSTRLPLFQTNLELASNKDAEDLLEMLLSIIELGKGRGWGSAYLLH 3462
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1) HSP 1 Score: 499.975 bits (1286), Expect = 1.400e-155 Identity = 276/361 (76.45%), Postives = 306/361 (84.76%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGTTSL+SNTVYALSDAATQFSKAA KGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GV GLV RPAASILEVTGKTAQSIRNRSRLYQMG Q RVRLPRPLSRELPLRPYS EEAVG SVL EADDG LK+EV V+ K+LK GK+V++TERLVL V+ P LVDLGKPEFRGV + EW++E+EISL SVIH DA + VVHIVG+ SDALL+QNQ S+KG TK WNN T LPL TNLEL S D K L++LLSTI QGKE+ GS Y+L Sbjct: 2340 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTTSLVSNTVYALSDAATQFSKAAQKGIVAFTFDDQSVARMEKQQKGAASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIAFGVAGLVARPAASILEVTGKTAQSIRNRSRLYQMGPQCYRVRLPRPLSRELPLRPYSLEEAVGTSVLMEADDGLYLKNEVLVICKSLKQAGKFVVVTERLVLTVSSPGLVDLGKPEFRGVPIDPEWLVESEISLDSVIHVDAVEEVVHIVGTRSDALLKQNQHQSKKGVLTRTK-SWNN-RTSLPLSLTNLELASMNDAKELLQILLSTIAQGKERRLGSGYVLH 2698
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: F6I5I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=1) HSP 1 Score: 474.167 bits (1219), Expect = 9.474e-147 Identity = 264/361 (73.13%), Postives = 304/361 (84.21%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNP+GF RS+G+GI+DFL+ PA+S+L+SPTGLITGMAQGTTSLLS+TVYA+SDAATQFSKAAHKGIVAFTFD+QA ME+Q K ASHSKG+INE+ EGLTGLLQSP+K AEKHGLPG+LSG+ALG+TGLV RPAASILEVTGKTAQSIRNRSRLYQMG++R RVRLPRPLSRELPL PYSWEEAVG SVL +ADD +LK+EV + KALK GK+ I+TERL+L+V+C SLV LGKPEF+GV A EWVIE EI L SVIH D DD V+HIVGSSS+ +L Q Q RK G TK +WNNP TPLP FQT+LE +ED + L++LLS IEQGKE+G GS YLL Sbjct: 2133 MYKVFGSAGVIGNPVGFIRSVGLGIKDFLSAPARSVLQSPTGLITGMAQGTTSLLSSTVYAISDAATQFSKAAHKGIVAFTFDDQAAGIMEKQQKSVASHSKGVINELLEGLTGLLQSPIKGAEKHGLPGVLSGVALGLTGLVARPAASILEVTGKTAQSIRNRSRLYQMGARRLRVRLPRPLSRELPLMPYSWEEAVGASVLADADDELRLKEEVLITCKALKQDGKFFIITERLILIVSCSSLVGLGKPEFQGVPATPEWVIEAEIGLESVIHADTDDAVIHIVGSSSETMLGQTHQPQRKSTGMRTK-QWNNPPTPLPFFQTSLEFVCKEDAEELLQILLSAIEQGKERGWGSGYLLH 2492
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1) HSP 1 Score: 426.787 bits (1096), Expect = 1.138e-143 Identity = 230/343 (67.06%), Postives = 276/343 (80.47%), Query Frame = 2 Query: 44 MGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEA--DDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDA--DDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG 1057 MGFAR LG+GIRDFL+VPAK+IL+SPTGLITGM QGTTSLLSNTVYA SDA TQFSKAA KGIVAFTFD+QA +R+ +Q G + +S G+I+EV EGLTGLLQSP++ AE+HGLPG+ SGIALG+TGLV +PAAS+LE+TGKTAQSIRNRSRLYQM QR RVRLPRPLS LPLRPYSWEEA+G SVL EA DD KL DEV V KALK GK+V++T+ L+L+V+C SLVDLGKPEFRG+AA+ +WVIE+ I L +VIH D D VHIVGSSSD L R N+ + ++ G ++ +RW P TPLP+F+T LELE +ED +N L+ LLS IE K+ G Sbjct: 1 MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKFVVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVGSSSDLLSRPNKSLQKRVIGRSSRAVRWTGP-TPLPIFETILELELKEDAENLLKTLLSAIELAKDWG 342
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022R1Q0_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0233772mg PE=4 SV=1) HSP 1 Score: 437.573 bits (1124), Expect = 8.170e-143 Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q ++RQ KG +SHSKG+INE EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG + RVRLPRPLS E PL+PYSWEEA+G VL EA D KL++E +M K LK G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI + VI D D VVHIVGS SD RQ+ Q G K+R +N PLPL QTNLE S E+ FLRVL IE GKEQG GS Y+L Sbjct: 363 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 716
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 462.225 bits (1188), Expect = 4.131e-142 Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Q S Sbjct: 2745 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3099
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 5.086e-142 Identity = 245/355 (69.01%), Postives = 286/355 (80.56%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Q S Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEKVQCKS 3070
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A022PP19_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0005352mg PE=4 SV=1) HSP 1 Score: 436.802 bits (1122), Expect = 5.652e-142 Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAG+IGNP+GFARSLG+GI+DF ++P S+ +SP GL+TGMAQGT SLLSNTVYA+SDA +QFSKAAHKGIVAFTFD+Q ++RQ KG +SHSKG+INE EGLTG+LQSP+K AEKHGLPG+LSGIA+GVTGLV +PAASILEVTGKTAQSIRNRSR++QMG + RVRLPRPLS E PL+PYSWEEA+G VL EA D KL++E +M K LK G+YV++T RL+L+V C SLV+LGKP F GV ++ +WVIE+EI + VI D D VVHIVGS SD RQ+ Q G K+R +N PLPL QTNLE S E+ FLRVL IE GKEQG GS Y+L Sbjct: 412 MYKVFGSAGLIGNPVGFARSLGLGIKDFFSLPMWSVFQSPAGLMTGMAQGTMSLLSNTVYAVSDATSQFSKAAHKGIVAFTFDDQTAIMVDRQQKGMSSHSKGVINEFLEGLTGVLQSPIKGAEKHGLPGVLSGIAVGVTGLVAKPAASILEVTGKTAQSIRNRSRIHQMGYRCLRVRLPRPLSAESPLKPYSWEEAIGTFVLAEA-DMKLREETLIMCKPLKQCGQYVLITRRLILIVGCSSLVELGKPNFEGVPSDPKWVIESEIGMDGVILADNDGEVVHIVGSGSDTSFRQSLQ----GNEAKGKLR-HNFQAPLPLLQTNLEFNSSEEADEFLRVLRCMIELGKEQGWGSLYILH 765
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K7M0B5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 2.805e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2716 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 3065
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0B2PLF6_GLYSO (Putative vacuolar protein sorting-associated protein 13A OS=Glycine soja GN=glysoja_026860 PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 2.955e-141 Identity = 243/350 (69.43%), Postives = 284/350 (81.14%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTK-MRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGK 1048 YK+FGSAGVIGNP+GFARS+G+GIRDFL+VPAKSI++SPTGLI GMAQGTTSLLSNTVYA+SDAA+QFSKAA KGIVAFT+D+QAV+RME+ AS SKG+INEV EGLTGLLQ PV AE+HGLPG+LSG+ALG+TGLV +PAASILEVTGKTA SIRNRS+ Q+ Q RVRL RPL RE PL+PYSWEEAVG SVL EADDG K KDE V KALK GK+V++TER VLVV SL++LGKPEFRG+ + EW+IE EI L ++IH D +GVVHIVGS D+LLRQNQ + G GG T+ +RWN +T LP QTNLEL SEED N L++LLS IE+ K Sbjct: 2520 YKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKTALSIRNRSKPSQLRLQHFRVRLQRPLCREFPLKPYSWEEAVGTSVLVEADDGLKFKDEKLVACKALKEAGKFVVITERFVLVVFSASLINLGKPEFRGIPVDLEWIIEWEIGLENIIHADCSEGVVHIVGSRPDSLLRQNQHSPKGGSGGRTRSVRWNQFATHLPFPQTNLELASEEDAANLLQILLSAIEKEK 2869
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_MOUSE (Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 9.274e-13 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQLK----GEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIR 487 MY + V+GNP G R L G+ P + ++ P G+ G SL+ +TV + ++ + + KG+ A T D++ + M RQ K A KG + V G+TG++ PV+ A+K G G GI G+ G V RP I+++ T Q I+ Sbjct: 3408 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQ 3577
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_SCHPO (Vacuolar protein sorting-associated protein 13b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13b PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.025e-12 Identity = 58/247 (23.48%), Postives = 116/247 (46.96%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKS-ILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQ---------AVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712 +YK+ G A +GNP+G ++ G+ D P + +L+ A+GT+S + T+Y +SD+ ++ + KG+ T D + + R + + G + + + + G GL + P + + + L G G+ GL +PA +L++T ++ IRN + + + + +VR+PR + + P+ E++G +L DDGK + Y+ ++N I T+ ++ Sbjct: 2688 IYKIAGRADFLGNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSFGDSFARGTSSFMRKTIYGVSDSVSKITGTISKGLSTMTMDPKYQNSRRRFRSRNRPKEAVYGVTAGANSFYDSMSSGFKGL-KKPFTDPKNNSAGKFLKGFGKGMLGLATKPAIGLLDMTSNVSEGIRNSTDV-RTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFII 2932
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 8.983e-12 Identity = 50/210 (23.81%), Postives = 94/210 (44.76%), Query Frame = 2 Query: 11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586 V GS ++G+P RS+G GI DF +P + + + P ++G+++GTTS + + + T + + + + + DE+ R E RQL GE +G+ + + G++ P++ +K H G++SG+ G+ G+ +P E+ +T I + + L Q+ QRC+ Y W+ Sbjct: 3642 VVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWK 3850
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_SCHPO (Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.366e-11 Identity = 58/263 (22.05%), Postives = 119/263 (45.25%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSIL--KSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ---------LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLY-QMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLV----VNCPSLVDL 742 ++K+ GSA +GNP+G ++ G D P + + L G A+GT S + V+ ++D+ ++ + + + T D + +R L G + + + V G+ GL P+ A ++GLPG++ G+ G+ G +P + + ++ RN + ++ + ++ R+ R +S + + P+ EA+G LK D+G+ + Y ++N ++ R++ V +NC + L Sbjct: 2751 VHKIVGSADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGSYELGIGFAKGTASFIKKAVFGITDSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGLVGFTTKPLVGLFDFASSISEGARNTTTVFDERHIEKLRL--SRLMSDDGVVYPFQLREALGQYWLKHLDNGRYFKDFYKAHIIIENKVLVILTNNRILFVQPQQLNCKKEIHL 3011
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 3.861e-10 Identity = 48/210 (22.86%), Postives = 93/210 (44.29%), Query Frame = 2 Query: 11 VFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARME---RQLK---GEASHSKGIIN---EVFEGLTGLLQSPVKEAEK---------HGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWE 586 V GS ++G+P RS+G G+ DF +P + + + P ++G+++GTTS + + + T + + + + + DE+ R E RQL GE +G+ + + G++ P++ +K H G++SG+ G+ G+ +P E+ +T I + + L Q+ QR + Y W+ Sbjct: 3650 VVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLR-QGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWK 3858 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bpback to top |