g.arboreum_cottongen_reftransV1_0002376, g.arboreum_cottongen_reftransV1_0002376 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002376
Unique Nameg.arboreum_cottongen_reftransV1_0002376
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeg.arboreum_cottongen_reftransV1_0002376:1..327 .
Chr13:90463176..90463502 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A059BLR7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00807 PE=4 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.294e-63
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STG+QYACK+ISKRKLV KNDKEDM+REI IMQHLSGQPNIVEFKGAYED+ +VHLVMELCAGGELFDRIIAKGHYSERAAA+ICRAIVNVVHACHFMGVMHRDLK
Sbjct:  114 EISTGRQYACKSISKRKLVSKNDKEDMRREIHIMQHLSGQPNIVEFKGAYEDRHAVHLVMELCAGGELFDRIIAKGHYSERAAATICRAIVNVVHACHFMGVMHRDLK 221
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: W9QQG6_9ROSA (Calcium-dependent protein kinase 9 OS=Morus notabilis GN=L484_017849 PE=4 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.321e-63
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG+ YACK+ISKRKLV KNDKEDMKREI+IMQHLSGQPNIVEFKGAYEDKQSV+LVMELCAGGELFDRIIAKGHYSERAAASICRAIV VVH CHFMGVMHRDLK
Sbjct:  120 ENSTGRLYACKSISKRKLVSKNDKEDMKREIRIMQHLSGQPNIVEFKGAYEDKQSVNLVMELCAGGELFDRIIAKGHYSERAAASICRAIVKVVHNCHFMGVMHRDLK 227
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: F6HEK1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00410 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.605e-63
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG QYACK+ISKRKLV KNDKED++REIQIMQ LSGQPNIVEFKGAYED+ SVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVH CHFMGVMHRDLK
Sbjct:  107 ENSTGLQYACKSISKRKLVTKNDKEDIRREIQIMQDLSGQPNIVEFKGAYEDRLSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHICHFMGVMHRDLK 214
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: I1N0P1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 6.389e-63
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG QYACK+ISKRKLV+K+DKED+KREIQIMQHLSGQPNIVEFKGAYED+ SVH+VMELCAGGELFDRIIAKGHYSERAAASICR IVNVVH CHFMGVMHRDLK
Sbjct:  116 ENSTGLQYACKSISKRKLVKKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLK 223
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A0B2P0E9_GLYSO (Calcium-dependent protein kinase 9 OS=Glycine soja GN=glysoja_009702 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.664e-63
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG QYACK+ISKRKLV+K+DKED+KREIQIMQHLSGQPNIVEFKGAYED+ SVH+VMELCAGGELFDRIIAKGHYSERAAASICR IVNVVH CHFMGVMHRDLK
Sbjct:  116 ENSTGLQYACKSISKRKLVKKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRSSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLK 223
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPK5_SOLTU (Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.426e-44
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E S+G  YACK+I+KRKL+ K D ED++REIQIM HL+G  NIV  KGAYED   VH+VMELC GGELFDRII +GHY+ER AA + + IV VV ACH +GVMHRDLK
Sbjct:   91 ELSSGIDYACKSIAKRKLISKEDVEDVRREIQIMHHLAGHKNIVSIKGAYEDPLYVHIVMELCGGGELFDRIIQRGHYTERKAADLTKIIVGVVEACHSLGVMHRDLK 198
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKP_ARATH (Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana GN=CPK25 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.703e-44
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E  TG++YACK+I KRKL  + D ED++REI+IM+HL GQPN++  KGAYED  +VH+VMELC GGELFDRI+ +GHYSER AA + + I+ VV  CH +GVMHRDLK
Sbjct:  151 EKGTGEEYACKSIPKRKLENEEDVEDVRREIEIMKHLLGQPNVISIKGAYEDSVAVHMVMELCRGGELFDRIVERGHYSERKAAHLAKVILGVVQTCHSLGVMHRDLK 258
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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKB_ORYSJ (Calcium-dependent protein kinase isoform 11 OS=Oryza sativa subsp. japonica GN=CPK11 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.140e-43
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E +TG +YACKTI KRKL+ K D ED++REIQIM HLSG  N+V  K  YED Q+VH+VMELCAGGELFDRI  KGHYSER AA + R IV++V  CH +GVMHRDLK
Sbjct:   98 EINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELCAGGELFDRIQEKGHYSERKAAELIRIIVSIVAMCHSLGVMHRDLK 205
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKB_ARATH (Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.765e-42
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E ST   YACK+I KRKLV + D ED+ REIQIM HLS  PN+V  KG YED   VH+VME+C GGELFDRI++KGH+SER A  + + I+ VV ACH +GVMHRDLK
Sbjct:   45 EKSTSANYACKSIPKRKLVCREDYEDVWREIQIMHHLSEHPNVVRIKGTYEDSVFVHIVMEVCEGGELFDRIVSKGHFSEREAVKLIKTILGVVEACHSLGVMHRDLK 152
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKR_ARATH (Calcium-dependent protein kinase 27 OS=Arabidopsis thaliana GN=CPK27 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 6.198e-42
Identity = 73/112 (65.18%), Postives = 87/112 (77.68%), Query Frame = -2 
Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIA----KGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STGK +ACKTI K KL  +  +ED+KREI+IM+ LSG+PNIVEFK AYEDK SVH+VME C GGEL+D+I+A       YSE+ AA I R+IVNVV  CH+MGVMHRDLK
Sbjct:   47 EKSTGKTFACKTILKTKLKDEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEYCGGGELYDKILALYDVGKSYSEKEAAGIIRSIVNVVKNCHYMGVMHRDLK 158
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059BLR7_EUCGR3.294e-6390.74Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
W9QQG6_9ROSA3.321e-6392.59Calcium-dependent protein kinase 9 OS=Morus notabi... [more]
F6HEK1_VITVI3.605e-6391.67Putative uncharacterized protein OS=Vitis vinifera... [more]
I1N0P1_SOYBN6.389e-6390.74Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2P0E9_GLYSO6.664e-6390.74Calcium-dependent protein kinase 9 OS=Glycine soja... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CDPK5_SOLTU8.426e-4466.67Calcium-dependent protein kinase 5 OS=Solanum tube... [more]
CDPKP_ARATH8.703e-4462.96Calcium-dependent protein kinase 25 OS=Arabidopsis... [more]
CDPKB_ORYSJ2.140e-4367.59Calcium-dependent protein kinase isoform 11 OS=Ory... [more]
CDPKB_ARATH1.765e-4262.96Calcium-dependent protein kinase 11 OS=Arabidopsis... [more]
CDPKR_ARATH6.198e-4265.18Calcium-dependent protein kinase 27 OS=Arabidopsis... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase domainPFAMPF00069Pkinasecoord: 2..82
e-value: 1.0E-21
score: 77.4
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 1..82
score: 17.517
NoneNo IPR availableGENE3D3.30.200.20coord: 2..82
e-value: 2.6E-26
score: 91.8
NoneNo IPR availablePANTHERPTHR24349:SF89CALCIUM-DEPENDENT PROTEIN KINASE 29coord: 1..82
NoneNo IPR availablePANTHERPTHR24349SERINE/THREONINE-PROTEIN KINASEcoord: 1..82
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 2..82

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002376 ID=g.arboreum_cottongen_reftransV1_0002376; Name=g.arboreum_cottongen_reftransV1_0002376; organism=Gossypium arboreum; type=contig; length=327bp
GGCTTAAGGTCCCTATGCATCACACCCATAAAATGGCAAGCATGGACAAC
ATTAACAATAGCCCTACATATAGAAGCCGCTGCCCTTTCACTATAGTGCC
CCTTAGCAATAATCCTATCAAACAATTCACCACCAGCACATAATTCCATC
ACAAGGTGAACAGATTGCTTATCCTCATAAGCACCCTTAAACTCAACAAT
ATTCGGTTGTCCACTCAAATGTTGCATAATTTGTATCTCCCTTTTCATAT
CTTCCTTATCATTCTTTCTCACTAGCTTCCTCTTGGATATAGTCTTGCAA
GCATATTGTTTACCAGTTGAATTCTCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation