g.arboreum_cottongen_reftransV1_0002376, g.arboreum_cottongen_reftransV1_0002376 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002376
Unique Name	g.arboreum_cottongen_reftransV1_0002376
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	327

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr13	chromosome	g.arboreum_cottongen_reftransV1_0002376:1..327 . Chr13:90463176..90463502 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A059BLW1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F007611 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.391e-66
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STG+QYACK+ISKRKLV KNDKEDMKREI IMQHLSGQPNIVEFKGAYEDKQ+VHLVMELCAGGELFDRIIAKGHY+ERAAA+ICRAIVNVVHACHFMGVMHRDLK
Sbjct:  114 EISTGRQYACKSISKRKLVTKNDKEDMKREIHIMQHLSGQPNIVEFKGAYEDKQAVHLVMELCAGGELFDRIIAKGHYTERAAATICRAIVNVVHACHFMGVMHRDLK 221

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A0B0PUJ9_GOSAR (Calcium-dependent protein kinase 9 OS=Gossypium arboreum GN=F383_13191 PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.320e-66
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTGKQYACKTISK+KLV +NDKEDM+REIQIMQHLSGQPNIVEFKGAYEDK SVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK
Sbjct:  109 ENSTGKQYACKTISKKKLVTRNDKEDMRREIQIMQHLSGQPNIVEFKGAYEDKLSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 216

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A0B0PQ56_GOSAR (Calcium-dependent protein kinase 9 OS=Gossypium arboreum GN=F383_08750 PE=4 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 5.605e-66
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTGKQYACKTISKRKL+ KNDKEDM+REIQ+MQHLSGQPNIVEFKGAYEDK SVHLVMELCAGGELFDRIIAKGHYSERAAAS+CRAIVNVVHACHFMGVMHRDLK
Sbjct:   96 ENSTGKQYACKTISKRKLITKNDKEDMRREIQLMQHLSGQPNIVEFKGAYEDKLSVHLVMELCAGGELFDRIIAKGHYSERAAASMCRAIVNVVHACHFMGVMHRDLK 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: V4UMU8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007983mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.715e-65
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG+Q+ACK+ISKRKLV KNDK+D+KREIQIMQHLSGQPNIVEFKGAYEDKQSVH+VMELCAGGELFDRIIAKGHYSERAAASICR+IVNVVH CHFMGVMHRDLK
Sbjct:  100 ENSTGRQFACKSISKRKLVTKNDKDDIKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRSIVNVVHICHFMGVMHRDLK 207

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A067KSL3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00889 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.906e-65
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG++YACK+ISKRKLV KNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSE+ AA+ICRAIVNVVHACHFMGVMHRDLK
Sbjct:  106 ENSTGRRYACKSISKRKLVTKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSEKEAAAICRAIVNVVHACHFMGVMHRDLK 213

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: V4UST7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007983mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.053e-65
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG+Q+ACK+ISKRKLV KNDK+D+KREIQIMQHLSGQPNIVEFKGAYEDKQSVH+VMELCAGGELFDRIIAKGHYSERAAASICR+IVNVVH CHFMGVMHRDLK
Sbjct:  100 ENSTGRQFACKSISKRKLVTKNDKDDIKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRSIVNVVHICHFMGVMHRDLK 207

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A0D2U4A8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438300 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.061e-64
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTGKQYACKTISKRKL+ KNDKEDM+REIQIMQHLSGQPNIVEFKGAYEDK SVHLVMELCAGGELFDRIIAKGHYSERAAAS+ RAIVNVVHACHFMGVMHRDLK
Sbjct:   96 ENSTGKQYACKTISKRKLITKNDKEDMRREIQIMQHLSGQPNIVEFKGAYEDKLSVHLVMELCAGGELFDRIIAKGHYSERAAASMGRAIVNVVHACHFMGVMHRDLK 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: B9T2U0_RICCO (Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0082230 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.416e-64
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STGK YACK+ISKRKLV +NDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSE+ AASICR+IVNVVHACHFMGVMHRDLK
Sbjct:  104 EISTGKLYACKSISKRKLVTRNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSEKEAASICRSIVNVVHACHFMGVMHRDLK 211

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: A0A059BLZ4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00807 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.303e-63
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STG+QYACK+ISKRKLV KNDKEDM+REI IMQHLSGQPNIVEFKGAYED+ +VHLVMELCAGGELFDRIIAKGHYSERAAA+ICRAIVNVVHACHFMGVMHRDLK
Sbjct:  114 EISTGRQYACKSISKRKLVSKNDKEDMRREIHIMQHLSGQPNIVEFKGAYEDRHAVHLVMELCAGGELFDRIIAKGHYSERAAATICRAIVNVVHACHFMGVMHRDLK 221

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Match: V7BPG4_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_006G0437000g PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.025e-63
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            ENSTG QYACK+ISKRKLV K+DKED+KREIQIMQHLSGQPNIVEFKGAYED+QSVH+VMELCAGGELFDRIIAKGHYSERAAASICR IVNVV+ CHFMGVMHRDLK
Sbjct:   25 ENSTGMQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVNICHFMGVMHRDLK 132

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPK5_SOLTU (Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.426e-44
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E S+G  YACK+I+KRKL+ K D ED++REIQIM HL+G  NIV  KGAYED   VH+VMELC GGELFDRII +GHY+ER AA + + IV VV ACH +GVMHRDLK
Sbjct:   91 ELSSGIDYACKSIAKRKLISKEDVEDVRREIQIMHHLAGHKNIVSIKGAYEDPLYVHIVMELCGGGELFDRIIQRGHYTERKAADLTKIIVGVVEACHSLGVMHRDLK 198

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKP_ARATH (Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana GN=CPK25 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.703e-44
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E  TG++YACK+I KRKL  + D ED++REI+IM+HL GQPN++  KGAYED  +VH+VMELC GGELFDRI+ +GHYSER AA + + I+ VV  CH +GVMHRDLK
Sbjct:  151 EKGTGEEYACKSIPKRKLENEEDVEDVRREIEIMKHLLGQPNVISIKGAYEDSVAVHMVMELCRGGELFDRIVERGHYSERKAAHLAKVILGVVQTCHSLGVMHRDLK 258

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKB_ORYSJ (Calcium-dependent protein kinase isoform 11 OS=Oryza sativa subsp. japonica GN=CPK11 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.140e-43
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E +TG +YACKTI KRKL+ K D ED++REIQIM HLSG  N+V  K  YED Q+VH+VMELCAGGELFDRI  KGHYSER AA + R IV++V  CH +GVMHRDLK
Sbjct:   98 EINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELCAGGELFDRIQEKGHYSERKAAELIRIIVSIVAMCHSLGVMHRDLK 205

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKB_ARATH (Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.765e-42
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E ST   YACK+I KRKLV + D ED+ REIQIM HLS  PN+V  KG YED   VH+VME+C GGELFDRI++KGH+SER A  + + I+ VV ACH +GVMHRDLK
Sbjct:   45 EKSTSANYACKSIPKRKLVCREDYEDVWREIQIMHHLSEHPNVVRIKGTYEDSVFVHIVMEVCEGGELFDRIVSKGHFSEREAVKLIKTILGVVEACHSLGVMHRDLK 152

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Match: CDPKR_ARATH (Calcium-dependent protein kinase 27 OS=Arabidopsis thaliana GN=CPK27 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 6.198e-42
Identity = 73/112 (65.18%), Postives = 87/112 (77.68%), Query Frame = -2

Query:    3 ENSTGKQYACKTISKRKLVRKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIA----KGHYSERAAASICRAIVNVVHACHFMGVMHRDLK 326
            E STGK +ACKTI K KL  +  +ED+KREI+IM+ LSG+PNIVEFK AYEDK SVH+VME C GGEL+D+I+A       YSE+ AA I R+IVNVV  CH+MGVMHRDLK
Sbjct:   47 EKSTGKTFACKTILKTKLKDEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEYCGGGELYDKILALYDVGKSYSEKEAAGIIRSIVNVVKNCHYMGVMHRDLK 158

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A059BLW1_EUCGR	1.391e-66	92.59	Uncharacterized protein (Fragment) OS=Eucalyptus g...	[more]
A0A0B0PUJ9_GOSAR	2.320e-66	95.37	Calcium-dependent protein kinase 9 OS=Gossypium ar...	[more]
A0A0B0PQ56_GOSAR	5.605e-66	94.44	Calcium-dependent protein kinase 9 OS=Gossypium ar...	[more]
V4UMU8_9ROSI	1.715e-65	91.67	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067KSL3_JATCU	1.906e-65	93.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
V4UST7_9ROSI	7.053e-65	91.67	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A0D2U4A8_GOSRA	1.061e-64	94.44	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9T2U0_RICCO	3.416e-64	92.59	Calcium-dependent protein kinase, putative OS=Rici...	[more]
A0A059BLZ4_EUCGR	2.303e-63	90.74	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
V7BPG4_PHAVU	3.025e-63	90.74	Uncharacterized protein (Fragment) OS=Phaseolus vu...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002376 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CDPK5_SOLTU	8.426e-44	66.67	Calcium-dependent protein kinase 5 OS=Solanum tube...	[more]
CDPKP_ARATH	8.703e-44	62.96	Calcium-dependent protein kinase 25 OS=Arabidopsis...	[more]
CDPKB_ORYSJ	2.140e-43	67.59	Calcium-dependent protein kinase isoform 11 OS=Ory...	[more]
CDPKB_ARATH	1.765e-42	62.96	Calcium-dependent protein kinase 11 OS=Arabidopsis...	[more]
CDPKR_ARATH	6.198e-42	65.18	Calcium-dependent protein kinase 27 OS=Arabidopsis...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 2..82 e-value: 1.0E-21 score: 77.4
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 1..82 score: 17.517
None	No IPR available	GENE3D	3.30.200.20		coord: 2..82 e-value: 2.6E-26 score: 91.8
None	No IPR available	PANTHER	PTHR24349:SF89	CALCIUM-DEPENDENT PROTEIN KINASE 29	coord: 1..82
None	No IPR available	PANTHER	PTHR24349	SERINE/THREONINE-PROTEIN KINASE	coord: 1..82
IPR011009	Protein kinase-like domain	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 2..82

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002376 ID=g.arboreum_cottongen_reftransV1_0002376; Name=g.arboreum_cottongen_reftransV1_0002376; organism=Gossypium arboreum; type=contig; length=327bp
GGCTTAAGGTCCCTATGCATCACACCCATAAAATGGCAAGCATGGACAAC
ATTAACAATAGCCCTACATATAGAAGCCGCTGCCCTTTCACTATAGTGCC
CCTTAGCAATAATCCTATCAAACAATTCACCACCAGCACATAATTCCATC
ACAAGGTGAACAGATTGCTTATCCTCATAAGCACCCTTAAACTCAACAAT
ATTCGGTTGTCCACTCAAATGTTGCATAATTTGTATCTCCCTTTTCATAT
CTTCCTTATCATTCTTTCTCACTAGCTTCCTCTTGGATATAGTCTTGCAA
GCATATTGTTTACCAGTTGAATTCTCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR011009	Kinase-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004672	protein kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

Search form

g.arboreum_cottongen_reftransV1_0002376, g.arboreum_cottongen_reftransV1_0002376 (contig) Gossypium arboreum

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