g.arboreum_cottongen_reftransV1_0017271, g.arboreum_cottongen_reftransV1_0017271 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017271
Unique Nameg.arboreum_cottongen_reftransV1_0017271
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length681
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0017271:1..681 .
Chr1:140594834..140595641 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: D7LM58_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484661 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.005e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  T A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASRGEEGTLAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: R0FRW7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10018759mg PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.127e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  T A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D3DBF2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.125e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  + A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASNGEEGSVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: B6SKR5_MAIZE (Zinc finger homeodomain protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.125e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  + A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASNGEEGSVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: M4E9A6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025362 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.125e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  + A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASNGEEGSVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ARATH (Mini zinc finger protein 2 OS=Arabidopsis thaliana GN=MIF2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.103e-19
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  T A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ARATH (Mini zinc finger protein 1 OS=Arabidopsis thaliana GN=MIF1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.848e-16
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y ECQKNHAA +GGYAVDGCREFMA+G EGT  AL CAACGCHRNFHR+EV+TEV C+ S P
Sbjct:   39 YVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPP 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF3_ARATH (Mini zinc finger protein 3 OS=Arabidopsis thaliana GN=MIF3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.439e-15
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFN 448
            Y ECQKNHAA +GGYAVDGCREFMAS   G   ALTCAACGCHRNFHRREV+TEV C+ S P   N
Sbjct:   26 YVECQKNHAANIGGYAVDGCREFMAS---GGDDALTCAACGCHRNFHRREVDTEVVCEYSPPNANN 88
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSJ (Mini zinc finger protein 1 OS=Oryza sativa subsp. japonica GN=MIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSI (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica GN=MIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSJ (Mini zinc finger protein 2 OS=Oryza sativa subsp. japonica GN=MIF2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSI (Mini zinc finger protein 2 OS=Oryza sativa subsp. indica GN=MIF2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD4_ARATH (Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHAA +GG A DGC EFM SGE+G+  ALTC+AC CHRNFHR+EVE E+A    SP
Sbjct:   90 YKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEGELAATAMSP 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSJ (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. japonica GN=ZHD2 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHA G+GG+AVDGC EFMASGEEG+  AL CAACGCHRNFHR+E E+      + P
Sbjct:   63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSI (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. indica GN=ZHD2 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHA G+GG+AVDGC EFMASGEEG+  AL CAACGCHRNFHR+E E+      + P
Sbjct:   63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7LM58_ARALL6.005e-1776.56Putative uncharacterized protein OS=Arabidopsis ly... [more]
R0FRW7_9BRAS6.127e-1776.56Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0D3DBF2_BRAOL7.125e-1775.00Uncharacterized protein OS=Brassica oleracea var. ... [more]
B6SKR5_MAIZE7.125e-1775.00Zinc finger homeodomain protein 1 OS=Zea mays PE=2... [more]
M4E9A6_BRARP7.125e-1775.00Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MIF2_ARATH7.103e-1976.56Mini zinc finger protein 2 OS=Arabidopsis thaliana... [more]
MIF1_ARATH3.848e-1677.42Mini zinc finger protein 1 OS=Arabidopsis thaliana... [more]
MIF3_ARATH1.439e-1574.24Mini zinc finger protein 3 OS=Arabidopsis thaliana... [more]
MIF1_ORYSJ7.774e-1479.03Mini zinc finger protein 1 OS=Oryza sativa subsp. ... [more]
MIF1_ORYSI7.774e-1479.03Mini zinc finger protein 1 OS=Oryza sativa subsp. ... [more]
MIF2_ORYSJ3.282e-1375.81Mini zinc finger protein 2 OS=Oryza sativa subsp. ... [more]
MIF2_ORYSI3.282e-1375.81Mini zinc finger protein 2 OS=Oryza sativa subsp. ... [more]
ZHD4_ARATH1.272e-966.13Zinc-finger homeodomain protein 4 OS=Arabidopsis t... [more]
ZHD2_ORYSJ6.000e-966.13Zinc-finger homeodomain protein 2 OS=Oryza sativa ... [more]
ZHD2_ORYSI6.000e-966.13Zinc-finger homeodomain protein 2 OS=Oryza sativa ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPFAMPF04770ZF-HD_dimercoord: 41..93
e-value: 1.2E-30
score: 105.4
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainTIGRFAMTIGR01566TIGR01566coord: 42..93
e-value: 1.0E-27
score: 94.3
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPRODOMPD125774coord: 43..105
e-value: 8.0E-17
score: 207.0
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPROSITEPS51523ZF_HD_DIMERcoord: 43..92
score: 26.346
NoneNo IPR availablePANTHERPTHR31948:SF12MINI ZINC FINGER PROTEIN 2coord: 11..105
NoneNo IPR availablePANTHERPTHR31948FAMILY NOT NAMEDcoord: 11..105

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017271 ID=g.arboreum_cottongen_reftransV1_0017271; Name=g.arboreum_cottongen_reftransV1_0017271; organism=Gossypium arboreum; type=contig; length=681bp
TTCACAACGACCAGTCTAGGGTTTACTATTGAGAAATTAAATAAGAACAA
ATCAGAAATACCCATTCTCAAGTAAGAAGCTATGCTATAAATATGTAATT
TAGGGTTAGGGCTATGGCCAATACATGAGACTAAAAGTACGATTTGGGAA
TCGATCGACGAAAATGAGGAAGCGACAAGTGGTACTGAGAAGGGAGGAGC
CACCAAGAAGCAGCAGCACCAATTCATCGTTGACAAGTAGAAGTGTGAGA
TATGCAGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGTTATGCTGT
TGATGGGTGCCGGGAATTCATGGCCAGCGGTGAAGAAGGAACAACTGCAG
CCCTTACTTGTGCTGCTTGCGGCTGCCATAGGAATTTCCATAGAAGGGAA
GTTGAAACTGAGGTAGCTTGTGACTGTTCATCACCTCCTCCTTTCAATGG
AGCATAATATATATGTAGCTTTATTAAATAAAATCACTTCTCATGTTTGT
ATAAATGGAAGGCTTTAATCATGTAATCTACCTATATATTTGCATTCTGC
TTATATATATATATGTTTCTTGAAAGAATGGGTTTCTTTCATAGCTTGTT
TTTCTATTATATTAAAAGATCAAAAGTATTTGTATTCATGTTTGGTTTTA
TGAAGAAATTAATGGGTGTTTTCTTCCATGA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006456ZF_HD_homeobox_Cys/His_dimer