g.arboreum_cottongen_reftransV1_0017271, g.arboreum_cottongen_reftransV1_0017271 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017271
Unique Nameg.arboreum_cottongen_reftransV1_0017271
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length681
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0017271:1..681 .
Chr1:140594834..140595641 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: W9QMA1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013609 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.325e-19
Identity = 79/98 (80.61%), Postives = 85/98 (86.73%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVE-TEVACDCSSPPPFNGA 454
            MRKRQVV+RR E P  SS NSS++ R+VRY ECQKNHAAGVGGYAVDGCREFMASGEEGT+ ALTCAACGCHRNFHRREVE TEV C+CSSP   NGA
Sbjct:    1 MRKRQVVVRRSEEPLRSSANSSMSVRNVRYGECQKNHAAGVGGYAVDGCREFMASGEEGTSGALTCAACGCHRNFHRREVETTEVVCECSSPSS-NGA 97
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A067GB00_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043591mg PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.173e-19
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            MRKRQVVLRREEP R+S+ +S        YAECQKNHAAGVGGYAVDGCREFMASGEEGT AALTCAACGCHR+FHRREV+TEV C+CSSP
Sbjct:    1 MRKRQVVLRREEPSRNSTASSVTVRSVR-YAECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRREVDTEVVCECSSP 90
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: B9H0F7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s12510g PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.761e-19
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            ++KMRKRQV +RR E P  SST S        Y EC KNHAA VGGYAVDGCREFMASGEEGT  ALTCAACGCHRNFHRREVETEV CDCSSP
Sbjct:   33 TSKMRKRQVAVRRTEEPSRSSTTSFTIRNVK-YGECLKNHAASVGGYAVDGCREFMASGEEGTADALTCAACGCHRNFHRREVETEVICDCSSP 125
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: V7C1P4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G033400g PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.766e-18
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMASG EGTTAALTCAACGCHRNFH+R+VETEV C+CSSPP
Sbjct:   22 YGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVCECSSPP 84
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A059A578_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02471 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.879e-18
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPP 439
            YAECQKNHAAG+GGYAVDGCREFMASGEEGT+ ALTCAACGCHRNFHRREVETEV C+ S PP
Sbjct:   29 YAECQKNHAAGIGGYAVDGCREFMASGEEGTSDALTCAACGCHRNFHRREVETEVVCEYSPPP 91
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: F6H5T5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00810 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.143e-18
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 2 
Query:  155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            S +MRKRQVVLRR+EP RSS+ +S        Y ECQKNHAAGVGGYAVDGCREFMASGEEGT++ALTCAACGCHRNFH REVETE+ C+CSSP
Sbjct:   32 SCRMRKRQVVLRRDEPSRSSANSSFTVRSVR-YGECQKNHAAGVGGYAVDGCREFMASGEEGTSSALTCAACGCHRNFHLREVETELVCECSSP 124
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A087GV61_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G057100 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.403e-18
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPPPFNG 451
            Y ECQKNHAA VGGYAVDGCREFMAS  E  T      AACGCHR+FHRRE++TEV CDC+SPPP  G
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASSGEEGTVVALTCAACGCHRSFHRREIQTEVVCDCNSPPPSAG 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: F6H5T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00760 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.482e-17
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAAG+GG+AVDGCREFMASG+EGT++ L CAACGCHRNFHRREVETEV C CSS P
Sbjct:   29 YGECQKNHAAGIGGHAVDGCREFMASGQEGTSSELICAACGCHRNFHRREVETEVLCPCSSAP 91
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: B9T6Z4_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_0107910 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.718e-17
Identity = 74/93 (79.57%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETE-VACDCSSP 436
            MRKRQVV+RREEP RSSST S+ T RSVRY ECQKNHAA VGGYAVDGCREFMAS  E  T A    AACGCHRNFHRREVETE V CDCSSP
Sbjct:    1 MRKRQVVVRREEPSRSSSTTSAFTVRSVRYGECQKNHAANVGGYAVDGCREFMASNGEEGTTAALTCAACGCHRNFHRREVETEQVVCDCSSP 93
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A068U165_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039563001 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.079e-17
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPF 445
            Y ECQKNHAAGVGGYAVDGCREFMASGEEGT AAL+CAACGCHRNFHRREVETE  C+ SSP   
Sbjct:   29 YGECQKNHAAGVGGYAVDGCREFMASGEEGTNAALSCAACGCHRNFHRREVETEAVCEGSSPSSL 93
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF4_ORYSJ (Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica GN=MIF4 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 1.621e-8
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSS 433
            Y EC++NHAA +GG+AVDGCREF+A GEEGT  AL CAACGCHR+FHRR V  +  C C +
Sbjct:   35 YGECRRNHAARMGGHAVDGCREFLAEGEEGTGGALRCAACGCHRSFHRRVVVVQQCCACDT 95
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD3_ARATH (Zinc-finger homeodomain protein 3 OS=Arabidopsis thaliana GN=ZHD3 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.764e-8
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSS------PPP 442
            Y EC KNHAA +GG A+DGC EFM SGEEG+  ALTC+ C CHRNFHRRE E E     S       PPP
Sbjct:   87 YKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRETEGEEKTFFSPYLNHHQPPP 156
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD1_ORYSI (Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica GN=ZHD1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.894e-8
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVET 409
            Y EC KNHA G+GG+AVDGC EFMA+GEEGT  AL CAAC CHRNFHR+E E+
Sbjct:   57 YRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESES 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD1_ORYSJ (Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica GN=ZHD1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.932e-8
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVET 409
            Y EC KNHA G+GG+AVDGC EFMA+GEEGT  AL CAAC CHRNFHR+E E+
Sbjct:   57 YRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESES 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ARATH (Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.051e-7
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVET 409
            Y EC KNHA  +GG+AVDGC EFM SGE+GT  AL CAACGCHRNFHR+E E+
Sbjct:   49 YRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES 101
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD8_ARATH (Zinc-finger homeodomain protein 8 OS=Arabidopsis thaliana GN=ZHD8 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.922e-7
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXX--XHRNFHRRE 400
            Y EC KNHAAG+GG+A+DGC EFM S    +    +       CHRNFHRRE
Sbjct:   56 YKECLKNHAAGIGGHALDGCGEFMPSPSFNSNDPASLTCAACGCHRNFHRRE 107
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD6_ARATH (Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana GN=ZHD6 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.733e-7
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVE 406
            Y ECQKNHAA  GG+ VDGC EFM+SGEEGT  +L CAAC CHR+FHR+E++
Sbjct:   82 YRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEID 133
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD7_ARATH (Zinc-finger homeodomain protein 7 OS=Arabidopsis thaliana GN=ZHD7 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.569e-7
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREV 403
            Y ECQKNHAA  GG+ VDGC EFMA GEEGT  AL CAAC CHR+FHR+EV
Sbjct:   60 YRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHRSFHRKEV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD9_ARATH (Zinc-finger homeodomain protein 9 OS=Arabidopsis thaliana GN=ZHD9 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.158e-7
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXX--XHRNFHRREVETEVACDCSSPPP 442
            Y EC KNHAA +GG+A+DGC EFM S     +   +       CHRNFHRRE +   A     PPP
Sbjct:   52 YKECLKNHAAAIGGHALDGCGEFMPSPSSTPSDPTSLKCAACGCHRNFHRRETDDSSAV----PPP 113
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9QMA1_9ROSA3.325e-1980.61Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A067GB00_CITSI5.173e-1980.22Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9H0F7_POPTR9.761e-1975.53Zinc finger family protein OS=Populus trichocarpa ... [more]
V7C1P4_PHAVU2.766e-1888.89Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A059A578_EUCGR4.879e-1888.89Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
F6H5T5_VITVI6.143e-1876.60Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A087GV61_ARAAL9.403e-1872.06Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
F6H5T3_VITVI2.482e-1782.54Putative uncharacterized protein OS=Vitis vinifera... [more]
B9T6Z4_RICCO2.718e-1779.57Transcription factor, putative OS=Ricinus communis... [more]
A0A068U165_COFCA3.079e-1784.62Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MIF4_ORYSJ1.621e-865.57Mini zinc finger protein 4 OS=Oryza sativa subsp. ... [more]
ZHD3_ARATH1.764e-860.00Zinc-finger homeodomain protein 3 OS=Arabidopsis t... [more]
ZHD1_ORYSI3.894e-873.58Zinc-finger homeodomain protein 1 OS=Oryza sativa ... [more]
ZHD1_ORYSJ3.932e-873.58Zinc-finger homeodomain protein 1 OS=Oryza sativa ... [more]
ZHD2_ARATH1.051e-771.70Zinc-finger homeodomain protein 2 OS=Arabidopsis t... [more]
ZHD8_ARATH2.922e-753.85Zinc-finger homeodomain protein 8 OS=Arabidopsis t... [more]
ZHD6_ARATH4.733e-769.23Zinc-finger homeodomain protein 6 OS=Arabidopsis t... [more]
ZHD7_ARATH7.569e-774.51Zinc-finger homeodomain protein 7 OS=Arabidopsis t... [more]
ZHD9_ARATH8.158e-746.97Zinc-finger homeodomain protein 9 OS=Arabidopsis t... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPFAMPF04770ZF-HD_dimercoord: 41..93
e-value: 1.2E-30
score: 105.4
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainTIGRFAMTIGR01566TIGR01566coord: 42..93
e-value: 1.0E-27
score: 94.3
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPRODOMPD125774coord: 43..105
e-value: 8.0E-17
score: 207.0
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPROSITEPS51523ZF_HD_DIMERcoord: 43..92
score: 26.346
NoneNo IPR availablePANTHERPTHR31948:SF12MINI ZINC FINGER PROTEIN 2coord: 11..105
NoneNo IPR availablePANTHERPTHR31948FAMILY NOT NAMEDcoord: 11..105

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017271 ID=g.arboreum_cottongen_reftransV1_0017271; Name=g.arboreum_cottongen_reftransV1_0017271; organism=Gossypium arboreum; type=contig; length=681bp
TTCACAACGACCAGTCTAGGGTTTACTATTGAGAAATTAAATAAGAACAA
ATCAGAAATACCCATTCTCAAGTAAGAAGCTATGCTATAAATATGTAATT
TAGGGTTAGGGCTATGGCCAATACATGAGACTAAAAGTACGATTTGGGAA
TCGATCGACGAAAATGAGGAAGCGACAAGTGGTACTGAGAAGGGAGGAGC
CACCAAGAAGCAGCAGCACCAATTCATCGTTGACAAGTAGAAGTGTGAGA
TATGCAGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGTTATGCTGT
TGATGGGTGCCGGGAATTCATGGCCAGCGGTGAAGAAGGAACAACTGCAG
CCCTTACTTGTGCTGCTTGCGGCTGCCATAGGAATTTCCATAGAAGGGAA
GTTGAAACTGAGGTAGCTTGTGACTGTTCATCACCTCCTCCTTTCAATGG
AGCATAATATATATGTAGCTTTATTAAATAAAATCACTTCTCATGTTTGT
ATAAATGGAAGGCTTTAATCATGTAATCTACCTATATATTTGCATTCTGC
TTATATATATATATGTTTCTTGAAAGAATGGGTTTCTTTCATAGCTTGTT
TTTCTATTATATTAAAAGATCAAAAGTATTTGTATTCATGTTTGGTTTTA
TGAAGAAATTAATGGGTGTTTTCTTCCATGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006456ZF_HD_homeobox_Cys/His_dimer