g.arboreum_cottongen_reftransV1_0009735, g.arboreum_cottongen_reftransV1_0009735 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009735
Unique Nameg.arboreum_cottongen_reftransV1_0009735
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0009735:1..303 .
Chr7:91525300..91525920 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A068UE67_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_19 OS=Coffea canephora GN=GSCOC_T00021250001 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.781e-46
Identity = 77/100 (77.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DG+KGG+DEEK++P+IGF  LR++LESELQKRYKEAAPATLALLEQRCS+V  ELAR+DSKIQ+TSDV+HLR+SAM+HAA I  HVG LIDGAADP P
Sbjct:  318 LRDGVKGGFDEEKYRPHIGFGCLRDFLESELQKRYKEAAPATLALLEQRCSEVTAELARMDSKIQSTSDVAHLRRSAMLHAASICGHVGALIDGAADPDP 417
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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A059BWJ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03311 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.705e-45
Identity = 77/100 (77.00%), Postives = 91/100 (91.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L +GIKGG+DEEKFK +IGF  LREYLE ELQKRYKEAAPATLALLEQRC++V  +L+R+DSKIQATSDV+HLR+SAM++AA ISNHVG L+DGAADP+P
Sbjct:  300 LREGIKGGFDEEKFKTHIGFGCLREYLEFELQKRYKEAAPATLALLEQRCNEVTSDLSRMDSKIQATSDVTHLRRSAMIYAASISNHVGALLDGAADPAP 399
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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A077S355_WHEAT (Chromosome 3B, genomic scaffold, cultivar Chinese Spring OS=Triticum aestivum GN=TRAES_3BF012600080CFD_c1 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.614e-45
Identity = 76/100 (76.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DG+KGG++EEKF PYIGF  LR+YLESELQKRYKEAAPATLALLEQRCSDV++EL+R+DSK+QATSDVS LR+SAM+HAA I  H+  L+DGAADP+P
Sbjct:  308 LRDGVKGGFNEEKFGPYIGFSCLRKYLESELQKRYKEAAPATLALLEQRCSDVSMELSRMDSKLQATSDVSQLRRSAMLHAASICTHLRALLDGAADPAP 407
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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: W5CC23_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.125e-45
Identity = 75/100 (75.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DG+KGG++EEKF PYIGF  LR+YLESELQKRYKEAAPATLALLEQRCSDV+++L+R+DSK+QATSDVS LR+SAM+HAA I  H+  L+DGAADP+P
Sbjct:  204 LRDGVKGGFNEEKFGPYIGFSCLRKYLESELQKRYKEAAPATLALLEQRCSDVSMDLSRLDSKLQATSDVSQLRRSAMLHAASICTHLRALLDGAADPAP 303
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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: M8A341_TRIUA (Dynamin-like protein C OS=Triticum urartu GN=TRIUR3_12193 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.023e-44
Identity = 75/100 (75.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DG+KGG++EEKF PYIGF  LR+YLESELQKRYKEAAPATLALLEQRCSDV+++L+R+DSK+QATSDVS LR+SAM+HAA I  H+  L+DGAADP+P
Sbjct:  237 LRDGVKGGFNEEKFGPYIGFSCLRKYLESELQKRYKEAAPATLALLEQRCSDVSMDLSRLDSKLQATSDVSQLRRSAMLHAASICTHLRALLDGAADPAP 336
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy Swiss-Prot
Match: DRP5A_ARATH (Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.483e-44
Identity = 72/100 (72.00%), Postives = 89/100 (89.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L +G+KGG+DEEKF+  IGF SLR++LESELQKRYKEAAPATLALLE+RCS+V  ++ R+D KIQATSDV+HLRK+AM++ A ISNHVG LIDGAA+P+P
Sbjct:  307 LREGVKGGFDEEKFRSCIGFGSLRDFLESELQKRYKEAAPATLALLEERCSEVTDDMLRMDMKIQATSDVAHLRKAAMLYTASISNHVGALIDGAANPAP 406
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068UE67_COFCA5.781e-4677.00Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A059BWJ0_EUCGR4.705e-4577.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A077S355_WHEAT5.614e-4576.00Chromosome 3B, genomic scaffold, cultivar Chinese ... [more]
W5CC23_WHEAT7.125e-4575.00Uncharacterized protein OS=Triticum aestivum PE=4 ... [more]
M8A341_TRIUA1.023e-4475.00Dynamin-like protein C OS=Triticum urartu GN=TRIUR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRP5A_ARATH5.483e-4472.00Dynamin-related protein 5A OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11566:SF44DYNAMIN-LIKE PROTEIN Ccoord: 5..98
IPR022812Dynamin superfamilyPANTHERPTHR11566DYNAMINcoord: 5..98

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009735 ID=g.arboreum_cottongen_reftransV1_0009735; Name=g.arboreum_cottongen_reftransV1_0009735; organism=Gossypium arboreum; type=contig; length=303bp
ATTTGCATGATGGAATCAAGGGAGGTTATGATGAAGAAAAGTTCAAGCCC
TATATTGGTTTTTGTTCTTTGAGGGAGTATTTGGAATCAGAACTACAAAA
GAGATACAAAGAAGCTGCCCCAGCTACACTGGCATTGCTTGAGCAGCGCT
GCAGTGATGTTAACATTGAGCTGGCAAGAATTGACTCCAAAATACAAGCA
ACTTCCGATGTTTCTCATCTTCGAAAATCAGCCATGATGCATGCGGCATA
TATAAGCAATCATGTGGGGGTTTTGATCGATGGAGCAGCAGATCCTTCCC
CCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR022812Dynamin