g.arboreum_cottongen_reftransV1_0015233, g.arboreum_cottongen_reftransV1_0015233 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: G7KST6_MEDTR (Calvin cycle protein CP12-1 OS=Medicago truncatula GN=MTR_7g109520 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.176e-40 Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 2 Query: 122 MATLSSVN-LVTPRIIANGPDVP-TVKV----PCLNRPWKRVSPMKLRV-GPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT+ ++ L P+++ N P T+K+ P R W ++ V PVRAAP+ IS+KVE+SIK AQE C+DDP SGECVAAWDEVEELSAAASHARD+KKD DPLE+YCKDNPETDEC+T+D Sbjct: 1 MATIGGLSSLSNPKLLFNSSGFPQTIKISPATPLQTR-WGVAGSGRMTVVRPVRAAPEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKDSDPLEDYCKDNPETDECKTFDT 128
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: R0FT88_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019023mg PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.069e-39 Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 2 Query: 122 MATL-SSVNLVTPRIIANGPD--VPTVKVPCLNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487 MAT+ +S+N+ T R++ + V LN PW R + ++ PV+AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D DPLE YCKDNPET+ECRTYDN Sbjct: 1 MATIATSLNIATQRVVFTSENRSVHLTGPVRLNNPWNLGSRTTSRMVKFSPVKAAPEGGISDVVEKSIKEAQETCAGDPESGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: I3S361_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.523e-39 Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 125 ATLSSVNLVTPRIIANGPD-------VPTVKVPCLNRPWKRV--SPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 AT++ V+L +PR+I GP+ + + V LN+ W S + + PV+A+PD I+ KVE+SIK A+E C+ D SGECVAAWDEVEELSAAASHARDKKK DPLE YCKDNPETDECRTYDN Sbjct: 3 ATMAGVSLSSPRVIFKGPESLQKSQAIRSGPVFMLNQRWTGAVSSGRMVSIRPVQASPD-ITGKVEESIKSAEETCAGDATSGECVAAWDEVEELSAAASHARDKKKTSDPLEEYCKDNPETDECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: M1AB57_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007286 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.706e-39 Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKR---VSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MA+++ V++ TPRI ++ P + +K P LN PWK+ S ++ V R PD +S+ V +S+KEA+E C++DP SGEC AAWD VEE SAAASHARD+KK+ D LENYCKDNPETDECRTYDN Sbjct: 1 MASIAGVSITTPRISSDSPKIQPLKFPTLNSPWKKSGQFSYGRMYVVVPRVVPDKKLSDLVAESVKEAEEACAEDPVSGECKAAWDVVEETSAAASHARDRKKESDVLENYCKDNPETDECRTYDN 126
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: V7D0Z7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G212900g PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.902e-39 Identity = 78/132 (59.09%), Postives = 92/132 (69.70%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVP------TVKVPCLN--RPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKK--KDDDPLENYCKDNPETDECRTYDN 487 MAT++ V+L +PR+ N P +P RP R+ PVRAAPD ISEKVE+SIK+AQE C+ DP SGECVAAWDEVEELSAAASHARDK+ KD DPLENYCKDNPET EC+T+D+ Sbjct: 1 MATMTGVSLSSPRVWFNASGSPQNAHAINFALPLRQAMRPGGIQMGRVTRIRPVRAAPDKISEKVEESIKQAQEACAGDPTSGECVAAWDEVEELSAAASHARDKQKEKDSDPLENYCKDNPETIECKTFDD 132
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.542e-40 Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2 Query: 122 MATLSS-VNLVTPRIIANGPDVPT-VKVPC-LNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487 MAT+++ +N+ T R+ + P + P LN W R + +++ P++AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D DPLE YCKDNPET+ECRTYDN Sbjct: 1 MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.809e-38 Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 2 Query: 206 LNRPWKRVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 LN PWK S ++ V V+A +G ISEKVEKSI+EA+E C+DDP SGECVAAWDEVEELSAAASHARDKKK DPLE YC DNPETDECRTYDN Sbjct: 30 LNYPWKFGSMKRMVV--VKATSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.266e-16 Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 272 DGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 + +SE +E+ +KEA E+C + S EC AWDEVEE+S A + R K K + DPLE++C++NPETDECR Y++ Sbjct: 61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.918e-15 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2 Query: 278 ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD----DPLENYCKDNPETDECRTYDN 487 +++KV+ ++KEA++ C+ S +C AWD VEELSAA SH +D K D DPLE +CKD P+ DECR Y++ Sbjct: 35 LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015233 ID=g.arboreum_cottongen_reftransV1_0015233; Name=g.arboreum_cottongen_reftransV1_0015233; organism=Gossypium arboreum; type=contig; length=627bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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