g.arboreum_cottongen_reftransV1_0015233, g.arboreum_cottongen_reftransV1_0015233 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015233
Unique Nameg.arboreum_cottongen_reftransV1_0015233
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length627
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0015233:1..627 .
Chr6:88508834..88509460 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: F6HPR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02480 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.289e-46
Identity = 84/128 (65.62%), Postives = 100/128 (78.12%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVP---TVKVPCLNRPWKRVSPM---KLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ V+L TPR++A   D P   T++ P L+ PWKR S     ++ V PV AAPD ISEKV +SIK A+E CSDDPASGECVAAWDEVEELSAAASHARDKKK+ DPLE YCKDNPE +ECRTY++
Sbjct:   70 MATIAGVSLSTPRVLARAADSPKSQTIQSPWLSNPWKRPSRFGAGRMCVRPVAAAPDSISEKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDNPEDEECRTYED 197          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B7XB92_FAGCR (Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.516e-45
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVP---TVKVPCLNRPWKR-----VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ +NL TPR++A   D P   T+K P L+  WKR      +   ++V PV AAP+ IS+KV +SIK+A+E C+ DPASGECVAAWDEVEELSAAASHARDKKK  DPLE YCKDNPET+ECRTY++
Sbjct:    1 MATIAGLNLSTPRVLAKSADSPKAQTIKSPWLSHSWKRPTLFGYAGRSMQVRPVSAAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNPETEECRTYED 130          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: O24292_PEA (CP12 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.659e-45
Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVP-TVKV----PCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT+S ++L  PR++ N P  P T+K+    P   R     S     V PVRAAP+ IS+KVE+SIK AQE C+DDP SGECVAAWDEVEELSAAASHARD+KK+ DPLE+YCKDNPETDEC+TYDN
Sbjct:    1 MATISGLSLSNPRLLFNSPGFPQTIKISSASPLSTRQTLTGSGRMKIVQPVRAAPEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKESDPLEDYCKDNPETDECKTYDN 127          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: F1DT11_9FABA (Chloroplast protein 12 OS=Stylosanthes guianensis GN=CP12 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.903e-44
Identity = 86/136 (63.24%), Postives = 101/136 (74.26%), Query Frame = 2
Query:  122 MATLSSVNLVTP-RIIANGPDVP----TVK---VPCLNRPW------KRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT+S + L +P R++A GP++P    TVK   V  LN+ W       RVS ++L    VRAAPD ISE+VEKSI +AQE C+D+PA  EC AAWDEVEELSAAASHARDKKK+ DPLENYCKDNPETDECR YDN
Sbjct:    1 MATISGMTLSSPTRVLAQGPEIPQKAQTVKFSPVVRLNQRWPALTSSNRVSSVRL----VRAAPDRISERVEKSISDAQEACNDNPAGSECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPETDECRAYDN 132          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: M5W6P4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013259mg PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.687e-44
Identity = 80/132 (60.61%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  116 LPMATLSSVNLVTPRIIANGPDVPTVKVPC-LNRPWKRVSPMK-------LRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            +  AT++ V+L TPR++A   + P    P  L+ PW+R    +         + PV AAPD ISEKV +SIK A+E CSDDPASGECVAAWDEVEELSAAASHARD KK  DPLE +CKDNPETDECRTYDN
Sbjct:    1 MATATVAGVSLSTPRMLAKATETPKAFQPAWLSNPWRRSGGQQLLGGGRMTMIRPVSAAPDKISEKVAESIKSAEETCSDDPASGECVAAWDEVEELSAAASHARDNKKTSDPLETFCKDNPETDECRTYDN 132          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A067H4Q8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032973mg PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.068e-42
Identity = 83/132 (62.88%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVP-----CLNRPWKRVSPMKLRVG-----PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ VNL TP + A   D P  KV       LN P  R  P + R G     P+RAAPD ISEKVE+SIK A+E C  DPASGEC AAWDEVEELSAAASHAR++KKD DPLE YCKDNPETDECRTY++
Sbjct:    1 MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNP-SRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: V4VWN9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022841mg PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.068e-42
Identity = 83/132 (62.88%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVP-----CLNRPWKRVSPMKLRVG-----PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ VNL TP + A   D P  KV       LN P  R  P + R G     P+RAAPD ISEKVE+SIK A+E C  DPASGEC AAWDEVEELSAAASHAR++KKD DPLE YCKDNPETDECRTY++
Sbjct:    1 MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNP-SRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: D7LT64_ARALL (CP12-2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486746 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.284e-41
Identity = 81/131 (61.83%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  122 MATL-SSVNLVTPRIIANGPDVPTVKVP--CLNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487
            MAT+ +S+N+ T R+I    + P +      LN PW    R +   +++ P+RAAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D  DPLE YCKDNPET+ECRTYDN
Sbjct:    1 MATIATSLNIATQRVIVTSENRPVLLAGPVHLNNPWNLGSRTTNRMVKLKPIRAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKSDGSDPLEEYCKDNPETNECRTYDN 131          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A068V8F3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_144 OS=Coffea canephora GN=GSCOC_T00004981001 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.632e-41
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVSPMK-----LRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MA ++ V+L TP+I+       T+K PCLN P K  +        L V P+ AAP+ +S++V +S+K A+E C+ DP SGEC AAWDEVEELSAAASHARD+KK+ D LE+YCKDNPET+ECRTYDN
Sbjct:    1 MAAIAGVSLSTPQILLFKASHSTLKFPCLNHPCKSSTTAHFVHRGLSVRPLAAAPERLSDQVAESVKHAEEACAGDPESGECAAAWDEVEELSAAASHARDRKKETDVLEDYCKDNPETEECRTYDN 127          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A022S213_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016182mg PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.450e-40
Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  134 SSVNLVTPRIIANGPDVPTVKVPC----LNRPWKRVSPMKLR------VGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            + V++ TP+I A      +   P     LN PWK     + +      V PV AAPD +S+KVE+SIK+AQE CS DP SGEC AAWDEVEELSAA SHA+DK KD DPLE YCKDNPETDECRTYDN
Sbjct:    4 AGVSITTPKIFAKASSDSSRSHPINFSQLNSPWKGCGAAQFKQSRMFVVRPVAAAPDQLSQKVEQSIKDAQEACSGDPVSGECAAAWDEVEELSAAVSHAKDKSKDTDPLETYCKDNPETDECRTYDN 131          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.542e-40
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  122 MATLSS-VNLVTPRIIANGPDVPT-VKVPC-LNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487
            MAT+++ +N+ T R+     + P  +  P  LN  W    R +   +++ P++AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D  DPLE YCKDNPET+ECRTYDN
Sbjct:    1 MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.809e-38
Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  206 LNRPWKRVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487
            LN PWK  S  ++ V  V+A  +G ISEKVEKSI+EA+E C+DDP SGECVAAWDEVEELSAAASHARDKKK    DPLE YC DNPETDECRTYDN
Sbjct:   30 LNYPWKFGSMKRMVV--VKATSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.266e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  272 DGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487
            + +SE +E+ +KEA E+C  +  S EC  AWDEVEE+S A +  R K K  + DPLE++C++NPETDECR Y++
Sbjct:   61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.918e-15
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  278 ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD----DPLENYCKDNPETDECRTYDN 487
            +++KV+ ++KEA++ C+    S +C  AWD VEELSAA SH +D  K D    DPLE +CKD P+ DECR Y++
Sbjct:   35 LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6HPR1_VITVI7.289e-4665.63Putative uncharacterized protein OS=Vitis vinifera... [more]
B7XB92_FAGCR2.516e-4561.54Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE... [more]
O24292_PEA3.659e-4563.78CP12 OS=Pisum sativum PE=2 SV=1[more]
F1DT11_9FABA3.903e-4463.24Chloroplast protein 12 OS=Stylosanthes guianensis ... [more]
M5W6P4_PRUPE4.687e-4460.61Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067H4Q8_CITSI3.068e-4262.88Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4VWN9_9ROSI3.068e-4262.88Uncharacterized protein OS=Citrus clementina GN=CI... [more]
D7LT64_ARALL2.284e-4161.83CP12-2 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL... [more]
A0A068V8F3_COFCA6.632e-4156.69Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A022S213_ERYGU1.450e-4058.59Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CP122_ARATH1.542e-4059.54Calvin cycle protein CP12-2, chloroplastic OS=Arab... [more]
CP121_ARATH8.809e-3873.20Calvin cycle protein CP12-1, chloroplastic OS=Arab... [more]
CP123_ARATH1.266e-1650.00Calvin cycle protein CP12-3, chloroplastic OS=Arab... [more]
CP12_CHLRE5.918e-1548.65Calvin cycle protein CP12, chloroplastic OS=Chlamy... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003823Domain of unknown function CP12SMARTSM01093CP12_2coord: 53..122
e-value: 1.6E-31
score: 120.7
IPR003823Domain of unknown function CP12PFAMPF02672CP12coord: 53..121
e-value: 4.0E-29
score: 101.1
NoneNo IPR availablePANTHERPTHR33921:SF2CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATEDcoord: 2..122
NoneNo IPR availablePANTHERPTHR33921FAMILY NOT NAMEDcoord: 2..122

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015233 ID=g.arboreum_cottongen_reftransV1_0015233; Name=g.arboreum_cottongen_reftransV1_0015233; organism=Gossypium arboreum; type=contig; length=627bp
AAAATGATAAGAAATTTGTGTTCATCAACCATTAGAAAAACCCTTATATT
TTTCATCCCCGGTCTTAGCATAACCATTACATCATTTCCAGTCATAATAT
CCAAACACAGTAACATTACCAATGGCAACCCTGTCTAGCGTGAACCTCGT
AACCCCAAGAATCATAGCCAATGGACCAGACGTCCCAACCGTCAAGGTCC
CATGCCTTAACCGGCCTTGGAAAAGGGTATCCCCAATGAAGCTGCGTGTC
GGGCCTGTTAGAGCTGCACCGGATGGAATATCGGAGAAGGTGGAGAAAAG
CATAAAAGAGGCACAAGAGATGTGTTCGGATGATCCGGCGAGTGGCGAGT
GTGTGGCGGCTTGGGACGAAGTGGAAGAGCTGAGTGCGGCGGCTAGCCAC
GCTAGGGACAAGAAGAAAGACGATGATCCTTTGGAGAATTACTGTAAAGA
CAACCCGGAGACGGATGAGTGTCGTACTTATGATAATTGAAAATGTTTGT
TTTTTCTAGTTTCTTAGATTATAGTTGGATGTTAATCTGAAATATATTTT
ATTGTTGGTTTATATAGTTTGTTATAATGATGTAATCCTAAAATTATACA
CTCCTAGAAAAGAAAATGATATCAATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003823DUF_CP12