g.arboreum_cottongen_reftransV1_0015233, g.arboreum_cottongen_reftransV1_0015233 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: F6HPR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02480 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 7.289e-46 Identity = 84/128 (65.62%), Postives = 100/128 (78.12%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVP---TVKVPCLNRPWKRVSPM---KLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ V+L TPR++A D P T++ P L+ PWKR S ++ V PV AAPD ISEKV +SIK A+E CSDDPASGECVAAWDEVEELSAAASHARDKKK+ DPLE YCKDNPE +ECRTY++ Sbjct: 70 MATIAGVSLSTPRVLARAADSPKSQTIQSPWLSNPWKRPSRFGAGRMCVRPVAAAPDSISEKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDNPEDEECRTYED 197
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B7XB92_FAGCR (Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.516e-45 Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVP---TVKVPCLNRPWKR-----VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ +NL TPR++A D P T+K P L+ WKR + ++V PV AAP+ IS+KV +SIK+A+E C+ DPASGECVAAWDEVEELSAAASHARDKKK DPLE YCKDNPET+ECRTY++ Sbjct: 1 MATIAGLNLSTPRVLAKSADSPKAQTIKSPWLSHSWKRPTLFGYAGRSMQVRPVSAAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNPETEECRTYED 130
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: O24292_PEA (CP12 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.659e-45 Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVP-TVKV----PCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT+S ++L PR++ N P P T+K+ P R S V PVRAAP+ IS+KVE+SIK AQE C+DDP SGECVAAWDEVEELSAAASHARD+KK+ DPLE+YCKDNPETDEC+TYDN Sbjct: 1 MATISGLSLSNPRLLFNSPGFPQTIKISSASPLSTRQTLTGSGRMKIVQPVRAAPEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKESDPLEDYCKDNPETDECKTYDN 127
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: F1DT11_9FABA (Chloroplast protein 12 OS=Stylosanthes guianensis GN=CP12 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.903e-44 Identity = 86/136 (63.24%), Postives = 101/136 (74.26%), Query Frame = 2 Query: 122 MATLSSVNLVTP-RIIANGPDVP----TVK---VPCLNRPW------KRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT+S + L +P R++A GP++P TVK V LN+ W RVS ++L VRAAPD ISE+VEKSI +AQE C+D+PA EC AAWDEVEELSAAASHARDKKK+ DPLENYCKDNPETDECR YDN Sbjct: 1 MATISGMTLSSPTRVLAQGPEIPQKAQTVKFSPVVRLNQRWPALTSSNRVSSVRL----VRAAPDRISERVEKSISDAQEACNDNPAGSECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPETDECRAYDN 132
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: M5W6P4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013259mg PE=4 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.687e-44 Identity = 80/132 (60.61%), Postives = 94/132 (71.21%), Query Frame = 2 Query: 116 LPMATLSSVNLVTPRIIANGPDVPTVKVPC-LNRPWKRVSPMK-------LRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 + AT++ V+L TPR++A + P P L+ PW+R + + PV AAPD ISEKV +SIK A+E CSDDPASGECVAAWDEVEELSAAASHARD KK DPLE +CKDNPETDECRTYDN Sbjct: 1 MATATVAGVSLSTPRMLAKATETPKAFQPAWLSNPWRRSGGQQLLGGGRMTMIRPVSAAPDKISEKVAESIKSAEETCSDDPASGECVAAWDEVEELSAAASHARDNKKTSDPLETFCKDNPETDECRTYDN 132
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A067H4Q8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032973mg PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.068e-42 Identity = 83/132 (62.88%), Postives = 94/132 (71.21%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVP-----CLNRPWKRVSPMKLRVG-----PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ VNL TP + A D P KV LN P R P + R G P+RAAPD ISEKVE+SIK A+E C DPASGEC AAWDEVEELSAAASHAR++KKD DPLE YCKDNPETDECRTY++ Sbjct: 1 MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNP-SRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: V4VWN9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022841mg PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.068e-42 Identity = 83/132 (62.88%), Postives = 94/132 (71.21%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVP-----CLNRPWKRVSPMKLRVG-----PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ VNL TP + A D P KV LN P R P + R G P+RAAPD ISEKVE+SIK A+E C DPASGEC AAWDEVEELSAAASHAR++KKD DPLE YCKDNPETDECRTY++ Sbjct: 1 MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNP-SRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: D7LT64_ARALL (CP12-2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486746 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.284e-41 Identity = 81/131 (61.83%), Postives = 97/131 (74.05%), Query Frame = 2 Query: 122 MATL-SSVNLVTPRIIANGPDVPTVKVP--CLNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487 MAT+ +S+N+ T R+I + P + LN PW R + +++ P+RAAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D DPLE YCKDNPET+ECRTYDN Sbjct: 1 MATIATSLNIATQRVIVTSENRPVLLAGPVHLNNPWNLGSRTTNRMVKLKPIRAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKSDGSDPLEEYCKDNPETNECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A068V8F3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_144 OS=Coffea canephora GN=GSCOC_T00004981001 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.632e-41 Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVSPMK-----LRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MA ++ V+L TP+I+ T+K PCLN P K + L V P+ AAP+ +S++V +S+K A+E C+ DP SGEC AAWDEVEELSAAASHARD+KK+ D LE+YCKDNPET+ECRTYDN Sbjct: 1 MAAIAGVSLSTPQILLFKASHSTLKFPCLNHPCKSSTTAHFVHRGLSVRPLAAAPERLSDQVAESVKHAEEACAGDPESGECAAAWDEVEELSAAASHARDRKKETDVLEDYCKDNPETEECRTYDN 127
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A022S213_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016182mg PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.450e-40 Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = 2 Query: 134 SSVNLVTPRIIANGPDVPTVKVPC----LNRPWKRVSPMKLR------VGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 + V++ TP+I A + P LN PWK + + V PV AAPD +S+KVE+SIK+AQE CS DP SGEC AAWDEVEELSAA SHA+DK KD DPLE YCKDNPETDECRTYDN Sbjct: 4 AGVSITTPKIFAKASSDSSRSHPINFSQLNSPWKGCGAAQFKQSRMFVVRPVAAAPDQLSQKVEQSIKDAQEACSGDPVSGECAAAWDEVEELSAAVSHAKDKSKDTDPLETYCKDNPETDECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.542e-40 Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2 Query: 122 MATLSS-VNLVTPRIIANGPDVPT-VKVPC-LNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487 MAT+++ +N+ T R+ + P + P LN W R + +++ P++AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D DPLE YCKDNPET+ECRTYDN Sbjct: 1 MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.809e-38 Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 2 Query: 206 LNRPWKRVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 LN PWK S ++ V V+A +G ISEKVEKSI+EA+E C+DDP SGECVAAWDEVEELSAAASHARDKKK DPLE YC DNPETDECRTYDN Sbjct: 30 LNYPWKFGSMKRMVV--VKATSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.266e-16 Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 272 DGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 + +SE +E+ +KEA E+C + S EC AWDEVEE+S A + R K K + DPLE++C++NPETDECR Y++ Sbjct: 61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.918e-15 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2 Query: 278 ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD----DPLENYCKDNPETDECRTYDN 487 +++KV+ ++KEA++ C+ S +C AWD VEELSAA SH +D K D DPLE +CKD P+ DECR Y++ Sbjct: 35 LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015233 ID=g.arboreum_cottongen_reftransV1_0015233; Name=g.arboreum_cottongen_reftransV1_0015233; organism=Gossypium arboreum; type=contig; length=627bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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