g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008440
Unique Nameg.arboreum_cottongen_reftransV1_0008440
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length547
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0008440:1..547 .
Chr11:35196934..35198944 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0B2R6R2_GLYSO (Protein EFR3 like B OS=Glycine soja GN=glysoja_010479 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.360e-63
Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+ T+DP+L+LV+D  LQAVC+ES+ I  GS+EDE AA KSL  + LDD  LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY  G PL     RPCSPLAQ++F +FDE+ +           E +GSQS  K SLS N  DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V
Sbjct:  686 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 876          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A068V6W8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_132 OS=Coffea canephora GN=GSCOC_T00018936001 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.552e-61
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAV--CVESDIKD-GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL--SRPC--SPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTD+T+DPYLKLVED  LQA+   V ++ K  GS++DE AALKSL  I  +D HLKE VISHFMTK+ +LSE ELS+IK QL EGFSPDDAY LG PL    PC  SPLA+M FQ+F+E M  A + DE     A+GSQSGRK SLS+N LD+LS N+LL+S LETAR V S  VS+ PIPYDQ+KSQCEA V
Sbjct:  728 LTDETVDPYLKLVEDMRLQALSTTVINETKGYGSQDDEVAALKSLSKIESNDQHLKELVISHFMTKYGRLSEAELSNIKSQLQEGFSPDDAYPLGAPLFMETPCPSSPLAEMDFQTFNEIMAPAGLADEESFPDASGSQSGRKTSLSVNSLDILSVNQLLESVLETARHVASLPVSSTPIPYDQVKSQCEALV 920          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A059AVD6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00374 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 9.417e-61
Identity = 114/193 (59.07%), Postives = 143/193 (74.09%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTD+TIDPYL+L+ED  LQAVC+ES+++    GS+EDE AALKSL  I+ DD  LKE ++SH +TK   LSE+ELS +K+Q L+ FSPD+AY LG PL     RPCSPLAQ+  Q+FDE MPL  +TD     E +GSQS RK SLS + +D+++ N+LL S LETARQV S  VS+ PIPYDQMK+QCEA V
Sbjct:  518 LTDRTIDPYLELIEDIRLQAVCIESNLEKKSYGSEEDEAAALKSLSEISSDDQQLKEIILSHLITKCGDLSEEELSDLKRQFLQAFSPDEAYPLGAPLFMETPRPCSPLAQLVSQAFDEAMPLVDMTDDDAFLEPSGSQSDRKTSLSSSAVDIINVNQLLASVLETARQVASLPVSSVPIPYDQMKNQCEALV 710          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: Q52UN1_CUCSA (Cyclin-related protein 1 (Fragment) OS=Cucumis sativus GN=M1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.287e-60
Identity = 114/193 (59.07%), Postives = 141/193 (73.06%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            L +K +DP+L+LV D  L AV V+S+   +  GS+EDE AALK L  + LD+  LKETV+SHF  K+  LSE ELSSI++QLL GF PD+AY LG PL     RPCSPLA++ F  +DE MP AA+TD     E +GSQS RK SLSI+ LD+L+ N+LL+S LETARQV SF VS+AP+PYDQMKSQCEA V
Sbjct:  207 LDNKMVDPHLQLVNDIRLLAVRVKSEKDSVPFGSEEDEVAALKFLSILELDEQQLKETVVSHFTIKYANLSEAELSSIREQLLHGFLPDEAYPLGAPLFMETPRPCSPLAKLAFPDYDEGMPPAALTDDEAFLEPSGSQSDRKTSLSISNLDILNVNQLLESVLETARQVASFPVSSAPVPYDQMKSQCEALV 399          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A059AUG4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00374 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.765e-60
Identity = 114/193 (59.07%), Postives = 143/193 (74.09%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTD+TIDPYL+L+ED  LQAVC+ES+++    GS+EDE AALKSL  I+ DD  LKE ++SH +TK   LSE+ELS +K+Q L+ FSPD+AY LG PL     RPCSPLAQ+  Q+FDE MPL  +TD     E +GSQS RK SLS + +D+++ N+LL S LETARQV S  VS+ PIPYDQMK+QCEA V
Sbjct:  733 LTDRTIDPYLELIEDIRLQAVCIESNLEKKSYGSEEDEAAALKSLSEISSDDQQLKEIILSHLITKCGDLSEEELSDLKRQFLQAFSPDEAYPLGAPLFMETPRPCSPLAQLVSQAFDEAMPLVDMTDDDAFLEPSGSQSDRKTSLSSSAVDIINVNQLLASVLETARQVASLPVSSVPIPYDQMKNQCEALV 925          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2R6R2_GLYSO5.360e-6362.30Protein EFR3 like B OS=Glycine soja GN=glysoja_010... [more]
A0A068V6W8_COFCA1.552e-6163.21Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A059AVD6_EUCGR9.417e-6159.07Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
Q52UN1_CUCSA2.287e-6059.07Cyclin-related protein 1 (Fragment) OS=Cucumis sat... [more]
A0A059AUG4_EUCGR2.765e-6059.07Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12444UNCHARACTERIZEDcoord: 1..181
NoneNo IPR availablePANTHERPTHR12444:SF2ARM REPEAT SUPERFAMILY PROTEINcoord: 1..181

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008440 ID=g.arboreum_cottongen_reftransV1_0008440; Name=g.arboreum_cottongen_reftransV1_0008440; organism=Gossypium arboreum; type=contig; length=547bp
CCCATTACACTAGCTTCACACTGACTCTTCATCTGGTCATAAGGAATAGG
TGCTGCAGAAACCGAAAAGCTTACAACTTGCCGGGCAGTTTCCAGAGCCG
AATCCAATAGCTCATTGGCACTTAAGACATCTAGTTCATTTATGGATAAT
GATGCTTTGCGACCTGACTGACTTCCATTGGCTTCATCTGTTACAGCAGC
TAGAGGCATCTCATCAAATGACTGAAACTTCATCTGCGCAAGAGGAGAAC
ATGGTCTTGACAACGGAACACCTAATGAATATGCATCATCGGGTGAAAAG
CCCTCAAGAAGCTGTTTCTTTATACTTGATAATTCATCCTCTGATAATTT
CTTAAATTTGGTCATGAAATGGGATATGACAGTCTCCTTCAAATGGAGGT
CATCAAGCGTTATTGCCAATAGGGATTTTAATGCAGCATCTTCATCTTCT
TTTGATCCATCTTTTATATCAGATTCCACACATACAGCCTGAAGTCCAGC
ATCTTCAACTAATTTGAGATAAGGATCAATCGTTTTATCTGTCAGAG
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