g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0B2R6R2_GLYSO (Protein EFR3 like B OS=Glycine soja GN=glysoja_010479 PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 5.360e-63 Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+ T+DP+L+LV+D LQAVC+ES+ I GS+EDE AA KSL + LDD LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY G PL RPCSPLAQ++F +FDE+ + E +GSQS K SLS N DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V Sbjct: 686 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 876
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A068V6W8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_132 OS=Coffea canephora GN=GSCOC_T00018936001 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.552e-61 Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAV--CVESDIKD-GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL--SRPC--SPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LTD+T+DPYLKLVED LQA+ V ++ K GS++DE AALKSL I +D HLKE VISHFMTK+ +LSE ELS+IK QL EGFSPDDAY LG PL PC SPLA+M FQ+F+E M A + DE A+GSQSGRK SLS+N LD+LS N+LL+S LETAR V S VS+ PIPYDQ+KSQCEA V Sbjct: 728 LTDETVDPYLKLVEDMRLQALSTTVINETKGYGSQDDEVAALKSLSKIESNDQHLKELVISHFMTKYGRLSEAELSNIKSQLQEGFSPDDAYPLGAPLFMETPCPSSPLAEMDFQTFNEIMAPAGLADEESFPDASGSQSGRKTSLSVNSLDILSVNQLLESVLETARHVASLPVSSTPIPYDQVKSQCEALV 920
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A059AVD6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00374 PE=4 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 9.417e-61 Identity = 114/193 (59.07%), Postives = 143/193 (74.09%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LTD+TIDPYL+L+ED LQAVC+ES+++ GS+EDE AALKSL I+ DD LKE ++SH +TK LSE+ELS +K+Q L+ FSPD+AY LG PL RPCSPLAQ+ Q+FDE MPL +TD E +GSQS RK SLS + +D+++ N+LL S LETARQV S VS+ PIPYDQMK+QCEA V Sbjct: 518 LTDRTIDPYLELIEDIRLQAVCIESNLEKKSYGSEEDEAAALKSLSEISSDDQQLKEIILSHLITKCGDLSEEELSDLKRQFLQAFSPDEAYPLGAPLFMETPRPCSPLAQLVSQAFDEAMPLVDMTDDDAFLEPSGSQSDRKTSLSSSAVDIINVNQLLASVLETARQVASLPVSSVPIPYDQMKNQCEALV 710
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: Q52UN1_CUCSA (Cyclin-related protein 1 (Fragment) OS=Cucumis sativus GN=M1 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 2.287e-60 Identity = 114/193 (59.07%), Postives = 141/193 (73.06%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 L +K +DP+L+LV D L AV V+S+ + GS+EDE AALK L + LD+ LKETV+SHF K+ LSE ELSSI++QLL GF PD+AY LG PL RPCSPLA++ F +DE MP AA+TD E +GSQS RK SLSI+ LD+L+ N+LL+S LETARQV SF VS+AP+PYDQMKSQCEA V Sbjct: 207 LDNKMVDPHLQLVNDIRLLAVRVKSEKDSVPFGSEEDEVAALKFLSILELDEQQLKETVVSHFTIKYANLSEAELSSIREQLLHGFLPDEAYPLGAPLFMETPRPCSPLAKLAFPDYDEGMPPAALTDDEAFLEPSGSQSDRKTSLSISNLDILNVNQLLESVLETARQVASFPVSSAPVPYDQMKSQCEALV 399
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A059AUG4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00374 PE=4 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.765e-60 Identity = 114/193 (59.07%), Postives = 143/193 (74.09%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LTD+TIDPYL+L+ED LQAVC+ES+++ GS+EDE AALKSL I+ DD LKE ++SH +TK LSE+ELS +K+Q L+ FSPD+AY LG PL RPCSPLAQ+ Q+FDE MPL +TD E +GSQS RK SLS + +D+++ N+LL S LETARQV S VS+ PIPYDQMK+QCEA V Sbjct: 733 LTDRTIDPYLELIEDIRLQAVCIESNLEKKSYGSEEDEAAALKSLSEISSDDQQLKEIILSHLITKCGDLSEEELSDLKRQFLQAFSPDEAYPLGAPLFMETPRPCSPLAQLVSQAFDEAMPLVDMTDDDAFLEPSGSQSDRKTSLSSSAVDIINVNQLLASVLETARQVASLPVSSVPIPYDQMKNQCEALV 925 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008440 ID=g.arboreum_cottongen_reftransV1_0008440; Name=g.arboreum_cottongen_reftransV1_0008440; organism=Gossypium arboreum; type=contig; length=547bpback to top |