g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008440
Unique Nameg.arboreum_cottongen_reftransV1_0008440
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length547
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0008440:1..547 .
Chr11:35196934..35198944 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A061EJ56_THECC (ARM repeat superfamily protein isoform 5 OS=Theobroma cacao GN=TCM_020051 PE=4 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.599e-77
Identity = 142/193 (73.58%), Postives = 156/193 (80.83%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTDKT+DPYLKLVED  LQAVCV+SD+     GSKED+ AA KSLL+I  D  HLKETVISH MT+F+KLSEDELSSI+KQLL+GFSPDDAY LG PL     RPCSPLAQM FQ+F+E +PLAA+TDE     ANGSQS RK SLSI+ LDVLS NELLDS LETARQV SFSVS  PIPYDQMKSQCEA V
Sbjct:  706 LTDKTVDPYLKLVEDIQLQAVCVKSDVDGVAYGSKEDDLAASKSLLSIEPDP-HLKETVISHLMTRFEKLSEDELSSIQKQLLQGFSPDDAYPLGAPLFMETPRPCSPLAQMGFQAFEEILPLAAMTDEEAFPEANGSQSDRKTSLSISTLDVLSVNELLDSVLETARQVASFSVSPTPIPYDQMKSQCEALV 897          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067DWW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.151e-75
Identity = 136/193 (70.47%), Postives = 155/193 (80.31%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            +T+KT+DPYL+LVED  LQAVC +S  +K   GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL     RPCSPLA+M+FQ+FDE MPLAA+TD     E NGSQS RK SLS+N LD+LS NELLDS LETARQV S+ V +  +PYDQMKSQCEA V
Sbjct:  697 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALV 889          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067E8U2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.424e-75
Identity = 136/193 (70.47%), Postives = 155/193 (80.31%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            +T+KT+DPYL+LVED  LQAVC +S  +K   GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL     RPCSPLA+M+FQ+FDE MPLAA+TD     E NGSQS RK SLS+N LD+LS NELLDS LETARQV S+ V +  +PYDQMKSQCEA V
Sbjct:  718 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALV 910          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: B9HH61_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s02020g PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.480e-68
Identity = 127/193 (65.80%), Postives = 149/193 (77.20%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+KT DPYL+LVED  LQA+ VESD   I  GS++D  AALKSL  + +DD HLKET+IS FMTKF KLSEDELS IK+QLL+ FSPDD Y LG PL     RPCSPLA+M+FQ+F+E MP AA+TD     E NGSQSGRK S+S++ LD+LS NELL+S LETARQV S  VS+ P+PYDQMKSQCEA V
Sbjct:  708 LTEKTADPYLELVEDIKLQAIYVESDEGKIAYGSEDDGVAALKSLSCVEVDDSHLKETLISRFMTKFVKLSEDELSGIKQQLLQDFSPDDVYPLGGPLFMDTPRPCSPLARMEFQAFEEIMPAAALTDDETFTELNGSQSGRKTSISVHTLDILSVNELLESVLETARQVASSQVSSTPVPYDQMKSQCEALV 900          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: F6HYR4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00270 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 5.831e-68
Identity = 126/192 (65.62%), Postives = 148/192 (77.08%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIK--DGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+  +DPYL+LV+D  L+AVC+ES+ K   GS++DE +ALKSL AI LDD  LKETVISHFMTK+ KLSEDELS +KKQLL+GFSPDDAY  G PL     RPCSPLAQ++FQ F E +   A+TD     E +GSQS RK SLSIN LD+LS N+LL+S LETARQV SF VS+ PIPYDQMKSQCEA V
Sbjct:  759 LTETIVDPYLELVKDIRLKAVCIESNEKVVYGSQQDELSALKSLSAIELDDRQLKETVISHFMTKYGKLSEDELSGMKKQLLQGFSPDDAYPFGAPLFMETPRPCSPLAQIEFQPFREAIAPDALTDEEAFPEIDGSQSDRKTSLSINTLDILSVNQLLESVLETARQVASFPVSSTPIPYDQMKSQCEALV 950          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: W9R4P8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024737 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 7.866e-68
Identity = 130/193 (67.36%), Postives = 146/193 (75.65%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+KT+DP+L+LV+DA L+AV VES    I  GS+EDE  ALKSL AI LDD  LKETVISHFMTKF KLSEDELSSIKKQ  +GFSPDDAY LG PL     RPCSPLA M F   DE MP AA+ D     E +GSQS RK S+SIN LD+LS N+LL+S LETARQV SF VS+ PIPYDQMK+QCEA V
Sbjct: 1163 LTNKTVDPHLQLVDDACLRAVFVESGKGKIFYGSQEDEVGALKSLSAIKLDDQQLKETVISHFMTKFAKLSEDELSSIKKQFSQGFSPDDAYLLGAPLFMETPRPCSPLAHMDFPDIDEMMPTAALIDEEAFPEPSGSQSDRKTSISINTLDILSVNQLLESVLETARQVASFPVSSTPIPYDQMKNQCEALV 1355          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: M5XXU3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000810mg PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.562e-66
Identity = 128/194 (65.98%), Postives = 144/194 (74.23%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVES---DIKDGS-KEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            L DK +DP L+LV++A LQAV +ES    I  GS +EDE A   SL A+ LDD  LKETVISHFMTKF KLSEDELSSIKK+LL+GFSPDDA+ LG PL     RPCSPLAQ+ F  FDE MP  ++TD     E +GSQS RK SLSIN LD+LS N+LLDS LETARQV SF VS  PIPYDQMKSQCEA V
Sbjct:  714 LEDKMVDPCLQLVDNAWLQAVSIESYKEKISSGSLQEDEVATFNSLSAVELDDQLLKETVISHFMTKFAKLSEDELSSIKKELLQGFSPDDAFPLGAPLFMETPRPCSPLAQIDFPDFDEVMPPGSLTDDEAFPEPSGSQSDRKTSLSINTLDILSVNQLLDSVLETARQVASFPVSTTPIPYDQMKSQCEALV 907          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067DWG2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.750e-64
Identity = 125/193 (64.77%), Postives = 143/193 (74.09%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            +T+KT+DPYL+LVED  LQAVC +S  +K   GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL     RPCSPLA+M+FQ+FDE MPLAA+TD     E NGSQS RK SLS+               LETARQV S+ V +  +PYDQMKSQCEA V
Sbjct:  718 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSV---------------LETARQVASYPVVSTTVPYDQMKSQCEALV 895          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: K7M3J3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.362e-63
Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+ T+DP+L+LV+D  LQAVC+ES+ I  GS+EDE AA KSL  + LDD  LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY  G PL     RPCSPLAQ++F +FDE+ +           E +GSQS  K SLS N  DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V
Sbjct:  532 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 722          
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: I1M554_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 5.001e-63
Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3
Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LT+ T+DP+L+LV+D  LQAVC+ES+ I  GS+EDE AA KSL  + LDD  LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY  G PL     RPCSPLAQ++F +FDE+ +           E +GSQS  K SLS N  DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V
Sbjct:  684 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 874          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061EJ56_THECC3.599e-7773.58ARM repeat superfamily protein isoform 5 OS=Theobr... [more]
A0A067DWW6_CITSI1.151e-7570.47Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067E8U2_CITSI1.424e-7570.47Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9HH61_POPTR2.480e-6865.80Uncharacterized protein OS=Populus trichocarpa GN=... [more]
F6HYR4_VITVI5.831e-6865.63Putative uncharacterized protein OS=Vitis vinifera... [more]
W9R4P8_9ROSA7.866e-6867.36Uncharacterized protein OS=Morus notabilis GN=L484... [more]
M5XXU3_PRUPE3.562e-6665.98Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067DWG2_CITSI1.750e-6464.77Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
K7M3J3_SOYBN1.362e-6362.30Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1M554_SOYBN5.001e-6362.30Uncharacterized protein OS=Glycine max PE=4 SV=2[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12444UNCHARACTERIZEDcoord: 1..181
NoneNo IPR availablePANTHERPTHR12444:SF2ARM REPEAT SUPERFAMILY PROTEINcoord: 1..181

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008440 ID=g.arboreum_cottongen_reftransV1_0008440; Name=g.arboreum_cottongen_reftransV1_0008440; organism=Gossypium arboreum; type=contig; length=547bp
CCCATTACACTAGCTTCACACTGACTCTTCATCTGGTCATAAGGAATAGG
TGCTGCAGAAACCGAAAAGCTTACAACTTGCCGGGCAGTTTCCAGAGCCG
AATCCAATAGCTCATTGGCACTTAAGACATCTAGTTCATTTATGGATAAT
GATGCTTTGCGACCTGACTGACTTCCATTGGCTTCATCTGTTACAGCAGC
TAGAGGCATCTCATCAAATGACTGAAACTTCATCTGCGCAAGAGGAGAAC
ATGGTCTTGACAACGGAACACCTAATGAATATGCATCATCGGGTGAAAAG
CCCTCAAGAAGCTGTTTCTTTATACTTGATAATTCATCCTCTGATAATTT
CTTAAATTTGGTCATGAAATGGGATATGACAGTCTCCTTCAAATGGAGGT
CATCAAGCGTTATTGCCAATAGGGATTTTAATGCAGCATCTTCATCTTCT
TTTGATCCATCTTTTATATCAGATTCCACACATACAGCCTGAAGTCCAGC
ATCTTCAACTAATTTGAGATAAGGATCAATCGTTTTATCTGTCAGAG
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