g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A061EJ56_THECC (ARM repeat superfamily protein isoform 5 OS=Theobroma cacao GN=TCM_020051 PE=4 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 3.599e-77 Identity = 142/193 (73.58%), Postives = 156/193 (80.83%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LTDKT+DPYLKLVED LQAVCV+SD+ GSKED+ AA KSLL+I D HLKETVISH MT+F+KLSEDELSSI+KQLL+GFSPDDAY LG PL RPCSPLAQM FQ+F+E +PLAA+TDE ANGSQS RK SLSI+ LDVLS NELLDS LETARQV SFSVS PIPYDQMKSQCEA V Sbjct: 706 LTDKTVDPYLKLVEDIQLQAVCVKSDVDGVAYGSKEDDLAASKSLLSIEPDP-HLKETVISHLMTRFEKLSEDELSSIQKQLLQGFSPDDAYPLGAPLFMETPRPCSPLAQMGFQAFEEILPLAAMTDEEAFPEANGSQSDRKTSLSISTLDVLSVNELLDSVLETARQVASFSVSPTPIPYDQMKSQCEALV 897
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067DWW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 1.151e-75 Identity = 136/193 (70.47%), Postives = 155/193 (80.31%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 +T+KT+DPYL+LVED LQAVC +S +K GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL RPCSPLA+M+FQ+FDE MPLAA+TD E NGSQS RK SLS+N LD+LS NELLDS LETARQV S+ V + +PYDQMKSQCEA V Sbjct: 697 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALV 889
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067E8U2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 1.424e-75 Identity = 136/193 (70.47%), Postives = 155/193 (80.31%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 +T+KT+DPYL+LVED LQAVC +S +K GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL RPCSPLA+M+FQ+FDE MPLAA+TD E NGSQS RK SLS+N LD+LS NELLDS LETARQV S+ V + +PYDQMKSQCEA V Sbjct: 718 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTTVPYDQMKSQCEALV 910
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: B9HH61_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s02020g PE=4 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 2.480e-68 Identity = 127/193 (65.80%), Postives = 149/193 (77.20%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+KT DPYL+LVED LQA+ VESD I GS++D AALKSL + +DD HLKET+IS FMTKF KLSEDELS IK+QLL+ FSPDD Y LG PL RPCSPLA+M+FQ+F+E MP AA+TD E NGSQSGRK S+S++ LD+LS NELL+S LETARQV S VS+ P+PYDQMKSQCEA V Sbjct: 708 LTEKTADPYLELVEDIKLQAIYVESDEGKIAYGSEDDGVAALKSLSCVEVDDSHLKETLISRFMTKFVKLSEDELSGIKQQLLQDFSPDDVYPLGGPLFMDTPRPCSPLARMEFQAFEEIMPAAALTDDETFTELNGSQSGRKTSISVHTLDILSVNELLESVLETARQVASSQVSSTPVPYDQMKSQCEALV 900
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: F6HYR4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00270 PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 5.831e-68 Identity = 126/192 (65.62%), Postives = 148/192 (77.08%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESDIK--DGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+ +DPYL+LV+D L+AVC+ES+ K GS++DE +ALKSL AI LDD LKETVISHFMTK+ KLSEDELS +KKQLL+GFSPDDAY G PL RPCSPLAQ++FQ F E + A+TD E +GSQS RK SLSIN LD+LS N+LL+S LETARQV SF VS+ PIPYDQMKSQCEA V Sbjct: 759 LTETIVDPYLELVKDIRLKAVCIESNEKVVYGSQQDELSALKSLSAIELDDRQLKETVISHFMTKYGKLSEDELSGMKKQLLQGFSPDDAYPFGAPLFMETPRPCSPLAQIEFQPFREAIAPDALTDEEAFPEIDGSQSDRKTSLSINTLDILSVNQLLESVLETARQVASFPVSSTPIPYDQMKSQCEALV 950
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: W9R4P8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024737 PE=4 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 7.866e-68 Identity = 130/193 (67.36%), Postives = 146/193 (75.65%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD---IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+KT+DP+L+LV+DA L+AV VES I GS+EDE ALKSL AI LDD LKETVISHFMTKF KLSEDELSSIKKQ +GFSPDDAY LG PL RPCSPLA M F DE MP AA+ D E +GSQS RK S+SIN LD+LS N+LL+S LETARQV SF VS+ PIPYDQMK+QCEA V Sbjct: 1163 LTNKTVDPHLQLVDDACLRAVFVESGKGKIFYGSQEDEVGALKSLSAIKLDDQQLKETVISHFMTKFAKLSEDELSSIKKQFSQGFSPDDAYLLGAPLFMETPRPCSPLAHMDFPDIDEMMPTAALIDEEAFPEPSGSQSDRKTSISINTLDILSVNQLLESVLETARQVASFPVSSTPIPYDQMKNQCEALV 1355
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: M5XXU3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000810mg PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.562e-66 Identity = 128/194 (65.98%), Postives = 144/194 (74.23%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVES---DIKDGS-KEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 L DK +DP L+LV++A LQAV +ES I GS +EDE A SL A+ LDD LKETVISHFMTKF KLSEDELSSIKK+LL+GFSPDDA+ LG PL RPCSPLAQ+ F FDE MP ++TD E +GSQS RK SLSIN LD+LS N+LLDS LETARQV SF VS PIPYDQMKSQCEA V Sbjct: 714 LEDKMVDPCLQLVDNAWLQAVSIESYKEKISSGSLQEDEVATFNSLSAVELDDQLLKETVISHFMTKFAKLSEDELSSIKKELLQGFSPDDAFPLGAPLFMETPRPCSPLAQIDFPDFDEVMPPGSLTDDEAFPEPSGSQSDRKTSLSINTLDILSVNQLLDSVLETARQVASFPVSTTPIPYDQMKSQCEALV 907
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A067DWG2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001882mg PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.750e-64 Identity = 125/193 (64.77%), Postives = 143/193 (74.09%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 +T+KT+DPYL+LVED LQAVC +S +K GS+EDEDAA+KSL AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL RPCSPLA+M+FQ+FDE MPLAA+TD E NGSQS RK SLS+ LETARQV S+ V + +PYDQMKSQCEA V Sbjct: 718 VTEKTVDPYLELVEDIRLQAVCADSCKVKTAYGSQEDEDAAMKSLAAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSV---------------LETARQVASYPVVSTTVPYDQMKSQCEALV 895
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: K7M3J3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.362e-63 Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+ T+DP+L+LV+D LQAVC+ES+ I GS+EDE AA KSL + LDD LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY G PL RPCSPLAQ++F +FDE+ + E +GSQS K SLS N DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V Sbjct: 532 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 722
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: I1M554_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 219.55 bits (558), Expect = 5.001e-63 Identity = 119/191 (62.30%), Postives = 142/191 (74.35%), Query Frame = -3 Query: 6 LTDKTIDPYLKLVEDAGLQAVCVESD-IKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDEMPLA------AVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545 LT+ T+DP+L+LV+D LQAVC+ES+ I GS+EDE AA KSL + LDD LKET+IS+FMTKF KLSEDELSSIK QLL+GFSPDDAY G PL RPCSPLAQ++F +FDE+ + E +GSQS K SLS N DVL+ N+LLDS LETARQV SFS S+ P+PYDQMK+QCEA V Sbjct: 684 LTEPTVDPFLELVDDIRLQAVCIESEKIIYGSQEDEVAAAKSLSDVELDDKQLKETIISYFMTKFSKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRPCSPLAQIEFPNFDEIMVPDDLMEEETGPEHSGSQSDHKTSLSTNYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALV 874 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008440 ID=g.arboreum_cottongen_reftransV1_0008440; Name=g.arboreum_cottongen_reftransV1_0008440; organism=Gossypium arboreum; type=contig; length=547bpback to top |