g.arboreum_cottongen_reftransV1_0000741, g.arboreum_cottongen_reftransV1_0000741 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A059ADU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01361 PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.106e-20 Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKT 292 L LEKNH+C ++ILRI FTWNL ++ ++ + + GT ++G +D D LQ+W RL+SL + RHAKTQ +ICC+A+C+++ L + ++ D +KT Sbjct: 1745 LSLEKNHKCTHYILRIFFTWNLQQYNQVGCQMNIGTKFMGVMDGDFTLQIWGRLLSLYNIVRHAKTQGTIICCMAVCIKRLAGLLAN-SIFDSTEKT 1840
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: Q9M3D3_ARATH (Putative uncharacterized protein T26I12.40 OS=Arabidopsis thaliana GN=T26I12.40 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.868e-19 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLF 256 L+ EKNH+C +ILRI+F WNLL F++ ++S +YVG+L+ DSV LW RL SL + TR AKT+ L+CCLAICV+ LF Sbjct: 1651 LDKEKNHKCENYILRILFQWNLLMFKKSCNKESVEGIYVGSLNYDSVFHLWGRLTSLYESTRRAKTRGTLMCCLAICVKHLTGLF 1735
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: F4JFA0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At3g55160 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.090e-19 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLF 256 L+ EKNH+C +ILRI+F WNLL F++ ++S +YVG+L+ DSV LW RL SL + TR AKT+ L+CCLAICV+ LF Sbjct: 1682 LDKEKNHKCENYILRILFQWNLLMFKKSCNKESVEGIYVGSLNYDSVFHLWGRLTSLYESTRRAKTRGTLMCCLAICVKHLTGLF 1766
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: V4KRJ3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003503mg PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.257e-18 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFS 259 L+ EKNH+C +ILRI WNLL FQ+ S + ++YVG+L+ DSV LW +L SL + TR AKT+ L+CCLAICV+ LFS Sbjct: 1696 LDKEKNHKCENYILRIFCQWNLLMFQKSSNGEPLESIYVGSLNYDSVFHLWGKLTSLYESTRRAKTRGTLMCCLAICVKHLTGLFS 1781
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A022R3A4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000040mg PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.037e-18 Identity = 36/77 (46.75%), Postives = 63/77 (81.82%), Query Frame = 2 Query: 11 EKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQ 241 EK+H+C++++L++ +TWN L+FQE ++ S+ T YV +D +SV QLW++L+SL ++TRHAKT++ LICC+ +C+++ Sbjct: 1744 EKHHKCIHYLLKVFYTWNSLEFQEDNQPSSE-TTYVCNMDRNSVFQLWNKLVSLFEITRHAKTRQTLICCMGVCIKR 1819 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000741 ID=g.arboreum_cottongen_reftransV1_0000741; Name=g.arboreum_cottongen_reftransV1_0000741; organism=Gossypium arboreum; type=contig; length=312bpback to top |