g.arboreum_cottongen_reftransV1_0000741, g.arboreum_cottongen_reftransV1_0000741 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000741
Unique Nameg.arboreum_cottongen_reftransV1_0000741
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0000741:1..312 .
Chr11:10855224..10855535 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A059ADU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01361 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.106e-20
Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKT 292
            L LEKNH+C ++ILRI FTWNL ++ ++  + + GT ++G +D D  LQ+W RL+SL  + RHAKTQ  +ICC+A+C+++   L +  ++ D  +KT
Sbjct: 1745 LSLEKNHKCTHYILRIFFTWNLQQYNQVGCQMNIGTKFMGVMDGDFTLQIWGRLLSLYNIVRHAKTQGTIICCMAVCIKRLAGLLAN-SIFDSTEKT 1840          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: Q9M3D3_ARATH (Putative uncharacterized protein T26I12.40 OS=Arabidopsis thaliana GN=T26I12.40 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.868e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLF 256
            L+ EKNH+C  +ILRI+F WNLL F++   ++S   +YVG+L+ DSV  LW RL SL + TR AKT+  L+CCLAICV+    LF
Sbjct: 1651 LDKEKNHKCENYILRILFQWNLLMFKKSCNKESVEGIYVGSLNYDSVFHLWGRLTSLYESTRRAKTRGTLMCCLAICVKHLTGLF 1735          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: F4JFA0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At3g55160 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.090e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLF 256
            L+ EKNH+C  +ILRI+F WNLL F++   ++S   +YVG+L+ DSV  LW RL SL + TR AKT+  L+CCLAICV+    LF
Sbjct: 1682 LDKEKNHKCENYILRILFQWNLLMFKKSCNKESVEGIYVGSLNYDSVFHLWGRLTSLYESTRRAKTRGTLMCCLAICVKHLTGLF 1766          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: V4KRJ3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003503mg PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.257e-18
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFS 259
            L+ EKNH+C  +ILRI   WNLL FQ+ S  +   ++YVG+L+ DSV  LW +L SL + TR AKT+  L+CCLAICV+    LFS
Sbjct: 1696 LDKEKNHKCENYILRIFCQWNLLMFQKSSNGEPLESIYVGSLNYDSVFHLWGKLTSLYESTRRAKTRGTLMCCLAICVKHLTGLFS 1781          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A022R3A4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000040mg PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.037e-18
Identity = 36/77 (46.75%), Postives = 63/77 (81.82%), Query Frame = 2
Query:   11 EKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQ 241
            EK+H+C++++L++ +TWN L+FQE ++  S+ T YV  +D +SV QLW++L+SL ++TRHAKT++ LICC+ +C+++
Sbjct: 1744 EKHHKCIHYLLKVFYTWNSLEFQEDNQPSSE-TTYVCNMDRNSVFQLWNKLVSLFEITRHAKTRQTLICCMGVCIKR 1819          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059ADU8_EUCGR1.106e-2044.33Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
Q9M3D3_ARATH2.868e-1952.94Putative uncharacterized protein T26I12.40 OS=Arab... [more]
F4JFA0_ARATH3.090e-1952.94Uncharacterized protein OS=Arabidopsis thaliana GN... [more]
V4KRJ3_EUTSA1.257e-1852.33Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A022R3A4_ERYGU2.037e-1846.75Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000741 ID=g.arboreum_cottongen_reftransV1_0000741; Name=g.arboreum_cottongen_reftransV1_0000741; organism=Gossypium arboreum; type=contig; length=312bp
CTTGGAACTGGAGAAGAATCATCGGTGTATGTATCACATTCTGAGGATTA
TTTTCACTTGGAACTTGCTGAAGTTTCAGGAATTAAGTGAAGAAAAGAGT
GATGGAACCCTTTATGTTGGTGCCTTGGATTGTGATTCTGTATTACAGCT
TTGGGATAGGCTGATATCCTTGCTCAAGCTCACTCGACATGCTAAAACAC
AAGAAATACTCATTTGTTGTCTGGCAATATGCGTAAGGCAATTTATAAGG
CTGTTTAGTTGTTTTACTCTTACTGATAAGGGGCAGAAGACTGCTGGATA
TAATGAATCAGG
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