g.arboreum_cottongen_reftransV1_0000741, g.arboreum_cottongen_reftransV1_0000741 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A5C157_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020616 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.379e-28 Identity = 49/98 (50.00%), Postives = 75/98 (76.53%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295 L +E +H+C +ILRI+FTWNLL+FQ+LS++K T+ +G ++CDSV Q W++L+SL +L RH KT+E LICC+ ICV++F LF+ + L++ +K A Sbjct: 1707 LTVENHHKCTNYILRILFTWNLLQFQKLSDQKCPETIXIGGMNCDSVFQFWBKLVSLYELARHTKTREALICCMGICVKRFAGLFTSYVLSEVEKKNA 1804
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A067LL73_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09744 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.361e-28 Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTL 271 L+ EKNHRCM +ILRI++ WNLL+F++L +EK T Y+G LD DS+ Q WD+LISL KL RH KT+E++ICC+AICV+Q+ + + L Sbjct: 857 LDSEKNHRCMNYILRILYVWNLLQFKKLGDEKCADTSYIGTLDFDSMFQFWDKLISLYKLARHTKTREMIICCMAICVKQYASSLTSYVL 946
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: F6H5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00500 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.309e-27 Identity = 49/98 (50.00%), Postives = 75/98 (76.53%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295 L +E +H+C +ILRI+FTWNLL+FQ+LS++K T+ +G ++CDSV Q W++L+SL +L RH KT+E LICC+ ICV++F LF+ + L++ +K A Sbjct: 1474 LTVENHHKCTNYILRILFTWNLLQFQKLSDQKCPETINIGGMNCDSVFQFWNKLVSLYELARHTKTREALICCMGICVKRFAGLFTSYVLSEVEKKNA 1571
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: W9SQA7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027170 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.068e-27 Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQK 289 L+ EKNHRC Y+ILRI+FTWN L+F++ ++S +Y+G +DCDSV +WD+ ISL K+ RHAKT+E L+CC+ +CV++ RLF+ + L QK Sbjct: 1743 LDSEKNHRCSYYILRILFTWNSLQFRKAENKRSTEAIYIGGMDCDSVSLIWDKFISLYKIARHAKTRETLVCCMGVCVKRIARLFAGYILIYVEQK 1838
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: B9RUP4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0855190 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.313e-26 Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295 L E+NHRCM +ILRI+ WNL++F++L EK T YVG L DS+ Q WD+L+SL KLTRH KT+E LICC+AICVRQ+ L + + L + + ++ Sbjct: 1739 LNSEENHRCMNYILRILSFWNLVQFKKLDGEKCTNTSYVGNLGFDSMCQFWDKLVSLYKLTRHTKTRETLICCMAICVRQYANLLTSYVLANVDESSS 1836
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: B9H3W7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s13360g PE=4 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 2.588e-24 Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQF 244 L+ EK HRC Y+ILRI++TWNLL+FQ+ + S YVG LD DS Q WD+L+SL +TRH KT+E LICC+AICV++F Sbjct: 1691 LDSEKYHRCKYYILRILYTWNLLQFQKPGNQNSADITYVGNLDNDSTFQFWDKLLSLYNITRHKKTRETLICCMAICVKKF 1771
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: K7MW25_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 4.721e-24 Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDK 280 L EKNH+C Y+ILRI+ WNLL+F++ S +K GT YVG +D DSV Q W+ ++SL K TRHAKTQE L+ CL +C ++ LF+ L+++ Sbjct: 1735 LASEKNHKCKYNILRILVAWNLLQFEKASHDKCSGTNYVGEMDFDSVFQFWNEIVSLYKQTRHAKTQETLVRCLGVCTKRITMLFASSILSNE 1827
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A072U7B4_MEDTR (Death receptor interacting protein, putative OS=Medicago truncatula GN=MTR_6g011760 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.315e-22 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQK 289 L EKNH+C Y+ILRI+ WNLL+F++ S EK T YVG +D DSV Q W+ L+SL TRHAKT+E L+ CL +C ++ LF+ ++KG + Sbjct: 1748 LASEKNHKCKYYILRILVAWNLLQFEKASHEKCTDTSYVGEMDFDSVSQFWNDLVSLYNQTRHAKTRETLVYCLGVCTKRITMLFASSFPSNKGME 1843
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: V7C2W9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G028000g PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.307e-21 Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTD 277 L EK+HRC +IL+II WNLL+F++ S++K GT YVG +D D+ LQ W+ L+SL K RHAKTQ+ L+ CL +C+++ LF+ L + Sbjct: 1729 LASEKHHRCTNYILKIIVAWNLLQFEKASQDKCTGTSYVGEMDFDAALQFWNELVSLYKQARHAKTQQSLVRCLGVCIKRITMLFASSILPN 1820
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0A0LG21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G827200 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.792e-21 Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 2 LELEKNHRCMYHILRIIFTWNLLKFQELSE-EKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTD 277 L LEKN+RC+Y+IL+ +F WN+ +FQ+ E ++ +Y+G +DC SVLQ WD+LISL KLTRHAKT+E I C+ C+++ +S ++D Sbjct: 1589 LSLEKNYRCLYYILKNLFAWNMSQFQKFGNGECTEDVVYIGKMDCGSVLQFWDKLISLYKLTRHAKTRENTIRCMGTCIKRLAVQYSACIVSD 1681 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000741 ID=g.arboreum_cottongen_reftransV1_0000741; Name=g.arboreum_cottongen_reftransV1_0000741; organism=Gossypium arboreum; type=contig; length=312bpback to top |