g.arboreum_cottongen_reftransV1_0000741, g.arboreum_cottongen_reftransV1_0000741 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000741
Unique Nameg.arboreum_cottongen_reftransV1_0000741
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0000741:1..312 .
Chr11:10855224..10855535 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A5C157_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020616 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.379e-28
Identity = 49/98 (50.00%), Postives = 75/98 (76.53%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295
            L +E +H+C  +ILRI+FTWNLL+FQ+LS++K   T+ +G ++CDSV Q W++L+SL +L RH KT+E LICC+ ICV++F  LF+ + L++  +K A
Sbjct: 1707 LTVENHHKCTNYILRILFTWNLLQFQKLSDQKCPETIXIGGMNCDSVFQFWBKLVSLYELARHTKTREALICCMGICVKRFAGLFTSYVLSEVEKKNA 1804          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A067LL73_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09744 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.361e-28
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTL 271
            L+ EKNHRCM +ILRI++ WNLL+F++L +EK   T Y+G LD DS+ Q WD+LISL KL RH KT+E++ICC+AICV+Q+    + + L
Sbjct:  857 LDSEKNHRCMNYILRILYVWNLLQFKKLGDEKCADTSYIGTLDFDSMFQFWDKLISLYKLARHTKTREMIICCMAICVKQYASSLTSYVL 946          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: F6H5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00500 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.309e-27
Identity = 49/98 (50.00%), Postives = 75/98 (76.53%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295
            L +E +H+C  +ILRI+FTWNLL+FQ+LS++K   T+ +G ++CDSV Q W++L+SL +L RH KT+E LICC+ ICV++F  LF+ + L++  +K A
Sbjct: 1474 LTVENHHKCTNYILRILFTWNLLQFQKLSDQKCPETINIGGMNCDSVFQFWNKLVSLYELARHTKTREALICCMGICVKRFAGLFTSYVLSEVEKKNA 1571          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: W9SQA7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027170 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.068e-27
Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQK 289
            L+ EKNHRC Y+ILRI+FTWN L+F++   ++S   +Y+G +DCDSV  +WD+ ISL K+ RHAKT+E L+CC+ +CV++  RLF+ + L    QK
Sbjct: 1743 LDSEKNHRCSYYILRILFTWNSLQFRKAENKRSTEAIYIGGMDCDSVSLIWDKFISLYKIARHAKTRETLVCCMGVCVKRIARLFAGYILIYVEQK 1838          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: B9RUP4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0855190 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.313e-26
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTA 295
            L  E+NHRCM +ILRI+  WNL++F++L  EK   T YVG L  DS+ Q WD+L+SL KLTRH KT+E LICC+AICVRQ+  L + + L +  + ++
Sbjct: 1739 LNSEENHRCMNYILRILSFWNLVQFKKLDGEKCTNTSYVGNLGFDSMCQFWDKLVSLYKLTRHTKTRETLICCMAICVRQYANLLTSYVLANVDESSS 1836          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: B9H3W7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s13360g PE=4 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.588e-24
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQF 244
            L+ EK HRC Y+ILRI++TWNLL+FQ+   + S    YVG LD DS  Q WD+L+SL  +TRH KT+E LICC+AICV++F
Sbjct: 1691 LDSEKYHRCKYYILRILYTWNLLQFQKPGNQNSADITYVGNLDNDSTFQFWDKLLSLYNITRHKKTRETLICCMAICVKKF 1771          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: K7MW25_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.721e-24
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDK 280
            L  EKNH+C Y+ILRI+  WNLL+F++ S +K  GT YVG +D DSV Q W+ ++SL K TRHAKTQE L+ CL +C ++   LF+   L+++
Sbjct: 1735 LASEKNHKCKYNILRILVAWNLLQFEKASHDKCSGTNYVGEMDFDSVFQFWNEIVSLYKQTRHAKTQETLVRCLGVCTKRITMLFASSILSNE 1827          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A072U7B4_MEDTR (Death receptor interacting protein, putative OS=Medicago truncatula GN=MTR_6g011760 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.315e-22
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQK 289
            L  EKNH+C Y+ILRI+  WNLL+F++ S EK   T YVG +D DSV Q W+ L+SL   TRHAKT+E L+ CL +C ++   LF+    ++KG +
Sbjct: 1748 LASEKNHKCKYYILRILVAWNLLQFEKASHEKCTDTSYVGEMDFDSVSQFWNDLVSLYNQTRHAKTRETLVYCLGVCTKRITMLFASSFPSNKGME 1843          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: V7C2W9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G028000g PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.307e-21
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTD 277
            L  EK+HRC  +IL+II  WNLL+F++ S++K  GT YVG +D D+ LQ W+ L+SL K  RHAKTQ+ L+ CL +C+++   LF+   L +
Sbjct: 1729 LASEKHHRCTNYILKIIVAWNLLQFEKASQDKCTGTSYVGEMDFDAALQFWNELVSLYKQARHAKTQQSLVRCLGVCIKRITMLFASSILPN 1820          
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0A0LG21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G827200 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.792e-21
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSE-EKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTD 277
            L LEKN+RC+Y+IL+ +F WN+ +FQ+    E ++  +Y+G +DC SVLQ WD+LISL KLTRHAKT+E  I C+  C+++    +S   ++D
Sbjct: 1589 LSLEKNYRCLYYILKNLFAWNMSQFQKFGNGECTEDVVYIGKMDCGSVLQFWDKLISLYKLTRHAKTRENTIRCMGTCIKRLAVQYSACIVSD 1681          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A5C157_VITVI4.379e-2850.00Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067LL73_JATCU5.361e-2855.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
F6H5R8_VITVI1.309e-2750.00Putative uncharacterized protein OS=Vitis vinifera... [more]
W9SQA7_9ROSA2.068e-2751.04Uncharacterized protein OS=Morus notabilis GN=L484... [more]
B9RUP4_RICCO3.313e-2652.04Putative uncharacterized protein OS=Ricinus commun... [more]
B9H3W7_POPTR2.588e-2458.02Uncharacterized protein OS=Populus trichocarpa GN=... [more]
K7MW25_SOYBN4.721e-2450.54Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A072U7B4_MEDTR1.315e-2248.96Death receptor interacting protein, putative OS=Me... [more]
V7C2W9_PHAVU1.307e-2147.83Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0A0LG21_CUCSA6.792e-2147.31Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000741 ID=g.arboreum_cottongen_reftransV1_0000741; Name=g.arboreum_cottongen_reftransV1_0000741; organism=Gossypium arboreum; type=contig; length=312bp
CTTGGAACTGGAGAAGAATCATCGGTGTATGTATCACATTCTGAGGATTA
TTTTCACTTGGAACTTGCTGAAGTTTCAGGAATTAAGTGAAGAAAAGAGT
GATGGAACCCTTTATGTTGGTGCCTTGGATTGTGATTCTGTATTACAGCT
TTGGGATAGGCTGATATCCTTGCTCAAGCTCACTCGACATGCTAAAACAC
AAGAAATACTCATTTGTTGTCTGGCAATATGCGTAAGGCAATTTATAAGG
CTGTTTAGTTGTTTTACTCTTACTGATAAGGGGCAGAAGACTGCTGGATA
TAATGAATCAGG
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