g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A067FXR7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045563mg PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.662e-50 Identity = 77/129 (59.69%), Postives = 101/129 (78.29%), Query Frame = -3 Query: 2 DKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 388 + V VVLLGWLGA+ KHL+RYVEW N RGI+A+TF+V+ KELL FD+G +E+R+++L NE+ WV EE+DG++RC IFH FSNTGWF+ GS+L S Q RE L +KI+G+I+DSG A +PKVWA Sbjct: 1 ETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSGGAGAFDPKVWAG 129
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A078JCL0_BRANA (BnaCnng43110D protein OS=Brassica napus GN=BnaCnng43110D PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 5.774e-49 Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG K VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++LL D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF R+ L EKI+G IIDSG ADPL+ K+WAA Sbjct: 119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D3E3B4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 5.774e-49 Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG K VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++LL D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF R+ L EKI+G IIDSG ADPL+ K+WAA Sbjct: 119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: F6GWV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02000 PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 9.280e-49 Identity = 76/130 (58.46%), Postives = 96/130 (73.85%), Query Frame = -3 Query: 2 RDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 391 R V VVLLGWLGAK KHL+RYV+ RGIHAVTF+V V+E+LW D+G R+E+R++E+ EL W+ E E DGRER +FH FSNTGWF YG++LD Q R L EKI+G ++DSG +NP+VWAA Sbjct: 130 RGPAVTVVLLGWLGAKPKHLRRYVDLYTSRGIHAVTFVVPVREVLWIDLGRRVEKRIAEMTQELVSWLSETENDGRERHLLFHTFSNTGWFAYGAILDHLQGRPDLMEKIKGCVVDSGGDPEINPQVWAA 259
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V4MDR2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022713mg PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.100e-48 Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG K VVLLGWLGAK KHL+RYVEW N RGI+AVTF VDV++LL D+G RLE+R++E GNEL WV E+E+DGRE+C +FH+FSNTGW +YG+LL+SF R+ L EKI+ IIDSG ADPL+ K+WAA Sbjct: 117 FGGNGKETTVVLLGWLGAKAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIAEFGNELVNWVSEKEDDGREKCLVFHSFSNTGWLVYGALLESFVGRQELIEKIKACIIDSGGADPLDTKIWAA 249
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7 Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3 Query: 29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376 +V+LLGW G K K+L +Y + RG + + +V E L L Q++ EL L + +E+E +FH FSN G LY +L+ Q R + ++ G I DS D Sbjct: 37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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