g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019949
Unique Nameg.arboreum_cottongen_reftransV1_0019949
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length402
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019949:12..402 .
Chr9:56149163..56149749 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A067FXR7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045563mg PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.662e-50
Identity = 77/129 (59.69%), Postives = 101/129 (78.29%), Query Frame = -3
Query:    2 DKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 388
            +  V VVLLGWLGA+ KHL+RYVEW N RGI+A+TF+V+ KELL FD+G  +E+R+++L NE+  WV  EE+DG++RC IFH FSNTGWF+ GS+L S Q RE L +KI+G+I+DSG A   +PKVWA 
Sbjct:    1 ETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSGGAGAFDPKVWAG 129          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A078JCL0_BRANA (BnaCnng43110D protein OS=Brassica napus GN=BnaCnng43110D PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.774e-49
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG   K   VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++LL  D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF  R+ L EKI+G IIDSG ADPL+ K+WAA
Sbjct:  119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D3E3B4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.774e-49
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG   K   VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++LL  D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF  R+ L EKI+G IIDSG ADPL+ K+WAA
Sbjct:  119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: F6GWV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02000 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.280e-49
Identity = 76/130 (58.46%), Postives = 96/130 (73.85%), Query Frame = -3
Query:    2 RDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 391
            R   V VVLLGWLGAK KHL+RYV+    RGIHAVTF+V V+E+LW D+G R+E+R++E+  EL  W+ E E DGRER  +FH FSNTGWF YG++LD  Q R  L EKI+G ++DSG    +NP+VWAA
Sbjct:  130 RGPAVTVVLLGWLGAKPKHLRRYVDLYTSRGIHAVTFVVPVREVLWIDLGRRVEKRIAEMTQELVSWLSETENDGRERHLLFHTFSNTGWFAYGAILDHLQGRPDLMEKIKGCVVDSGGDPEINPQVWAA 259          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V4MDR2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022713mg PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.100e-48
Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG   K   VVLLGWLGAK KHL+RYVEW N RGI+AVTF VDV++LL  D+G RLE+R++E GNEL  WV E+E+DGRE+C +FH+FSNTGW +YG+LL+SF  R+ L EKI+  IIDSG ADPL+ K+WAA
Sbjct:  117 FGGNGKETTVVLLGWLGAKAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIAEFGNELVNWVSEKEDDGREKCLVFHSFSNTGWLVYGALLESFVGRQELIEKIKACIIDSGGADPLDTKIWAA 249          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3
Query:   29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376
            +V+LLGW G K K+L +Y    + RG   + +     +V   E L       L Q++ EL   L  + +E+E        +FH FSN G  LY  +L+  Q R   + ++ G I DS   D
Sbjct:   37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067FXR7_CITSI3.662e-5059.69Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A0A078JCL0_BRANA5.774e-4965.41BnaCnng43110D protein OS=Brassica napus GN=BnaCnng... [more]
A0A0D3E3B4_BRAOL5.774e-4965.41Uncharacterized protein OS=Brassica oleracea var. ... [more]
F6GWV4_VITVI9.280e-4958.46Putative uncharacterized protein OS=Vitis vinifera... [more]
V4MDR2_EUTSA1.100e-4864.66Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMM53_HUMAN5.272e-731.40Transmembrane protein 53 OS=Homo sapiens GN=TMEM53... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008547Protein of unknown function DUF829, TMEM53PFAMPF05705DUF829coord: 1..112
e-value: 3.8E-23
score: 82.5
IPR008547Protein of unknown function DUF829, TMEM53PANTHERPTHR12265UNCHARACTERIZEDcoord: 1..121
NoneNo IPR availablePANTHERPTHR12265:SF11SUBFAMILY NOT NAMEDcoord: 1..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bp
CGGCTGCCCAGACCTTAGGATTTAAAGGGTCAGCTGCTCCTGAATCAATA
ATTACTCCTCTTATCTTCTCTTTCAATCCCTCTCTTCTCTGAAAGCTGTC
AAGAAGTGAACCATATAGGAACCAGCCAGTGTTGCTAAAAGCATGGAAAA
TGAAGCACCTTTCACGACCATCTTCCTCTTCTTCCATAACCCACTTGGCC
AACTCATTTCCCAATTCAGATACACGCTGCTCAAGCCTTGCACCAATATC
AAACCATAGCAATTCCTTAACATCTACTAAAAAAGTAACCGCGTGGATTC
CTCTTAAATTGTTCCATTCCACATATCGCTTTAAATGCTTGGTTTTAGCC
CCAAGCCATCCCAAAAGAACCACTATTACGACCTTGTCCCTGCATCCAAA
AG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008547DUF829_TMEM53