g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A078GUY0_BRANA (BnaA09g09570D protein OS=Brassica napus GN=BnaA09g09570D PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.343e-57 Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG K VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++L+ D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF R+ L EKI+G IIDSG ADPL+ K+WAA Sbjct: 119 FGGDGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLVRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A059ASI9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02424 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.472e-54 Identity = 81/126 (64.29%), Postives = 101/126 (80.16%), Query Frame = -3 Query: 2 VIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 379 V VVLLGWLGA+ KHL+RYVEW N +G HAVTF+V V+E+L D+G +E R+ EL NEL+ WV E EEDGRERC +FH FSNTGWF+YG++L+ + R+ L EKI+G I+DSGAA+P NPKVWAA Sbjct: 179 VTVVLLGWLGARRKHLRRYVEWYNSKGFHAVTFVVGVREMLSLDLGRGVEARIDELANELSAWVSEREEDGRERCLLFHTFSNTGWFVYGAILERMRGRQDLIEKIQGCIVDSGAAEPFNPKVWAA 304
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: G7KEY4_MEDTR (Transmembrane-like protein OS=Medicago truncatula GN=MTR_5g020710 PE=4 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 6.230e-54 Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = -3 Query: 2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREG-LKEKIRGVIIDSGAADPLNPKVWAA 397 G +++VV VVLLGWLGAKT+HLKRY EW N RG HAVTF+VDVKE+L FD+G LE+++ ELA WV EE+DGRERC IFH FSNTGWF+YGS+L F + EKI+ I+DSG A+P NP+VWAA Sbjct: 115 GNKNRVVTVVLLGWLGAKTRHLKRYAEWYNSRGFHAVTFVVDVKEILGFDLGRVLEKKIEIFAEELASWVSCEEKDGRERCLIFHTFSNTGWFVYGSILARFMDSHNVVMEKIKACIVDSGGAEPFNPQVWAA 247
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: W9RLR0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014602 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 4.329e-53 Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = -3 Query: 2 FGCRD-KVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG D + V VVLLGWLGAKTKHLKRYVEW N RG HAVTF+ DV E+LWFD+G R+E+RVS L EL W+ DGRERC +FH FSNTGWF+YG++L+ Q R+ L EKI+G + DSGAA+P NP+VWAA Sbjct: 109 FGIGDHREVTVVLLGWLGAKTKHLKRYVEWYNSRGFHAVTFVSDVGEILWFDLGRRVEKRVSALAGELISWLSVGGSDGRERCLVFHTFSNTGWFVYGAILEIVQGRQDLLEKIKGCVFDSGAAEPFNPQVWAA 242
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: I1J8T4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 7.099e-53 Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = -3 Query: 2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397 G +D+V VVLLGWLGA+TKHLKRYVEW N RGI+A+TF+VDVKELL FD+G LE R+S L + L WV EE DGRERC +FH FSNTGWF+YG +L E L EKI+G I+DSG +P NPKVWAA Sbjct: 91 GGKDRVATVVLLGWLGARTKHLKRYVEWYNSRGINALTFVVDVKELLRFDLGHVLETRISLLADHLVSWVSREEHDGRERCLVFHTFSNTGWFVYGYILARMLGSEELMEKIKGCIVDSGGGEPFNPKVWAA 222
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: I1LHU3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.525e-52 Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = -3 Query: 2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397 G +D+V VVLLGWLGA+TKHLKRYVEW N RGI+A+TF+VD+KELL FD+G LE R+S L + L WV EE DGRERC +FH FSNTGWF+YG +L E L EKI+G I+DSG +P NP+VWAA Sbjct: 101 GGKDRVATVVLLGWLGARTKHLKRYVEWYNSRGINALTFVVDIKELLRFDLGHVLETRISLLADHLVSWVSREEHDGRERCLVFHTFSNTGWFVYGYILARMLGSEELMEKIKGCIVDSGGGEPFNPQVWAA 232
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: B9HF24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13080g PE=4 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 1.679e-52 Identity = 80/129 (62.02%), Postives = 97/129 (75.19%), Query Frame = -3 Query: 14 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPK 400 F + V VVLLGWLGA+ KHL++YVEW N RGIHAVTF+VD++ELL FD G R+E+R++EL NEL WV E E+DGRERC FH FSNTGW +YG +L Q REGL EKI+G + DSGA + NPK Sbjct: 123 FSDKKPVATVVLLGWLGAREKHLRKYVEWYNSRGIHAVTFVVDMRELLCFDFGKRVEKRITELANELVSWVSEREDDGRERCLFFHTFSNTGWLVYGYILGVMQEREGLIEKIKGCVSDSGAGNQYNPK 251
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0A0KGH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502770 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.320e-51 Identity = 77/124 (62.10%), Postives = 98/124 (79.03%), Query Frame = -3 Query: 2 VVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 373 VVLLGWLGAKTKHL+RYVEW N RGI+A+TF+VD +E LWF + ++EQR+S+L EL W+ E EE ++R IFH FSNTGWF+YG++L+ Q R+ L EKI+G I+DSG DPLNP+VWAA Sbjct: 144 VVLLGWLGAKTKHLRRYVEWYNARGINALTFIVDPREFLWFALSRKVEQRISDLAVELISWLSEGEESDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAA 267
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V7CI49_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G032300g PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.587e-50 Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 +G +D V VVLLGWLGA+TKHLKRYVEW N RG HAVTF+VDVKELL D+G LE R+S L + L W+ +E+D R+RC +FH FSNTGWF+YG +L E L KI+G I+DSG +P NP+VWA+ Sbjct: 112 YGAKDCVPTVVLLGWLGARTKHLKRYVEWYNSRGFHAVTFVVDVKELLRIDLGHVLETRISLLADHLVSWLSLKEQDERDRCLVFHTFSNTGWFVYGYMLARMLGSEDLMMKIKGCIVDSGGGEPFNPQVWAS 244
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V4SP74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025809mg PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.306e-50 Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = -3 Query: 5 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWA 400 F R+ V VVLLGWLGA+ KHL+RYVEW N RGI+A+TF+V+ KELL FD+G +E+R+++L NE+ WV EE+DG++RC IFH FSNTGWF+ GS+L S Q RE L +KI+G+I+DSG A +PKVWA Sbjct: 106 FDHRETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSGGAGAFDPKVWA 237
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7 Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3 Query: 29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376 +V+LLGW G K K+L +Y + RG + + +V E L L Q++ EL L + +E+E +FH FSN G LY +L+ Q R + ++ G I DS D Sbjct: 37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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