g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019949
Unique Nameg.arboreum_cottongen_reftransV1_0019949
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length402
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019949:12..402 .
Chr9:56149163..56149749 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A078GUY0_BRANA (BnaA09g09570D protein OS=Brassica napus GN=BnaA09g09570D PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.343e-57
Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG   K   VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++L+  D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF  R+ L EKI+G IIDSG ADPL+ K+WAA
Sbjct:  119 FGGDGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLVRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A059ASI9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02424 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.472e-54
Identity = 81/126 (64.29%), Postives = 101/126 (80.16%), Query Frame = -3
Query:    2 VIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 379
            V VVLLGWLGA+ KHL+RYVEW N +G HAVTF+V V+E+L  D+G  +E R+ EL NEL+ WV E EEDGRERC +FH FSNTGWF+YG++L+  + R+ L EKI+G I+DSGAA+P NPKVWAA
Sbjct:  179 VTVVLLGWLGARRKHLRRYVEWYNSKGFHAVTFVVGVREMLSLDLGRGVEARIDELANELSAWVSEREEDGRERCLLFHTFSNTGWFVYGAILERMRGRQDLIEKIQGCIVDSGAAEPFNPKVWAA 304          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: G7KEY4_MEDTR (Transmembrane-like protein OS=Medicago truncatula GN=MTR_5g020710 PE=4 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.230e-54
Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = -3
Query:    2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREG-LKEKIRGVIIDSGAADPLNPKVWAA 397
            G +++VV VVLLGWLGAKT+HLKRY EW N RG HAVTF+VDVKE+L FD+G  LE+++     ELA WV  EE+DGRERC IFH FSNTGWF+YGS+L  F      + EKI+  I+DSG A+P NP+VWAA
Sbjct:  115 GNKNRVVTVVLLGWLGAKTRHLKRYAEWYNSRGFHAVTFVVDVKEILGFDLGRVLEKKIEIFAEELASWVSCEEKDGRERCLIFHTFSNTGWFVYGSILARFMDSHNVVMEKIKACIVDSGGAEPFNPQVWAA 247          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: W9RLR0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014602 PE=4 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.329e-53
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = -3
Query:    2 FGCRD-KVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG  D + V VVLLGWLGAKTKHLKRYVEW N RG HAVTF+ DV E+LWFD+G R+E+RVS L  EL  W+     DGRERC +FH FSNTGWF+YG++L+  Q R+ L EKI+G + DSGAA+P NP+VWAA
Sbjct:  109 FGIGDHREVTVVLLGWLGAKTKHLKRYVEWYNSRGFHAVTFVSDVGEILWFDLGRRVEKRVSALAGELISWLSVGGSDGRERCLVFHTFSNTGWFVYGAILEIVQGRQDLLEKIKGCVFDSGAAEPFNPQVWAA 242          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: I1J8T4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.099e-53
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = -3
Query:    2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397
            G +D+V  VVLLGWLGA+TKHLKRYVEW N RGI+A+TF+VDVKELL FD+G  LE R+S L + L  WV  EE DGRERC +FH FSNTGWF+YG +L      E L EKI+G I+DSG  +P NPKVWAA
Sbjct:   91 GGKDRVATVVLLGWLGARTKHLKRYVEWYNSRGINALTFVVDVKELLRFDLGHVLETRISLLADHLVSWVSREEHDGRERCLVFHTFSNTGWFVYGYILARMLGSEELMEKIKGCIVDSGGGEPFNPKVWAA 222          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: I1LHU3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.525e-52
Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = -3
Query:    2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397
            G +D+V  VVLLGWLGA+TKHLKRYVEW N RGI+A+TF+VD+KELL FD+G  LE R+S L + L  WV  EE DGRERC +FH FSNTGWF+YG +L      E L EKI+G I+DSG  +P NP+VWAA
Sbjct:  101 GGKDRVATVVLLGWLGARTKHLKRYVEWYNSRGINALTFVVDIKELLRFDLGHVLETRISLLADHLVSWVSREEHDGRERCLVFHTFSNTGWFVYGYILARMLGSEELMEKIKGCIVDSGGGEPFNPQVWAA 232          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: B9HF24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13080g PE=4 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.679e-52
Identity = 80/129 (62.02%), Postives = 97/129 (75.19%), Query Frame = -3
Query:   14 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPK 400
            F  +  V  VVLLGWLGA+ KHL++YVEW N RGIHAVTF+VD++ELL FD G R+E+R++EL NEL  WV E E+DGRERC  FH FSNTGW +YG +L   Q REGL EKI+G + DSGA +  NPK
Sbjct:  123 FSDKKPVATVVLLGWLGAREKHLRKYVEWYNSRGIHAVTFVVDMRELLCFDFGKRVEKRITELANELVSWVSEREDDGRERCLFFHTFSNTGWLVYGYILGVMQEREGLIEKIKGCVSDSGAGNQYNPK 251          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0A0KGH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502770 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.320e-51
Identity = 77/124 (62.10%), Postives = 98/124 (79.03%), Query Frame = -3
Query:    2 VVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 373
            VVLLGWLGAKTKHL+RYVEW N RGI+A+TF+VD +E LWF +  ++EQR+S+L  EL  W+ E EE  ++R  IFH FSNTGWF+YG++L+  Q R+ L EKI+G I+DSG  DPLNP+VWAA
Sbjct:  144 VVLLGWLGAKTKHLRRYVEWYNARGINALTFIVDPREFLWFALSRKVEQRISDLAVELISWLSEGEESDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAA 267          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V7CI49_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G032300g PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.587e-50
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            +G +D V  VVLLGWLGA+TKHLKRYVEW N RG HAVTF+VDVKELL  D+G  LE R+S L + L  W+  +E+D R+RC +FH FSNTGWF+YG +L      E L  KI+G I+DSG  +P NP+VWA+
Sbjct:  112 YGAKDCVPTVVLLGWLGARTKHLKRYVEWYNSRGFHAVTFVVDVKELLRIDLGHVLETRISLLADHLVSWLSLKEQDERDRCLVFHTFSNTGWFVYGYMLARMLGSEDLMMKIKGCIVDSGGGEPFNPQVWAS 244          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: V4SP74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025809mg PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.306e-50
Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = -3
Query:    5 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWA 400
            F  R+  V VVLLGWLGA+ KHL+RYVEW N RGI+A+TF+V+ KELL FD+G  +E+R+++L NE+  WV  EE+DG++RC IFH FSNTGWF+ GS+L S Q RE L +KI+G+I+DSG A   +PKVWA
Sbjct:  106 FDHRETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSGGAGAFDPKVWA 237          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3
Query:   29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376
            +V+LLGW G K K+L +Y    + RG   + +     +V   E L       L Q++ EL   L  + +E+E        +FH FSN G  LY  +L+  Q R   + ++ G I DS   D
Sbjct:   37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078GUY0_BRANA1.343e-5764.66BnaA09g09570D protein OS=Brassica napus GN=BnaA09g... [more]
A0A059ASI9_EUCGR3.472e-5464.29Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
G7KEY4_MEDTR6.230e-5462.41Transmembrane-like protein OS=Medicago truncatula ... [more]
W9RLR0_9ROSA4.329e-5364.18Uncharacterized protein OS=Morus notabilis GN=L484... [more]
I1J8T4_SOYBN7.099e-5364.39Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LHU3_SOYBN1.525e-5262.88Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9HF24_POPTR1.679e-5262.02Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0A0KGH8_CUCSA7.320e-5162.10Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
V7CI49_PHAVU1.587e-5058.65Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
V4SP74_9ROSI2.306e-5059.85Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMM53_HUMAN5.272e-731.40Transmembrane protein 53 OS=Homo sapiens GN=TMEM53... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008547Protein of unknown function DUF829, TMEM53PFAMPF05705DUF829coord: 1..112
e-value: 3.8E-23
score: 82.5
IPR008547Protein of unknown function DUF829, TMEM53PANTHERPTHR12265UNCHARACTERIZEDcoord: 1..121
NoneNo IPR availablePANTHERPTHR12265:SF11SUBFAMILY NOT NAMEDcoord: 1..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bp
CGGCTGCCCAGACCTTAGGATTTAAAGGGTCAGCTGCTCCTGAATCAATA
ATTACTCCTCTTATCTTCTCTTTCAATCCCTCTCTTCTCTGAAAGCTGTC
AAGAAGTGAACCATATAGGAACCAGCCAGTGTTGCTAAAAGCATGGAAAA
TGAAGCACCTTTCACGACCATCTTCCTCTTCTTCCATAACCCACTTGGCC
AACTCATTTCCCAATTCAGATACACGCTGCTCAAGCCTTGCACCAATATC
AAACCATAGCAATTCCTTAACATCTACTAAAAAAGTAACCGCGTGGATTC
CTCTTAAATTGTTCCATTCCACATATCGCTTTAAATGCTTGGTTTTAGCC
CCAAGCCATCCCAAAAGAACCACTATTACGACCTTGTCCCTGCATCCAAA
AG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008547DUF829_TMEM53