g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9GNX9_POPTR (RNA-binding protein 47 OS=Populus trichocarpa GN=POPTR_0002s12960g PE=4 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 7.050e-43 Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPV KGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP +KQ RAD+ + W GAYYGG VYDGYGYA PPPH+P Y AAYG YP YG++QQQV+ Sbjct: 319 FSQYGEIVSVKIPVSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQHRADFSSPWNGAYYGGQVYDGYGYALPPPHDPSTYAAAYGAYPMYGNHQQQVS 429
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: E3NYS6_9FABA (RNA binding protein (Fragment) OS=Arachis diogoi PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 5.640e-42 Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY-GNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVK+PVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFR D+ GN W G YYG VYDGYGYA PPPH+P IY AAY YP YG +QQQVN Sbjct: 31 FSQYGEIVSVKVPVGKGCGFVQFAIRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 142
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A067L2Q6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04314 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.652e-40 Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIP+GKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRAD+GNQW GAYYGG VYDGYGYA PPPH+P + AAYG YP YGS+QQQV+ Sbjct: 324 FSQYGEIVSVKIPLGKGCGFVQFANRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNQWSGAYYGGQVYDGYGYALPPPHDPSMYAAAAAAYGAYPVYGSHQQQVS 437
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022QBR2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006186mg PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.451e-39 Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXX-XXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FS+YGEIVSVKIPVGKGCGFVQF RN+AEEALQ+L+G IGKQTVRLSWG +P NKQ R DY +QW GA Y G +DGYGYA PPPH+P +Y AAYG YPFYG++QQQV+ Sbjct: 343 FSEYGEIVSVKIPVGKGCGFVQFVNRNDAEEALQQLSGKTIGKQTVRLSWGHSPANKQSRVDYAHQWTGAAYYGGPYFDGYGYALPPPHDPNMYAAAYGAYPFYGTHQQQVS 454
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K7KSX6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.079e-39 Identity = 88/115 (76.52%), Postives = 93/115 (80.87%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRN----NAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGF R+ NAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+ Sbjct: 296 FSQYGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 410
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 6.348e-35 Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FS++GEIVSVKIPVGKGCGFVQF R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R YGNQW YYGG Y+GYGY P P +P +Y AA YP YG +QQQV+ Sbjct: 326 FSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 434
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.245e-34 Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 F+++GEIVSVKIPVGKGCGFVQF R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R YGNQW YYGG Y+GYGY P P +P +Y AA YP YG +QQQV+ Sbjct: 324 FNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 432
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.673e-28 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYT--AAYGVYP-FYGSYQQQVN 343 F+Q+GE+VSVKIP GKGCGFVQF+ R++A+EA+QKL+G +IGKQ VRLSWGR+P NKQ R D G+QW G Y G Y GYGY + G+Y AAYG YG++QQ V+ Sbjct: 315 FNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.785e-27 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = -2 Query: 143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343 FSQ+GE+VSVKIPVGKGCGFVQFA R +AE+A++ LNGT+IGK TVRLSWGR+P NKQ+R D G QW Sbjct: 341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQW 406
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.168e-27 Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = -2 Query: 143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343 FS +GE+VSVKIPVGKGCGFVQFA R +AEEA+ LNGT+IGK TVRLSWGR+P NKQ+R+D GNQW Sbjct: 347 FSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQW 412
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.618e-21 Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = -2 Query: 20 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQ 343 FS YGE+V VKI GK CGFVQF R +AE+AL LNGT +G Q++RLSWGR+P++KQ GGAYYG PP +P +Y YG YP Y +YQQ Sbjct: 302 FSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY---YGNYPGYANYQQ 406
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.299e-20 Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = -2 Query: 170 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ 343 FSQYGEIV VKIP GK CGFVQF+ ++ AEEAL+ LNG +G TVRLSWGR+P+NKQ Sbjct: 281 FSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.456e-19 Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 158 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRAD 343 F Q+GE+V VKIP GK CGFVQ+A R AE+AL LNGT +G Q++RLSWGR+P+NKQ + D Sbjct: 298 FGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.971e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -2 Query: 155 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY 343 F Q+GE++ VKIP GK CGFVQ+A + +AE AL LNGT +G Q++RLSWGR+P + +A + Sbjct: 280 FGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.457e-14 Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = -2 Query: 182 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNP 343 FSQ GE++ VKIP KG G+VQF R +AEEA+Q++ G +IG+Q VR+SW +NP Sbjct: 257 FSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 14
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bpback to top |