g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9GNX9_POPTR (RNA-binding protein 47 OS=Populus trichocarpa GN=POPTR_0002s12960g PE=4 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 7.050e-43 Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPV KGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP +KQ RAD+ + W GAYYGG VYDGYGYA PPPH+P Y AAYG YP YG++QQQV+ Sbjct: 319 FSQYGEIVSVKIPVSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQHRADFSSPWNGAYYGGQVYDGYGYALPPPHDPSTYAAAYGAYPMYGNHQQQVS 429
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: E3NYS6_9FABA (RNA binding protein (Fragment) OS=Arachis diogoi PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 5.640e-42 Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY-GNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVK+PVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFR D+ GN W G YYG VYDGYGYA PPPH+P IY AAY YP YG +QQQVN Sbjct: 31 FSQYGEIVSVKVPVGKGCGFVQFAIRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 142
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A067L2Q6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04314 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.652e-40 Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIP+GKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRAD+GNQW GAYYGG VYDGYGYA PPPH+P + AAYG YP YGS+QQQV+ Sbjct: 324 FSQYGEIVSVKIPLGKGCGFVQFANRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNQWSGAYYGGQVYDGYGYALPPPHDPSMYAAAAAAYGAYPVYGSHQQQVS 437
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022QBR2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006186mg PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.451e-39 Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXX-XXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FS+YGEIVSVKIPVGKGCGFVQF RN+AEEALQ+L+G IGKQTVRLSWG +P NKQ R DY +QW GA Y G +DGYGYA PPPH+P +Y AAYG YPFYG++QQQV+ Sbjct: 343 FSEYGEIVSVKIPVGKGCGFVQFVNRNDAEEALQQLSGKTIGKQTVRLSWGHSPANKQSRVDYAHQWTGAAYYGGPYFDGYGYALPPPHDPNMYAAAYGAYPFYGTHQQQVS 454
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K7KSX6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.079e-39 Identity = 88/115 (76.52%), Postives = 93/115 (80.87%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRN----NAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGF R+ NAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+ Sbjct: 296 FSQYGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 410
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.725e-13 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -2 Query: 185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343 F +GEIV VKIP GKGCGFVQF R +AE A+ +L G +G +RLSWGRN Sbjct: 323 FQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 3.593e-11 Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = -2 Query: 185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343 F +G I+++KIP GKGCGFVQ++ ++ AE+A+ + G ++G +RL+WG N Sbjct: 317 FQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 5.138e-10 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2 Query: 188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343 F +G I++V+IP GK CGFV+F R +AE ++Q L G ++G +RLSWGR Sbjct: 380 FKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-10 Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = -2 Query: 188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343 F +G IV VKIPVGK CGFVQ+ R +AE A+ + G I VRLSWGR Sbjct: 333 FQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 14
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bpback to top |