g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011612
Unique Nameg.arboreum_cottongen_reftransV1_0011612
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length344
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0011612:1..344 .
Chr10:16710784..16711485 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9GNX9_POPTR (RNA-binding protein 47 OS=Populus trichocarpa GN=POPTR_0002s12960g PE=4 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 7.050e-43
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPV KGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP +KQ RAD+ + W GAYYGG VYDGYGYA PPPH+P  Y AAYG YP YG++QQQV+
Sbjct:  319 FSQYGEIVSVKIPVSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQHRADFSSPWNGAYYGGQVYDGYGYALPPPHDPSTYAAAYGAYPMYGNHQQQVS 429          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: E3NYS6_9FABA (RNA binding protein (Fragment) OS=Arachis diogoi PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.640e-42
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY-GNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVK+PVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFR D+ GN W G YYG  VYDGYGYA PPPH+P IY AAY  YP YG +QQQVN
Sbjct:   31 FSQYGEIVSVKVPVGKGCGFVQFAIRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 142          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A067L2Q6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04314 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.652e-40
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIP+GKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRAD+GNQW GAYYGG VYDGYGYA PPPH+P +     AAYG YP YGS+QQQV+
Sbjct:  324 FSQYGEIVSVKIPLGKGCGFVQFANRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNQWSGAYYGGQVYDGYGYALPPPHDPSMYAAAAAAYGAYPVYGSHQQQVS 437          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022QBR2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006186mg PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.451e-39
Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXX-XXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FS+YGEIVSVKIPVGKGCGFVQF  RN+AEEALQ+L+G  IGKQTVRLSWG +P NKQ R DY +QW GA Y G   +DGYGYA PPPH+P +Y AAYG YPFYG++QQQV+
Sbjct:  343 FSEYGEIVSVKIPVGKGCGFVQFVNRNDAEEALQQLSGKTIGKQTVRLSWGHSPANKQSRVDYAHQWTGAAYYGGPYFDGYGYALPPPHDPNMYAAAYGAYPFYGTHQQQVS 454          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K7KSX6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.079e-39
Identity = 88/115 (76.52%), Postives = 93/115 (80.87%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRN----NAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGF     R+    NAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  296 FSQYGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 410          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.725e-13
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -2
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +GEIV VKIP GKGCGFVQF  R +AE A+ +L G  +G   +RLSWGRN
Sbjct:  323 FQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.593e-11
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = -2
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +G I+++KIP GKGCGFVQ++ ++ AE+A+  + G ++G   +RL+WG N
Sbjct:  317 FQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 5.138e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G I++V+IP GK CGFV+F  R +AE ++Q L G ++G   +RLSWGR
Sbjct:  380 FKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-10
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G IV VKIPVGK CGFVQ+  R +AE A+  + G  I    VRLSWGR
Sbjct:  333 FQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9GNX9_POPTR7.050e-4380.18RNA-binding protein 47 OS=Populus trichocarpa GN=P... [more]
E3NYS6_9FABA5.640e-4281.25RNA binding protein (Fragment) OS=Arachis diogoi P... [more]
A0A067L2Q6_JATCU3.652e-4081.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A022QBR2_ERYGU1.451e-3972.32Uncharacterized protein OS=Erythranthe guttata GN=... [more]
K7KSX6_SOYBN2.079e-3976.52Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YG41_SCHPO1.725e-1360.38Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO3.593e-1145.28RNA-binding post-transcriptional regulator csx1 OS... [more]
NGR1_YEAST5.138e-1050.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
NAM8_YEAST5.355e-1055.77Protein NAM8 OS=Saccharomyces cerevisiae (strain A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR24012:SF352SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bp
TATTATCTCAGTTTACTTGTTGCTGGTAACTGCCATAGAATGGATAAACC
CCATACGCAGCCGTATATATACCCGGGTTATGAGGTGGTGGAAAAGCATA
TCCATAGCCATCATACACCGCTCCTCCATAGTAAGCTCCACCCCATTGGT
TACCATAATCTGCTCTAAACTGCTTATTTGTAGGATTGCGTCCCCAAGAG
AGTCTCACTGTTTGCTTGCCAATCATAGTCCCATTCAACTTTTGCAATGC
CTCCTCAGCATTGTTCCTCCCGGCGAATTGTACAAACCCGCATCCTTTTC
CAACAGGTATTTTAACAGAGACTATTTCACCATATTGAGAGAAA
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