g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011612
Unique Nameg.arboreum_cottongen_reftransV1_0011612
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length344
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0011612:1..344 .
Chr10:16710784..16711485 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1MXR5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.794e-45
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  303 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 413
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7ASP6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G063200g PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.997e-45
Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFR D+G+ W GAYYGG VYDGYGYA PPPH+P IY AAYG YP YG +QQQV+
Sbjct:  310 FSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS 420
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K4BV15_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g079310.2 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.790e-45
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG  YDGYGYAFP PH+PG+Y AAYG YP YG++QQQV+
Sbjct:  341 FAQYGEIVSVKIPVGKGCGFVQFAKRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQPRSDFGNQWTGPYYGGHFYDGYGYAFPQPHDPGMYAAAYGAYPVYGTHQQQVS 451
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022PX95_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a018561mg PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.003e-44
Identity = 85/111 (76.58%), Postives = 93/111 (83.78%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEI+SVKIPVGKGCGFVQFA RN AEEALQ+L GT IGKQTVRLSWGRNP NKQ R D GNQW GAYYG   +DGYGYA  PPH+P +Y AAYG YP YG++QQQV+
Sbjct:   15 FSQYGEIISVKIPVGKGCGFVQFANRNEAEEALQQLTGTTIGKQTVRLSWGRNPANKQSRGDLGNQWTGAYYGPPSFDGYGYAVGPPHDPSMYAAAYGAYPMYGTHQQQVS 125
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9R7H3_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1591740 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.278e-44
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNK-QFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NK Q R+D+GNQWGGAYYGG +YDGYGYA PPPH+P +Y A YG YP YGS+QQQV+
Sbjct:  332 FSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQLRSDFGNQWGGAYYGGQIYDGYGYALPPPHDPSMYAAPYGAYPVYGSHQQQVS 443
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1M8J4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.176e-44
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA  P H+P IY AAYG YP YG +QQQV+
Sbjct:  315 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 425
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FJ83_THECC (RNA-binding protein 47C isoform 1 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.618e-43
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+     A YG YP YGS+QQQV+
Sbjct:  322 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 435
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FBZ6_THECC (RNA-binding protein 47C isoform 3 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.673e-43
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+     A YG YP YGS+QQQV+
Sbjct:  323 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 436
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A5BPW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008697 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.284e-43
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = -2 
Query:   17 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ-----FRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQ 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ      RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQ
Sbjct:  196 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQANSLFMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQ 309
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0A0LP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360590 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.763e-43
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHN-PGIYTAAYGVYPFYGSYQQQVN 343
            FSQ+GEIVSVKIPVGKGCGF+QFA R NAEEALQKLNGT+IGKQTVRLSWGR+PTNKQ+R DYGN W GAYYGG VY GYGYA P P++ P +Y AAYG YP YG++QQQVN
Sbjct:  318 FSQHGEIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPTNKQYRGDYGNHWSGAYYGGQVYGGYGYALPLPYDPPTMYAAAYGAYPMYGTHQQQVN 429
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.348e-35
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FS++GEIVSVKIPVGKGCGFVQF  R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R  YGNQW   YYGG  Y+GYGY  P P +P +Y AA   YP YG +QQQV+
Sbjct:  326 FSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 434
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.245e-34
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+++GEIVSVKIPVGKGCGFVQF  R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R  YGNQW   YYGG  Y+GYGY  P P +P +Y AA   YP YG +QQQV+
Sbjct:  324 FNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 432
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.673e-28
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYT--AAYGVYP-FYGSYQQQVN 343
            F+Q+GE+VSVKIP GKGCGFVQF+ R++A+EA+QKL+G +IGKQ VRLSWGR+P NKQ R D G+QW G Y G   Y GYGY      + G+Y   AAYG     YG++QQ V+
Sbjct:  315 FNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.785e-27
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = -2 
Query:  143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343
            FSQ+GE+VSVKIPVGKGCGFVQFA R +AE+A++ LNGT+IGK TVRLSWGR+P NKQ+R D G QW
Sbjct:  341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQW 406
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.168e-27
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = -2 
Query:  143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343
            FS +GE+VSVKIPVGKGCGFVQFA R +AEEA+  LNGT+IGK TVRLSWGR+P NKQ+R+D GNQW
Sbjct:  347 FSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQW 412
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.618e-21
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = -2 
Query:   20 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQ 343
            FS YGE+V VKI  GK CGFVQF  R +AE+AL  LNGT +G Q++RLSWGR+P++KQ         GGAYYG           PP  +P +Y   YG YP Y +YQQ
Sbjct:  302 FSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY---YGNYPGYANYQQ 406
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.299e-20
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = -2 
Query:  170 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ 343
            FSQYGEIV VKIP GK CGFVQF+ ++ AEEAL+ LNG  +G  TVRLSWGR+P+NKQ
Sbjct:  281 FSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.456e-19
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -2 
Query:  158 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRAD 343
            F Q+GE+V VKIP GK CGFVQ+A R  AE+AL  LNGT +G Q++RLSWGR+P+NKQ + D
Sbjct:  298 FGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.971e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -2 
Query:  155 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY 343
            F Q+GE++ VKIP GK CGFVQ+A + +AE AL  LNGT +G Q++RLSWGR+P  +  +A +
Sbjct:  280 FGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.457e-14
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = -2 
Query:  182 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNP 343
            FSQ GE++ VKIP  KG G+VQF  R +AEEA+Q++ G +IG+Q VR+SW +NP
Sbjct:  257 FSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MXR5_SOYBN7.794e-4581.08Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
V7ASP6_PHAVU7.997e-4582.88Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
K4BV15_SOLLC9.790e-4581.08Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022PX95_ERYGU2.003e-4476.58Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
B9R7H3_RICCO2.278e-4482.14Nuclear acid binding protein, putative OS=Ricinus ... [more]
I1M8J4_SOYBN5.176e-4481.08Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A061FJ83_THECC3.618e-4385.09RNA-binding protein 47C isoform 1 OS=Theobroma cac... [more]
A0A061FBZ6_THECC3.673e-4385.09RNA-binding protein 47C isoform 3 OS=Theobroma cac... [more]
A5BPW5_VITVI6.284e-4380.70Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LP64_CUCSA6.763e-4378.57Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
R47CP_ARATH6.348e-3571.17Polyadenylate-binding protein RBP47C' OS=Arabidops... [more]
RB47C_ARATH2.245e-3470.27Polyadenylate-binding protein RBP47C OS=Arabidopsi... [more]
RBP47_NICPL1.673e-2857.89Polyadenylate-binding protein RBP47 OS=Nicotiana p... [more]
RB47B_ARATH3.785e-2774.63Polyadenylate-binding protein RBP47B OS=Arabidopsi... [more]
RB47A_ARATH5.168e-2776.12Polyadenylate-binding protein RBP47A OS=Arabidopsi... [more]
RBP45_NICPL6.618e-2150.93Polyadenylate-binding protein RBP45 OS=Nicotiana p... [more]
RB45B_ARATH2.299e-2070.69Polyadenylate-binding protein RBP45B OS=Arabidopsi... [more]
RP45C_ARATH1.456e-1962.90Polyadenylate-binding protein RBP45C OS=Arabidopsi... [more]
RB45A_ARATH3.971e-1653.97Polyadenylate-binding protein RBP45A OS=Arabidopsi... [more]
R47BP_ARATH4.457e-1457.41Polyadenylate-binding protein RBP47B' OS=Arabidops... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR24012:SF352SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bp
TATTATCTCAGTTTACTTGTTGCTGGTAACTGCCATAGAATGGATAAACC
CCATACGCAGCCGTATATATACCCGGGTTATGAGGTGGTGGAAAAGCATA
TCCATAGCCATCATACACCGCTCCTCCATAGTAAGCTCCACCCCATTGGT
TACCATAATCTGCTCTAAACTGCTTATTTGTAGGATTGCGTCCCCAAGAG
AGTCTCACTGTTTGCTTGCCAATCATAGTCCCATTCAACTTTTGCAATGC
CTCCTCAGCATTGTTCCTCCCGGCGAATTGTACAAACCCGCATCCTTTTC
CAACAGGTATTTTAACAGAGACTATTTCACCATATTGAGAGAAA
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