g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1MXR5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 7.794e-45 Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG +YDGYGYA PP H+P IY AAYG YP YG +QQQV+ Sbjct: 303 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 413
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7ASP6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G063200g PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 7.997e-45 Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFR D+G+ W GAYYGG VYDGYGYA PPPH+P IY AAYG YP YG +QQQV+ Sbjct: 310 FSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS 420
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K4BV15_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g079310.2 PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 9.790e-45 Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG YDGYGYAFP PH+PG+Y AAYG YP YG++QQQV+ Sbjct: 341 FAQYGEIVSVKIPVGKGCGFVQFAKRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQPRSDFGNQWTGPYYGGHFYDGYGYAFPQPHDPGMYAAAYGAYPVYGTHQQQVS 451
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022PX95_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a018561mg PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.003e-44 Identity = 85/111 (76.58%), Postives = 93/111 (83.78%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEI+SVKIPVGKGCGFVQFA RN AEEALQ+L GT IGKQTVRLSWGRNP NKQ R D GNQW GAYYG +DGYGYA PPH+P +Y AAYG YP YG++QQQV+ Sbjct: 15 FSQYGEIISVKIPVGKGCGFVQFANRNEAEEALQQLTGTTIGKQTVRLSWGRNPANKQSRGDLGNQWTGAYYGPPSFDGYGYAVGPPHDPSMYAAAYGAYPMYGTHQQQVS 125
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9R7H3_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1591740 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.278e-44 Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNK-QFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NK Q R+D+GNQWGGAYYGG +YDGYGYA PPPH+P +Y A YG YP YGS+QQQV+ Sbjct: 332 FSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQLRSDFGNQWGGAYYGGQIYDGYGYALPPPHDPSMYAAPYGAYPVYGSHQQQVS 443
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1M8J4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 5.176e-44 Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG +YDGYGYA P H+P IY AAYG YP YG +QQQV+ Sbjct: 315 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 425
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FJ83_THECC (RNA-binding protein 47C isoform 1 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.618e-43 Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+ A YG YP YGS+QQQV+ Sbjct: 322 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 435
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FBZ6_THECC (RNA-binding protein 47C isoform 3 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.673e-43 Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+ A YG YP YGS+QQQV+ Sbjct: 323 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 436
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A5BPW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008697 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.284e-43 Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = -2 Query: 17 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ-----FRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQ 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQ Sbjct: 196 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQANSLFMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQ 309
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0A0LP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360590 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 6.763e-43 Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHN-PGIYTAAYGVYPFYGSYQQQVN 343 FSQ+GEIVSVKIPVGKGCGF+QFA R NAEEALQKLNGT+IGKQTVRLSWGR+PTNKQ+R DYGN W GAYYGG VY GYGYA P P++ P +Y AAYG YP YG++QQQVN Sbjct: 318 FSQHGEIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPTNKQYRGDYGNHWSGAYYGGQVYGGYGYALPLPYDPPTMYAAAYGAYPMYGTHQQQVN 429
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.725e-13 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -2 Query: 185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343 F +GEIV VKIP GKGCGFVQF R +AE A+ +L G +G +RLSWGRN Sbjct: 323 FQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 3.593e-11 Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = -2 Query: 185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343 F +G I+++KIP GKGCGFVQ++ ++ AE+A+ + G ++G +RL+WG N Sbjct: 317 FQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 5.138e-10 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2 Query: 188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343 F +G I++V+IP GK CGFV+F R +AE ++Q L G ++G +RLSWGR Sbjct: 380 FKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-10 Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = -2 Query: 188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343 F +G IV VKIPVGK CGFVQ+ R +AE A+ + G I VRLSWGR Sbjct: 333 FQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 14
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Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bpback to top |