g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011612
Unique Nameg.arboreum_cottongen_reftransV1_0011612
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length344
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0011612:1..344 .
Chr10:16710784..16711485 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1MXR5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.794e-45
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  303 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 413          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7ASP6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G063200g PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.997e-45
Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFR D+G+ W GAYYGG VYDGYGYA PPPH+P IY AAYG YP YG +QQQV+
Sbjct:  310 FSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS 420          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: K4BV15_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g079310.2 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.790e-45
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG  YDGYGYAFP PH+PG+Y AAYG YP YG++QQQV+
Sbjct:  341 FAQYGEIVSVKIPVGKGCGFVQFAKRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQPRSDFGNQWTGPYYGGHFYDGYGYAFPQPHDPGMYAAAYGAYPVYGTHQQQVS 451          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A022PX95_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a018561mg PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.003e-44
Identity = 85/111 (76.58%), Postives = 93/111 (83.78%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEI+SVKIPVGKGCGFVQFA RN AEEALQ+L GT IGKQTVRLSWGRNP NKQ R D GNQW GAYYG   +DGYGYA  PPH+P +Y AAYG YP YG++QQQV+
Sbjct:   15 FSQYGEIISVKIPVGKGCGFVQFANRNEAEEALQQLTGTTIGKQTVRLSWGRNPANKQSRGDLGNQWTGAYYGPPSFDGYGYAVGPPHDPSMYAAAYGAYPMYGTHQQQVS 125          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: B9R7H3_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1591740 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.278e-44
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNK-QFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA R+NAEEALQKLNGT+IGKQTVRLSWGRNP NK Q R+D+GNQWGGAYYGG +YDGYGYA PPPH+P +Y A YG YP YGS+QQQV+
Sbjct:  332 FSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQLRSDFGNQWGGAYYGGQIYDGYGYALPPPHDPSMYAAPYGAYPVYGSHQQQVS 443          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: I1M8J4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.176e-44
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA  P H+P IY AAYG YP YG +QQQV+
Sbjct:  315 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 425          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FJ83_THECC (RNA-binding protein 47C isoform 1 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.618e-43
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+     A YG YP YGS+QQQV+
Sbjct:  322 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 435          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A061FBZ6_THECC (RNA-binding protein 47C isoform 3 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.673e-43
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGI---YTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQFRADYGNQW GAYYGG VYDGYGYAFPPPH+PG+     A YG YP YGS+QQQV+
Sbjct:  323 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAFPPPHDPGMYAAAAATYGAYPIYGSHQQQVS 436          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A5BPW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008697 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.284e-43
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = -2
Query:   17 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ-----FRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQ 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ      RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQ
Sbjct:  196 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQANSLFMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQ 309          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0A0LP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360590 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.763e-43
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHN-PGIYTAAYGVYPFYGSYQQQVN 343
            FSQ+GEIVSVKIPVGKGCGF+QFA R NAEEALQKLNGT+IGKQTVRLSWGR+PTNKQ+R DYGN W GAYYGG VY GYGYA P P++ P +Y AAYG YP YG++QQQVN
Sbjct:  318 FSQHGEIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPTNKQYRGDYGNHWSGAYYGGQVYGGYGYALPLPYDPPTMYAAAYGAYPMYGTHQQQVN 429          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.725e-13
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -2
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +GEIV VKIP GKGCGFVQF  R +AE A+ +L G  +G   +RLSWGRN
Sbjct:  323 FQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.593e-11
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = -2
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +G I+++KIP GKGCGFVQ++ ++ AE+A+  + G ++G   +RL+WG N
Sbjct:  317 FQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 5.138e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G I++V+IP GK CGFV+F  R +AE ++Q L G ++G   +RLSWGR
Sbjct:  380 FKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-10
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = -2
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G IV VKIPVGK CGFVQ+  R +AE A+  + G  I    VRLSWGR
Sbjct:  333 FQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MXR5_SOYBN7.794e-4581.08Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
V7ASP6_PHAVU7.997e-4582.88Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
K4BV15_SOLLC9.790e-4581.08Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022PX95_ERYGU2.003e-4476.58Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
B9R7H3_RICCO2.278e-4482.14Nuclear acid binding protein, putative OS=Ricinus ... [more]
I1M8J4_SOYBN5.176e-4481.08Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A061FJ83_THECC3.618e-4385.09RNA-binding protein 47C isoform 1 OS=Theobroma cac... [more]
A0A061FBZ6_THECC3.673e-4385.09RNA-binding protein 47C isoform 3 OS=Theobroma cac... [more]
A5BPW5_VITVI6.284e-4380.70Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LP64_CUCSA6.763e-4378.57Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YG41_SCHPO1.725e-1360.38Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO3.593e-1145.28RNA-binding post-transcriptional regulator csx1 OS... [more]
NGR1_YEAST5.138e-1050.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
NAM8_YEAST5.355e-1055.77Protein NAM8 OS=Saccharomyces cerevisiae (strain A... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR24012:SF352SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bp
TATTATCTCAGTTTACTTGTTGCTGGTAACTGCCATAGAATGGATAAACC
CCATACGCAGCCGTATATATACCCGGGTTATGAGGTGGTGGAAAAGCATA
TCCATAGCCATCATACACCGCTCCTCCATAGTAAGCTCCACCCCATTGGT
TACCATAATCTGCTCTAAACTGCTTATTTGTAGGATTGCGTCCCCAAGAG
AGTCTCACTGTTTGCTTGCCAATCATAGTCCCATTCAACTTTTGCAATGC
CTCCTCAGCATTGTTCCTCCCGGCGAATTGTACAAACCCGCATCCTTTTC
CAACAGGTATTTTAACAGAGACTATTTCACCATATTGAGAGAAA
back to top