g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011612
Unique Nameg.arboreum_cottongen_reftransV1_0011612
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0011612:1..344 .
Chr10:16710784..16711485 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2QK31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209600 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.526e-57
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGT+IGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN
Sbjct:  322 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTIIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 432
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: W9R830_9ROSA (Polyadenylate-binding protein RBP47C OS=Morus notabilis GN=L484_026088 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.743e-47
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIP GKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQ+R D+GNQWGGAYYGG VYDGYGYA PPPH+P +Y A+YG YP YGS+QQQVN
Sbjct:  313 FSQYGEIVSVKIPTGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQYRGDFGNQWGGAYYGGQVYDGYGYALPPPHDPSMYAASYGAYPLYGSHQQQVN 423
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2UUY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G275200 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.416e-47
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQ+A R NAEEALQKLNG +IGKQTVRLSWGRNP NKQFR DYGNQWGGAYYGG VYDGY YA PPPH+PG+Y AAYG YP YGS+QQQV+
Sbjct:  309 FSQYGEIVSVKIPVGKGCGFVQYANRKNAEEALQKLNGMVIGKQTVRLSWGRNPANKQFRGDYGNQWGGAYYGGQVYDGYRYAVPPPHDPGMYAAAYGTYPIYGSHQQQVS 419
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: F6H1D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11080 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.001e-47
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQV+
Sbjct:  308 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQVS 418
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: M1ADU0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007990 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.455e-47
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG  YDGYGYAFPPPH+PG+Y AAYG YP YG++QQQV+
Sbjct:  286 FAQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQSRSDFGNQWTGPYYGGHFYDGYGYAFPPPHDPGMYAAAYGAYPVYGTHQQQVS 396
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2PYG7_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_008721 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.059e-46
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 318
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7CRK3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G019600g PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.225e-46
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG++QQQV+
Sbjct:  305 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 415
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: T2DLH7_PHAVU (RNA binding post-transcriptional regulator csx1 like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.796e-46
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG++QQQV+
Sbjct:  306 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2QRK5_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_022058 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.165e-45
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  301 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 411
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2SHY4_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_045312 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.041e-45
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2 
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA  P H+P IY AAYG YP YG +QQQV+
Sbjct:  208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 318
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.725e-13
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -2 
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +GEIV VKIP GKGCGFVQF  R +AE A+ +L G  +G   +RLSWGRN
Sbjct:  323 FQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.593e-11
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = -2 
Query:  185 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRN 343
            F  +G I+++KIP GKGCGFVQ++ ++ AE+A+  + G ++G   +RL+WG N
Sbjct:  317 FQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 5.138e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2 
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G I++V+IP GK CGFV+F  R +AE ++Q L G ++G   +RLSWGR
Sbjct:  380 FKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-10
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = -2 
Query:  188 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGR 343
            F  +G IV VKIPVGK CGFVQ+  R +AE A+  + G  I    VRLSWGR
Sbjct:  333 FQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QK31_GOSRA8.526e-5799.10Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9R830_9ROSA1.743e-4784.68Polyadenylate-binding protein RBP47C OS=Morus nota... [more]
A0A0D2UUY3_GOSRA2.416e-4784.68Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6H1D6_VITVI5.001e-4783.78Putative uncharacterized protein OS=Vitis vinifera... [more]
M1ADU0_SOLTU8.455e-4781.98Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2PYG7_GLYSO6.059e-4681.08Polyadenylate-binding protein RBP47C OS=Glycine so... [more]
V7CRK3_PHAVU8.225e-4681.98Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
T2DLH7_PHAVU9.796e-4681.98RNA binding post-transcriptional regulator csx1 li... [more]
A0A0B2QRK5_GLYSO1.165e-4583.78Polyadenylate-binding protein RBP47C OS=Glycine so... [more]
A0A0B2SHY4_GLYSO2.041e-4581.08Polyadenylate-binding protein RBP47C OS=Glycine so... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YG41_SCHPO1.725e-1360.38Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO3.593e-1145.28RNA-binding post-transcriptional regulator csx1 OS... [more]
NGR1_YEAST5.138e-1050.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
NAM8_YEAST5.355e-1055.77Protein NAM8 OS=Saccharomyces cerevisiae (strain A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR24012:SF352SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bp
TATTATCTCAGTTTACTTGTTGCTGGTAACTGCCATAGAATGGATAAACC
CCATACGCAGCCGTATATATACCCGGGTTATGAGGTGGTGGAAAAGCATA
TCCATAGCCATCATACACCGCTCCTCCATAGTAAGCTCCACCCCATTGGT
TACCATAATCTGCTCTAAACTGCTTATTTGTAGGATTGCGTCCCCAAGAG
AGTCTCACTGTTTGCTTGCCAATCATAGTCCCATTCAACTTTTGCAATGC
CTCCTCAGCATTGTTCCTCCCGGCGAATTGTACAAACCCGCATCCTTTTC
CAACAGGTATTTTAACAGAGACTATTTCACCATATTGAGAGAAA
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