g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2QK31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209600 PE=4 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 8.526e-57 Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGT+IGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN Sbjct: 322 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTIIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 432
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: W9R830_9ROSA (Polyadenylate-binding protein RBP47C OS=Morus notabilis GN=L484_026088 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.743e-47 Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIP GKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQ+R D+GNQWGGAYYGG VYDGYGYA PPPH+P +Y A+YG YP YGS+QQQVN Sbjct: 313 FSQYGEIVSVKIPTGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQYRGDFGNQWGGAYYGGQVYDGYGYALPPPHDPSMYAASYGAYPLYGSHQQQVN 423
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2UUY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G275200 PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 2.416e-47 Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQ+A R NAEEALQKLNG +IGKQTVRLSWGRNP NKQFR DYGNQWGGAYYGG VYDGY YA PPPH+PG+Y AAYG YP YGS+QQQV+ Sbjct: 309 FSQYGEIVSVKIPVGKGCGFVQYANRKNAEEALQKLNGMVIGKQTVRLSWGRNPANKQFRGDYGNQWGGAYYGGQVYDGYRYAVPPPHDPGMYAAAYGTYPIYGSHQQQVS 419
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: F6H1D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11080 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 5.001e-47 Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQV+ Sbjct: 308 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQVS 418
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: M1ADU0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007990 PE=4 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 8.455e-47 Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG YDGYGYAFPPPH+PG+Y AAYG YP YG++QQQV+ Sbjct: 286 FAQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQSRSDFGNQWTGPYYGGHFYDGYGYAFPPPHDPGMYAAAYGAYPVYGTHQQQVS 396
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2PYG7_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_008721 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 6.059e-46 Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG +YDGYGYA PP H+P IY AAYG YP YG +QQQV+ Sbjct: 208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 318
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7CRK3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G019600g PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.225e-46 Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG +YDGYGYA PP H+P IY AAYG YP YG++QQQV+ Sbjct: 305 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 415
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: T2DLH7_PHAVU (RNA binding post-transcriptional regulator csx1 like protein OS=Phaseolus vulgaris PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 9.796e-46 Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG +YDGYGYA PP H+P IY AAYG YP YG++QQQV+ Sbjct: 306 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 416
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2QRK5_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_022058 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.165e-45 Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+ Sbjct: 301 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 411
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2SHY4_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_045312 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.041e-45 Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG +YDGYGYA P H+P IY AAYG YP YG +QQQV+ Sbjct: 208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 318
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 6.348e-35 Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 FS++GEIVSVKIPVGKGCGFVQF R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R YGNQW YYGG Y+GYGY P P +P +Y AA YP YG +QQQV+ Sbjct: 326 FSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 434
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.245e-34 Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343 F+++GEIVSVKIPVGKGCGFVQF R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R YGNQW YYGG Y+GYGY P P +P +Y AA YP YG +QQQV+ Sbjct: 324 FNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 432
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.673e-28 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYT--AAYGVYP-FYGSYQQQVN 343 F+Q+GE+VSVKIP GKGCGFVQF+ R++A+EA+QKL+G +IGKQ VRLSWGR+P NKQ R D G+QW G Y G Y GYGY + G+Y AAYG YG++QQ V+ Sbjct: 315 FNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.785e-27 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = -2 Query: 143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343 FSQ+GE+VSVKIPVGKGCGFVQFA R +AE+A++ LNGT+IGK TVRLSWGR+P NKQ+R D G QW Sbjct: 341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQW 406
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.168e-27 Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = -2 Query: 143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343 FS +GE+VSVKIPVGKGCGFVQFA R +AEEA+ LNGT+IGK TVRLSWGR+P NKQ+R+D GNQW Sbjct: 347 FSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQW 412
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.618e-21 Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = -2 Query: 20 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQ 343 FS YGE+V VKI GK CGFVQF R +AE+AL LNGT +G Q++RLSWGR+P++KQ GGAYYG PP +P +Y YG YP Y +YQQ Sbjct: 302 FSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY---YGNYPGYANYQQ 406
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.299e-20 Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = -2 Query: 170 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ 343 FSQYGEIV VKIP GK CGFVQF+ ++ AEEAL+ LNG +G TVRLSWGR+P+NKQ Sbjct: 281 FSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.456e-19 Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -2 Query: 158 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRAD 343 F Q+GE+V VKIP GK CGFVQ+A R AE+AL LNGT +G Q++RLSWGR+P+NKQ + D Sbjct: 298 FGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.971e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -2 Query: 155 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY 343 F Q+GE++ VKIP GK CGFVQ+A + +AE AL LNGT +G Q++RLSWGR+P + +A + Sbjct: 280 FGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.457e-14 Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = -2 Query: 182 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNP 343 FSQ GE++ VKIP KG G+VQF R +AEEA+Q++ G +IG+Q VR+SW +NP Sbjct: 257 FSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 14
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bpback to top |