g.arboreum_cottongen_reftransV1_0020385, g.arboreum_cottongen_reftransV1_0020385 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020385
Unique Nameg.arboreum_cottongen_reftransV1_0020385
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length693
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0020385:1..693 .
Chr6:120442820..120443843 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: M5XF58_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002337mg PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 9.177e-47
Identity = 94/164 (57.32%), Postives = 123/164 (75.00%), Query Frame = -1
Query:    1 RSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 492
            ++  AV+W KHDLR+DDHPAL AA  H  V+PLY+FD RI+ R+ + M+E+L+ AL+DLR+SL+++GSNLMIR G AE+ ++ELVKEV  T V+ EEEVEY  RQ+ G VK TLE   S     + V+WRTPFYDVK+LK++P SYNDF + +L  T PL PAT
Sbjct:   40 KAGVAVVWLKHDLRIDDHPALLAASNHNAVVPLYIFDHRIISRFPEKMIEMLVLALQDLRSSLRDKGSNLMIRLGSAESALQELVKEVLVTTVYAEEEVEYGFRQMTGSVKGTLEAMPSAP---NFVLWRTPFYDVKSLKDIPDSYNDFTKLRLPITLPLPPAT 200          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A068UA11_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00020308001 PE=4 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.668e-46
Identity = 100/170 (58.82%), Postives = 130/170 (76.47%), Query Frame = -1
Query:    7 ATDVRSR-SAVLWFKHDLRLDDHPALSAAETHR-FVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKK--TLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLP 504
            A D  S+ +A++W+KHDLR+DDHPAL AA  H   +LPLY+FD RIL R+SD+ML+LLLFALEDLR SLK QGSNLMIR+G AE VI+ L +EVKAT ++ EEEVEYE+R+++  VK+   L T SS +    + MWRTPFY +KNL+++P SY+ FK+ KL   SP+LP
Sbjct:   15 AADTSSKGAAIIWYKHDLRIDDHPALVAASHHHPMLLPLYIFDHRILSRFSDEMLQLLLFALEDLRKSLKGQGSNLMIRFGNAETVIQHLAREVKATSIYAEEEVEYELRRMLDAVKEALALATVSSAEAYPRMTMWRTPFYGMKNLEDMPESYDGFKQLKLPVVSPVLP 184          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: D7MG21_ARALL (Deoxyribodipyrimidine photolyase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492304 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.033e-45
Identity = 100/173 (57.80%), Postives = 125/173 (72.25%), Query Frame = -1
Query:    1 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519
            C LS+AT+  S +AV+WFKHDLR+DDHP L A+  H  V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+ YG AENVI +LVKEV+A  VF+EEEVEY +  ++  VKK LE  S       IV WRTPFY+ +NL +LP S+ +FK+ K LP S  +PA 
Sbjct:   21 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLASSKHSSVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLSYGNAENVIADLVKEVRAHSVFVEEEVEYHLCDVLDGVKKKLEGFSLSGEQPRIVFWRTPFYESQNLTDLPQSWEEFKKLK-LPISLPVPAA 191          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4ME72_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10024578mg PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.315e-45
Identity = 95/168 (56.55%), Postives = 122/168 (72.62%), Query Frame = -1
Query:   16 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSP 519
            C LS+A      +AV+WFKHDLR+DDHP L AA  +R V+PLYV DRRIL RY+ D LEL + ALE+LR SL++QGSNLM+RYG AENVI++LV EV+A  VF+EEEVEY + +++  VK  +E  S L     IV+WRTPFY+ +NL  LP S+ +FK+ KL  T P
Sbjct:   30 CCLSSAA-TEGSTAVVWFKHDLRVDDHPGLLAASKYRAVIPLYVLDRRILSRYTTDTLELAIIALEELRKSLRKQGSNLMLRYGNAENVIEDLVNEVRAPFVFVEEEVEYHLCEVLDAVKNKMEGVSFLGEPPRIVVWRTPFYETQNLTNLPQSWEEFKKLKLPLTLP 196          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: K7LFK7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.652e-45
Identity = 93/157 (59.24%), Postives = 125/157 (79.62%), Query Frame = -1
Query:   13 SAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPL 483
            +A+LWFKHDLR DDHPAL AA     ++P+YVFD RIL R+SD+ LEL+L A+EDLR SLK++GS+L+IR+G AENVI++L  EVKAT VF E+EVEYE+R +I VVK+ L++ S    +  I +WRTPFYD+K+L+ LPASY++FK+ +L  T+PL
Sbjct:   47 TAILWFKHDLRTDDHPALLAASAFPSLVPIYVFDHRILSRFSDETLELVLLAVEDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVVKQRLKSVSVPQGSPRIELWRTPFYDIKDLENLPASYDEFKKLRLSVTTPL 203          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 6.444e-10
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = -1
Query:   31 WFKHDLRLDDHPALSAAETHRF-VLPLYVFDRRILCRYSXXXXXXXX-------XXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDI-VMWRTPFYDVKNL----KELPASYNDFKE--QKL 471
            WF++DLR+ D+  L++A      VLP+Y FD R   + S    +           ++ +LR +L+ +GSNL++R G  E V+ EL KE+ A  V+   EV ++  +  G ++  ++     +  +++   W +  Y + +L    ++LP++Y  FK+  QKL
Sbjct:  120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK-----EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKL 276          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5XF58_PRUPE9.177e-4757.32Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A068UA11_COFCA1.668e-4658.82Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
D7MG21_ARALL1.033e-4557.80Deoxyribodipyrimidine photolyase family protein OS... [more]
V4ME72_EUTSA4.315e-4556.55Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
K7LFK7_SOYBN6.652e-4559.24Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHR2_ARATH6.444e-1029.01Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 46..157
e-value: 1.2E-24
score: 87.0
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 44..169
score: 26.512
IPR006050DNA photolyase, N-terminalSUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 46..192
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 41..193
e-value: 2.3E-39
score: 134.4
IPR014133Cryptochrome DASHPANTHERPTHR11455:SF22CRYPTOCHROME DASHcoord: 42..193
NoneNo IPR availablePANTHERPTHR11455CRYPTOCHROMEcoord: 42..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020385 ID=g.arboreum_cottongen_reftransV1_0020385; Name=g.arboreum_cottongen_reftransV1_0020385; organism=Gossypium arboreum; type=contig; length=693bp
TGTTGCCGGAAGAAGAGGCGAAGTGGGTAGTAACTTCTGTTCTTTAAAGT
CATTATATGATGCAGGCAGCTCCTTCAGATTCTTAACATCATAGAATGGA
GTTCTCCACATGACAATGTCCAGATTCCAATCTAAAGACGAAGACGTTTC
CAATGTCTTCTTGACAACTCCAATCAGCTGACGCATTTCATACTCTACCT
CTTCTTCGATAAAAACATCCGTAGCTTTCACCTCTTTTACAAGCTCTTTA
ATGACATTTTCAGCGCAGCCGTATCGAATCATCAAATTGGAGCCTTGTTC
CTTCAAAGAGTTTCTCAAATCTTCCAATGCGAAGAGAAGTAGCTCGAGCA
TATCATCAGAATAACGACAGAGAATGCGGCGATCGAAGACATAGAGAGGG
AGAACAAAACGGTGCGTTTCAGCGGCAGAGAGAGCGGGGTGATCGTCGAG
GCGGAGGTCGTGTTTGAACCAGAGAACGGCGGAACGAGAGCGTACATCCG
TAGCAGTAGAAAGCGAGCAAACGAAGGAACGGCGACGGCGGATTGAACGA
GAAGAAAAGAAGTGAAATGGCGAGGAAAGGAGTGTGAAAGAGCGAGAGAA
AGAAAGGAGAGCCATGGAGTAACGGAGTCCATCAAAGTTAGAAGAGAAAA
TCTATTATTAGGAAGTAAAAAGGGGAGAGAAAGTGAGAGGGGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR014133Cry_DASH
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003913DNA photolyase activity