g.arboreum_cottongen_reftransV1_0020385, g.arboreum_cottongen_reftransV1_0020385 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: M5XF58_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002337mg PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 9.177e-47 Identity = 94/164 (57.32%), Postives = 123/164 (75.00%), Query Frame = -1 Query: 1 RSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 492 ++ AV+W KHDLR+DDHPAL AA H V+PLY+FD RI+ R+ + M+E+L+ AL+DLR+SL+++GSNLMIR G AE+ ++ELVKEV T V+ EEEVEY RQ+ G VK TLE S + V+WRTPFYDVK+LK++P SYNDF + +L T PL PAT Sbjct: 40 KAGVAVVWLKHDLRIDDHPALLAASNHNAVVPLYIFDHRIISRFPEKMIEMLVLALQDLRSSLRDKGSNLMIRLGSAESALQELVKEVLVTTVYAEEEVEYGFRQMTGSVKGTLEAMPSAP---NFVLWRTPFYDVKSLKDIPDSYNDFTKLRLPITLPLPPAT 200
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A068UA11_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00020308001 PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.668e-46 Identity = 100/170 (58.82%), Postives = 130/170 (76.47%), Query Frame = -1 Query: 7 ATDVRSR-SAVLWFKHDLRLDDHPALSAAETHR-FVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKK--TLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLP 504 A D S+ +A++W+KHDLR+DDHPAL AA H +LPLY+FD RIL R+SD+ML+LLLFALEDLR SLK QGSNLMIR+G AE VI+ L +EVKAT ++ EEEVEYE+R+++ VK+ L T SS + + MWRTPFY +KNL+++P SY+ FK+ KL SP+LP Sbjct: 15 AADTSSKGAAIIWYKHDLRIDDHPALVAASHHHPMLLPLYIFDHRILSRFSDEMLQLLLFALEDLRKSLKGQGSNLMIRFGNAETVIQHLAREVKATSIYAEEEVEYELRRMLDAVKEALALATVSSAEAYPRMTMWRTPFYGMKNLEDMPESYDGFKQLKLPVVSPVLP 184
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: D7MG21_ARALL (Deoxyribodipyrimidine photolyase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492304 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.033e-45 Identity = 100/173 (57.80%), Postives = 125/173 (72.25%), Query Frame = -1 Query: 1 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519 C LS+AT+ S +AV+WFKHDLR+DDHP L A+ H V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+ YG AENVI +LVKEV+A VF+EEEVEY + ++ VKK LE S IV WRTPFY+ +NL +LP S+ +FK+ K LP S +PA Sbjct: 21 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLASSKHSSVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLSYGNAENVIADLVKEVRAHSVFVEEEVEYHLCDVLDGVKKKLEGFSLSGEQPRIVFWRTPFYESQNLTDLPQSWEEFKKLK-LPISLPVPAA 191
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4ME72_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10024578mg PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.315e-45 Identity = 95/168 (56.55%), Postives = 122/168 (72.62%), Query Frame = -1 Query: 16 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSP 519 C LS+A +AV+WFKHDLR+DDHP L AA +R V+PLYV DRRIL RY+ D LEL + ALE+LR SL++QGSNLM+RYG AENVI++LV EV+A VF+EEEVEY + +++ VK +E S L IV+WRTPFY+ +NL LP S+ +FK+ KL T P Sbjct: 30 CCLSSAA-TEGSTAVVWFKHDLRVDDHPGLLAASKYRAVIPLYVLDRRILSRYTTDTLELAIIALEELRKSLRKQGSNLMLRYGNAENVIEDLVNEVRAPFVFVEEEVEYHLCEVLDAVKNKMEGVSFLGEPPRIVVWRTPFYETQNLTNLPQSWEEFKKLKLPLTLP 196
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: K7LFK7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 6.652e-45 Identity = 93/157 (59.24%), Postives = 125/157 (79.62%), Query Frame = -1 Query: 13 SAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPL 483 +A+LWFKHDLR DDHPAL AA ++P+YVFD RIL R+SD+ LEL+L A+EDLR SLK++GS+L+IR+G AENVI++L EVKAT VF E+EVEYE+R +I VVK+ L++ S + I +WRTPFYD+K+L+ LPASY++FK+ +L T+PL Sbjct: 47 TAILWFKHDLRTDDHPALLAASAFPSLVPIYVFDHRILSRFSDETLELVLLAVEDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVVKQRLKSVSVPQGSPRIELWRTPFYDIKDLENLPASYDEFKKLRLSVTTPL 203
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 6.444e-10 Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = -1 Query: 31 WFKHDLRLDDHPALSAAETHRF-VLPLYVFDRRILCRYSXXXXXXXX-------XXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDI-VMWRTPFYDVKNL----KELPASYNDFKE--QKL 471 WF++DLR+ D+ L++A VLP+Y FD R + S + ++ +LR +L+ +GSNL++R G E V+ EL KE+ A V+ EV ++ + G ++ ++ + +++ W + Y + +L ++LP++Y FK+ QKL Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK-----EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKL 276 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020385 ID=g.arboreum_cottongen_reftransV1_0020385; Name=g.arboreum_cottongen_reftransV1_0020385; organism=Gossypium arboreum; type=contig; length=693bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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