g.arboreum_cottongen_reftransV1_0020385, g.arboreum_cottongen_reftransV1_0020385 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FQF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.754e-50 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522 VC +S + RS SAV+WFK DLR+DDH L AA ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL S +D I +W+TPFYD+KNL +LP S+N+F++ + TSP+LP T Sbjct: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4S801_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004462mg PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.943e-50 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522 VC +S + RS SAV+WFK DLR+DDH L AA ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL S +D I +W+TPFYD+KNL +LP S+N+F++ + TSP+LP T Sbjct: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FDJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.963e-50 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522 VC +S + RS SAV+WFK DLR+DDH L AA ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL S +D I +W+TPFYD+KNL +LP S+N+F++ + TSP+LP T Sbjct: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A022QER2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002186mg PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.474e-50 Identity = 100/162 (61.73%), Postives = 136/162 (83.95%), Query Frame = -1 Query: 7 RSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLP 492 +S +A+LW+KHDLR++DH L+AA HR V+PLY+FDRRIL R+SD+MLELLLFALEDL+ SL EQGSNL++R+G AENVI ELVKEV+A+++F+EEEVEYE+ ++ +VK++L TSS N +IVMW +PFYDVK+ ++LP+S++DF++ KL SPLLP Sbjct: 45 KSGTAILWYKHDLRVEDHLGLNAASQHRCVVPLYIFDRRILSRFSDEMLELLLFALEDLKKSLTEQGSNLLVRFGSAENVIGELVKEVQASNIFVEEEVEYELCLMVDLVKESLSTSSFNGNNPEIVMWSSPFYDVKSSRDLPSSFDDFQKFKLPIVSPLLP 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FGZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.195e-50 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522 VC +S + RS SAV+WFK DLR+DDH L AA ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL S +D I +W+TPFYD+KNL +LP S+N+F++ + TSP+LP T Sbjct: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4U6T3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004462mg PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.291e-50 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522 VC +S + RS SAV+WFK DLR+DDH L AA ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL S +D I +W+TPFYD+KNL +LP S+N+F++ + TSP+LP T Sbjct: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: B9R9Q0_RICCO (Hydrolase, putative OS=Ricinus communis GN=RCOM_1499940 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 9.243e-50 Identity = 110/178 (61.80%), Postives = 135/178 (75.84%), Query Frame = -1 Query: 1 CSLSTATDVRSR--SAVLWFKHDLRLDDHPALSAAETHR--FVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSS-SLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519 CSLS T R R SA+LWFK DLR+DDH L A H +LPLYVFD IL RYSD+MLE++LFAL+DLRNSLKEQGSNLMIR+G AE VI++LV+EV+AT VF EEEVEY +R + +VK+ L S LD N IV+W+TPFYD+KNLK+LPAS++ FK+ +L TSP+LP T Sbjct: 30 CSLSPQTTNRRRTSSAILWFKQDLRVDDHFGLLQASNHSPSSLLPLYVFDHIILSRYSDEMLEIVLFALQDLRNSLKEQGSNLMIRFGSAEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQNLTKSQPHLDVNPKIVLWQTPFYDIKNLKDLPASHDHFKKLQLPVTSPILPPT 207
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: Q9SB34_ARATH (Putative uncharacterized protein AT4g25290 OS=Arabidopsis thaliana GN=F24A6.130 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.767e-47 Identity = 101/172 (58.72%), Postives = 128/172 (74.42%), Query Frame = -1 Query: 4 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPA 519 C LS+AT+ S +AV+WFKHDLR+DDHP L AA HR V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+RYG AENVI++LVKEV+A VF+EEEVEY + +++ VK LE S + IV WRTPFY+ +NL +LP S+ +FK+ KL T P+ A Sbjct: 25 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAA 195
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: R0F395_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004267mg PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.211e-47 Identity = 100/173 (57.80%), Postives = 128/173 (73.99%), Query Frame = -1 Query: 1 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519 C LS+ T+ S +AV+WFKHDLR+DDHP L AA H+ V+PLYV DRR+L RY+ D LEL + ALE+LR SLK+QGSNLM+RYG AENVI+ELVKEV+A VF+EEEVEY + +++ VKK LE S +V+WRTPFY+ NL +LP S+ +FK+ K LP S +PA Sbjct: 25 CCLSSVTN-ESSTAVVWFKHDLRVDDHPGLLAASKHKTVIPLYVLDRRVLSRYTTDTLELAIIALEELRKSLKKQGSNLMLRYGEAENVIEELVKEVRAPFVFVEEEVEYHLCEVLDGVKKNLEGVSFPGGPPRVVLWRTPFYESLNLTDLPQSWKNFKKLK-LPISLPVPAA 195
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: F4JSJ6_ARATH (DNA photolyase OS=Arabidopsis thaliana GN=At4g25290 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.434e-47 Identity = 101/172 (58.72%), Postives = 128/172 (74.42%), Query Frame = -1 Query: 4 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPA 519 C LS+AT+ S +AV+WFKHDLR+DDHP L AA HR V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+RYG AENVI++LVKEV+A VF+EEEVEY + +++ VK LE S + IV WRTPFY+ +NL +LP S+ +FK+ KL T P+ A Sbjct: 25 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAA 195
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 6.444e-10 Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = -1 Query: 31 WFKHDLRLDDHPALSAAETHRF-VLPLYVFDRRILCRYSXXXXXXXX-------XXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDI-VMWRTPFYDVKNL----KELPASYNDFKE--QKL 471 WF++DLR+ D+ L++A VLP+Y FD R + S + ++ +LR +L+ +GSNL++R G E V+ EL KE+ A V+ EV ++ + G ++ ++ + +++ W + Y + +L ++LP++Y FK+ QKL Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK-----EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKL 276 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020385 ID=g.arboreum_cottongen_reftransV1_0020385; Name=g.arboreum_cottongen_reftransV1_0020385; organism=Gossypium arboreum; type=contig; length=693bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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