g.arboreum_cottongen_reftransV1_0020385, g.arboreum_cottongen_reftransV1_0020385 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020385
Unique Nameg.arboreum_cottongen_reftransV1_0020385
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length693
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0020385:1..693 .
Chr6:120442820..120443843 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FQF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.754e-50
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522
            VC +S      +  RS SAV+WFK DLR+DDH  L AA  ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G  ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL   S +D    I +W+TPFYD+KNL +LP S+N+F++ +   TSP+LP T
Sbjct:   29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4S801_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004462mg PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.943e-50
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522
            VC +S      +  RS SAV+WFK DLR+DDH  L AA  ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G  ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL   S +D    I +W+TPFYD+KNL +LP S+N+F++ +   TSP+LP T
Sbjct:   29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FDJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.963e-50
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522
            VC +S      +  RS SAV+WFK DLR+DDH  L AA  ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G  ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL   S +D    I +W+TPFYD+KNL +LP S+N+F++ +   TSP+LP T
Sbjct:   29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A022QER2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002186mg PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.474e-50
Identity = 100/162 (61.73%), Postives = 136/162 (83.95%), Query Frame = -1
Query:    7 RSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLP 492
            +S +A+LW+KHDLR++DH  L+AA  HR V+PLY+FDRRIL R+SD+MLELLLFALEDL+ SL EQGSNL++R+G AENVI ELVKEV+A+++F+EEEVEYE+  ++ +VK++L TSS    N +IVMW +PFYDVK+ ++LP+S++DF++ KL   SPLLP
Sbjct:   45 KSGTAILWYKHDLRVEDHLGLNAASQHRCVVPLYIFDRRILSRFSDEMLELLLFALEDLKKSLTEQGSNLLVRFGSAENVIGELVKEVQASNIFVEEEVEYELCLMVDLVKESLSTSSFNGNNPEIVMWSSPFYDVKSSRDLPSSFDDFQKFKLPIVSPLLP 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: A0A067FGZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005554mg PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.195e-50
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522
            VC +S      +  RS SAV+WFK DLR+DDH  L AA  ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G  ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL   S +D    I +W+TPFYD+KNL +LP S+N+F++ +   TSP+LP T
Sbjct:   29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: V4U6T3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004462mg PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.291e-50
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 VCSLS----TATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 522
            VC +S      +  RS SAV+WFK DLR+DDH  L AA  ++ V+PLYVFD RIL RYS++MLEL++FALEDLR SLKEQGS+LMIR+G  ENVI+ELV+EVKAT VF EEEVEY +RQ++ +V +TL   S +D    I +W+TPFYD+KNL +LP S+N+F++ +   TSP+LP T
Sbjct:   29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT 206          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: B9R9Q0_RICCO (Hydrolase, putative OS=Ricinus communis GN=RCOM_1499940 PE=4 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.243e-50
Identity = 110/178 (61.80%), Postives = 135/178 (75.84%), Query Frame = -1
Query:    1 CSLSTATDVRSR--SAVLWFKHDLRLDDHPALSAAETHR--FVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSS-SLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519
            CSLS  T  R R  SA+LWFK DLR+DDH  L  A  H    +LPLYVFD  IL RYSD+MLE++LFAL+DLRNSLKEQGSNLMIR+G AE VI++LV+EV+AT VF EEEVEY +R  + +VK+ L  S   LD N  IV+W+TPFYD+KNLK+LPAS++ FK+ +L  TSP+LP T
Sbjct:   30 CSLSPQTTNRRRTSSAILWFKQDLRVDDHFGLLQASNHSPSSLLPLYVFDHIILSRYSDEMLEIVLFALQDLRNSLKEQGSNLMIRFGSAEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQNLTKSQPHLDVNPKIVLWQTPFYDIKNLKDLPASHDHFKKLQLPVTSPILPPT 207          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: Q9SB34_ARATH (Putative uncharacterized protein AT4g25290 OS=Arabidopsis thaliana GN=F24A6.130 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.767e-47
Identity = 101/172 (58.72%), Postives = 128/172 (74.42%), Query Frame = -1
Query:    4 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPA 519
            C LS+AT+  S +AV+WFKHDLR+DDHP L AA  HR V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+RYG AENVI++LVKEV+A  VF+EEEVEY + +++  VK  LE  S    +  IV WRTPFY+ +NL +LP S+ +FK+ KL  T P+  A
Sbjct:   25 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAA 195          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: R0F395_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004267mg PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.211e-47
Identity = 100/173 (57.80%), Postives = 128/173 (73.99%), Query Frame = -1
Query:    1 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPAT 519
            C LS+ T+  S +AV+WFKHDLR+DDHP L AA  H+ V+PLYV DRR+L RY+ D LEL + ALE+LR SLK+QGSNLM+RYG AENVI+ELVKEV+A  VF+EEEVEY + +++  VKK LE  S       +V+WRTPFY+  NL +LP S+ +FK+ K LP S  +PA 
Sbjct:   25 CCLSSVTN-ESSTAVVWFKHDLRVDDHPGLLAASKHKTVIPLYVLDRRVLSRYTTDTLELAIIALEELRKSLKKQGSNLMLRYGEAENVIEELVKEVRAPFVFVEEEVEYHLCEVLDGVKKNLEGVSFPGGPPRVVLWRTPFYESLNLTDLPQSWKNFKKLK-LPISLPVPAA 195          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Match: F4JSJ6_ARATH (DNA photolyase OS=Arabidopsis thaliana GN=At4g25290 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.434e-47
Identity = 101/172 (58.72%), Postives = 128/172 (74.42%), Query Frame = -1
Query:    4 CSLSTATDVRSRSAVLWFKHDLRLDDHPALSAAETHRFVLPLYVFDRRILCRYSXXXXXXXXXXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDIVMWRTPFYDVKNLKELPASYNDFKEQKLLPTSPLLPA 519
            C LS+AT+  S +AV+WFKHDLR+DDHP L AA  HR V+PLYV DRRIL RY+ D LEL + ALEDLR +LK+QGSNLM+RYG AENVI++LVKEV+A  VF+EEEVEY + +++  VK  LE  S    +  IV WRTPFY+ +NL +LP S+ +FK+ KL  T P+  A
Sbjct:   25 CCLSSATNEGS-TAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAA 195          
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 6.444e-10
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = -1
Query:   31 WFKHDLRLDDHPALSAAETHRF-VLPLYVFDRRILCRYSXXXXXXXX-------XXXXXLRNSLKEQGSNLMIRYGCAENVIKELVKEVKATDVFIEEEVEYEMRQLIGVVKKTLETSSSLDWNLDI-VMWRTPFYDVKNL----KELPASYNDFKE--QKL 471
            WF++DLR+ D+  L++A      VLP+Y FD R   + S    +           ++ +LR +L+ +GSNL++R G  E V+ EL KE+ A  V+   EV ++  +  G ++  ++     +  +++   W +  Y + +L    ++LP++Y  FK+  QKL
Sbjct:  120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK-----EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKL 276          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067FQF6_CITSI1.754e-5058.43Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4S801_9ROSI1.943e-5058.43Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067FDJ6_CITSI1.963e-5058.43Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A022QER2_ERYGU2.474e-5061.73Uncharacterized protein OS=Erythranthe guttata GN=... [more]
A0A067FGZ3_CITSI3.195e-5058.43Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4U6T3_9ROSI3.291e-5058.43Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9R9Q0_RICCO9.243e-5061.80Hydrolase, putative OS=Ricinus communis GN=RCOM_14... [more]
Q9SB34_ARATH1.767e-4758.72Putative uncharacterized protein AT4g25290 OS=Arab... [more]
R0F395_9BRAS4.211e-4757.80Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
F4JSJ6_ARATH4.434e-4758.72DNA photolyase OS=Arabidopsis thaliana GN=At4g2529... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020385 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHR2_ARATH6.444e-1029.01Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 46..157
e-value: 1.2E-24
score: 87.0
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 44..169
score: 26.512
IPR006050DNA photolyase, N-terminalSUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 46..192
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 41..193
e-value: 2.3E-39
score: 134.4
IPR014133Cryptochrome DASHPANTHERPTHR11455:SF22CRYPTOCHROME DASHcoord: 42..193
NoneNo IPR availablePANTHERPTHR11455CRYPTOCHROMEcoord: 42..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020385 ID=g.arboreum_cottongen_reftransV1_0020385; Name=g.arboreum_cottongen_reftransV1_0020385; organism=Gossypium arboreum; type=contig; length=693bp
TGTTGCCGGAAGAAGAGGCGAAGTGGGTAGTAACTTCTGTTCTTTAAAGT
CATTATATGATGCAGGCAGCTCCTTCAGATTCTTAACATCATAGAATGGA
GTTCTCCACATGACAATGTCCAGATTCCAATCTAAAGACGAAGACGTTTC
CAATGTCTTCTTGACAACTCCAATCAGCTGACGCATTTCATACTCTACCT
CTTCTTCGATAAAAACATCCGTAGCTTTCACCTCTTTTACAAGCTCTTTA
ATGACATTTTCAGCGCAGCCGTATCGAATCATCAAATTGGAGCCTTGTTC
CTTCAAAGAGTTTCTCAAATCTTCCAATGCGAAGAGAAGTAGCTCGAGCA
TATCATCAGAATAACGACAGAGAATGCGGCGATCGAAGACATAGAGAGGG
AGAACAAAACGGTGCGTTTCAGCGGCAGAGAGAGCGGGGTGATCGTCGAG
GCGGAGGTCGTGTTTGAACCAGAGAACGGCGGAACGAGAGCGTACATCCG
TAGCAGTAGAAAGCGAGCAAACGAAGGAACGGCGACGGCGGATTGAACGA
GAAGAAAAGAAGTGAAATGGCGAGGAAAGGAGTGTGAAAGAGCGAGAGAA
AGAAAGGAGAGCCATGGAGTAACGGAGTCCATCAAAGTTAGAAGAGAAAA
TCTATTATTAGGAAGTAAAAAGGGGAGAGAAAGTGAGAGGGGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR014133Cry_DASH
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003913DNA photolyase activity