g.arboreum_cottongen_reftransV1_0013881, g.arboreum_cottongen_reftransV1_0013881 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013881
Unique Nameg.arboreum_cottongen_reftransV1_0013881
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0013881:1..520 .
Chr7:88691012..88692564 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: M5X5Z7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000061mg PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.371e-66
Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGS-ALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            LHS++EA+HIQ AE+DRGS   + S+  D+ GD+GLQNVI+YLRRTK+IAETEISLLKQEKLRLQSQLE+ALKA E+A+++L+AERANSR++L TE+EIKSLQ Q+REMNLLRESN+QLREENKHNFEECQKLRE+  K  IE++ LE  L ERQ E+EA +KE+E
Sbjct: 1147 LHSQLEALHIQLAERDRGSFGTSASTGSDTSGDAGLQNVISYLRRTKEIAETEISLLKQEKLRLQSQLESALKASETAQSSLHAERANSRSLLFTEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREISQKANIETQNLERLLRERQIELEACRKELE 1312          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: B9HI19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08040g PE=4 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.409e-64
Identity = 118/167 (70.66%), Postives = 139/167 (83.23%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            LHSR+EA+HIQ AEKDR +A   + S+ P    D+GLQNV+NYLRR+K+IAETEISLLKQEKLRLQSQL+ ALKA E+A+A+L+ ERANSR +L +E+EIKSLQ Q+RE+ LLRESNMQLREENKHNFEECQKLREV    K +S+ LES L ERQ EVEA KKEIE
Sbjct: 1167 LHSRLEAIHIQLAEKDRNAAGISSGSNAPGLGSDAGLQNVVNYLRRSKEIAETEISLLKQEKLRLQSQLDGALKAAETAQASLHTERANSRTLLFSEEEIKSLQLQVRELTLLRESNMQLREENKHNFEECQKLREVAQNTKAQSDKLESLLRERQIEVEACKKEIE 1333          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: V7BVT9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G045700g PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.002e-63
Identity = 115/167 (68.86%), Postives = 139/167 (83.23%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            LHS++EA HI++AEK+R +A   + SS  D+ GD GLQNVINYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALKA ESA ATL +ERA S++ L +E+E KSLQ Q+REMNLLRESNMQLREENKHNFEECQKLREV  K + E++ LE+ L ER+ E+E  KKEIE
Sbjct: 1164 LHSQLEAFHIRWAEKERNAAGISSGSSTADAFGDGGLQNVINYLRRSKEIAETEVSLLKQEKLRLQSQLESALKAAESAHATLESERAKSKSFLFSEEEFKSLQLQVREMNLLRESNMQLREENKHNFEECQKLREVAQKARTETDNLENVLREREIELEGCKKEIE 1330          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: V7BX69_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G045700g PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.188e-63
Identity = 115/167 (68.86%), Postives = 139/167 (83.23%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            LHS++EA HI++AEK+R +A   + SS  D+ GD GLQNVINYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALKA ESA ATL +ERA S++ L +E+E KSLQ Q+REMNLLRESNMQLREENKHNFEECQKLREV  K + E++ LE+ L ER+ E+E  KKEIE
Sbjct: 1167 LHSQLEAFHIRWAEKERNAAGISSGSSTADAFGDGGLQNVINYLRRSKEIAETEVSLLKQEKLRLQSQLESALKAAESAHATLESERAKSKSFLFSEEEFKSLQLQVREMNLLRESNMQLREENKHNFEECQKLREVAQKARTETDNLENVLREREIELEGCKKEIE 1333          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A067L032_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06909 PE=4 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.635e-62
Identity = 115/167 (68.86%), Postives = 143/167 (85.63%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGSALAES--SVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            LH R+EA+HIQ AEK+R SA   S  +V DSH D+GLQNV+NYLRR+K+IAETEISLLKQEK RLQ+QLE+ALKA E+A+A+L+AERANSRA+L++E+E KSL+ ++REMNLLRESNMQLREEN+HNFEECQKLREV    K +S+ +ES L E++ E+EA KKEIE
Sbjct: 1167 LHDRLEALHIQLAEKERNSAGISSRGTVSDSHDDAGLQNVVNYLRRSKEIAETEISLLKQEKHRLQTQLESALKAAETAQASLHAERANSRALLLSEEEKKSLELKVREMNLLRESNMQLREENQHNFEECQKLREVAQMAKAQSDKVESLLREKEIEIEACKKEIE 1333          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: B9RYK2_RICCO (Nucleoprotein TPR, putative OS=Ricinus communis GN=RCOM_1128370 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 6.860e-62
Identity = 117/167 (70.06%), Postives = 141/167 (84.43%), Query Frame = -2
Query:   25 LHSRIEAMHIQYAEKDRGSALAE--SSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519
            L +R+EA+HIQ AEK+R  A     S++ DSH D+GLQNVINYLRR+K+IA+TEISLLKQEKLRLQSQ  NALKA E+A+A+L+AERANS+A+L +E+EI SLQ Q+REMNLLRESN QLREENKHNFEECQKLREVV K ++ES+ LES L E Q E+EA KK+IE
Sbjct: 1176 LLNRLEALHIQLAEKERNVAGISFGSTISDSHSDAGLQNVINYLRRSKEIAQTEISLLKQEKLRLQSQ--NALKAAETAQASLHAERANSKALLFSEEEINSLQLQVREMNLLRESNTQLREENKHNFEECQKLREVVQKARVESDRLESLLREGQIEIEACKKKIE 1340          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: M4F208_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035105 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.021e-60
Identity = 113/175 (64.57%), Postives = 143/175 (81.71%), Query Frame = -2
Query:    1 LHSRIEAMHIQYAEKD-RGSALAESSV-PDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSR+EAMH++ AEKD R   L+  S+  D  GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK  ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV  K K +SE LE+ L ++Q E++    E+E+  +E ++
Sbjct: 1115 LHSRLEAMHLRSAEKDSRSGNLSSGSIDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1289          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D3D1T0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.408e-60
Identity = 113/175 (64.57%), Postives = 141/175 (80.57%), Query Frame = -2
Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSR+EAMH++ AEKD  S    S   DS   GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK  ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV  K K +SE LE+ L ++Q E++    E+E+  +E ++
Sbjct: 1162 LHSRLEAMHLRSAEKDSRSGNLSSGSTDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1336          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: G7IT80_MEDTR (Nuclear-pore anchor-like protein OS=Medicago truncatula GN=MTR_2g063480 PE=4 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.745e-60
Identity = 111/173 (64.16%), Postives = 142/173 (82.08%), Query Frame = -2
Query:    4 LHSRIEAMHIQYAEKDRGSA-LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLRERE 519
            LHS++EA+HIQ+AEK+R +A ++  S  D+ GD+GLQNV+NYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALK+ ESA A+L A+R  SR+ + TE+EIKSLQ Q+REMNLLRESNMQLREENKHNFEECQKLRE+  + +   + LE+ + ER+ E+E  KKEIE    E+E
Sbjct: 1167 LHSQLEALHIQWAEKERNAAGISPGSRGDTFGDAGLQNVVNYLRRSKEIAETEVSLLKQEKLRLQSQLESALKSAESAHASLEAQRVKSRSFMFTEEEIKSLQLQVREMNLLRESNMQLREENKHNFEECQKLRELAEQARTARDNLENLVRERESELEGQKKEIETLKTEKE 1339          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A078DH56_BRANA (BnaC06g39690D protein OS=Brassica napus GN=BnaC06g39690D PE=4 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.875e-60
Identity = 113/175 (64.57%), Postives = 141/175 (80.57%), Query Frame = -2
Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSR+EAMH++ AEKD  S    S   DS   GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK  ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV  K K +SE LE+ L ++Q E++    E+E+  +E ++
Sbjct: 1167 LHSRLEAMHLRSAEKDSRSGNLSSGNTDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1341          
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.908e-56
Identity = 105/168 (62.50%), Postives = 131/168 (77.98%), Query Frame = -2
Query:   22 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEK 519
            LHSR+EA H+  AEK+  S    S   DS    DSGLQ V++YLRRTK+IAETEISL++QEKLRLQSQLE+ALK  ESA+ +L AERA++RA L+T+D IKSLQ Q+ EMNLLRESNMQLREENKHNFE+CQ++REV  K ++ESE  E+ L  +Q E++   KE+EK
Sbjct: 1165 LHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEK 1332          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5X5Z7_PRUPE5.371e-6671.08Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9HI19_POPTR1.409e-6470.66Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7BVT9_PHAVU2.002e-6368.86Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
V7BX69_PHAVU2.188e-6368.86Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A067L032_JATCU1.635e-6268.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9RYK2_RICCO6.860e-6270.06Nucleoprotein TPR, putative OS=Ricinus communis GN... [more]
M4F208_BRARP1.021e-6064.57Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0D3D1T0_BRAOL1.408e-6064.57Uncharacterized protein OS=Brassica oleracea var. ... [more]
G7IT80_MEDTR1.745e-6064.16Nuclear-pore anchor-like protein OS=Medicago trunc... [more]
A0A078DH56_BRANA1.875e-6064.57BnaC06g39690D protein OS=Brassica napus GN=BnaC06g... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUA_ARATH2.908e-5662.50Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..87
NoneNo IPR availableCOILSCoilCoilcoord: 129..149
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
NoneNo IPR availablePANTHERPTHR18898NUCLEOPROTEIN TPR-RELATEDcoord: 2..172

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013881 ID=g.arboreum_cottongen_reftransV1_0013881; Name=g.arboreum_cottongen_reftransV1_0013881; organism=Gossypium arboreum; type=contig; length=520bp
GATCTCTCTCTCTCTCAGATGCTTTTCAATTTCCTTTTTAGAAGCTTCAA
CCTCAAATTGCCTCTCCATCAGCTGGCTCTCTAGAGCTTCAGATTCAATC
TTATGTTTATGAACCACCTCACGTAATTTCTGGCATTCCTCAAAATTGTG
CTTGTTCTCCTCTCTAAGCTGCATGTTGCTTTCACGGAGTAAATTCATTT
CCCTGATCTGGTGCTGTAAAGACTTGATCTCATCCTCTGTCATCAACACT
GCTCTTGAATTGGCACGCTCAGCATTAAGTGTGGCTTTGGCACTTTCTTC
TGCCTTAAGAGCATTCTCAAGTTGTGATTGCAACCGTAGCTTCTCCTGCT
TCAATAAAGATATCTCTGTTTCCGCTATTTGTTTTGTCCGTCGGAGGTAA
TTAATGACATTCTGCAAACCAGAATCACCATGTGAATCTGGAACAGAACT
TTCAGCAAGTGCAGAACCACGATCTTTCTCAGCATACTGAATATGCATAG
CTTCAATCCGGCTGTGCAAT
back to top