g.arboreum_cottongen_reftransV1_0013881, g.arboreum_cottongen_reftransV1_0013881 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: M5X5Z7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000061mg PE=4 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 5.371e-66 Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGS-ALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 LHS++EA+HIQ AE+DRGS + S+ D+ GD+GLQNVI+YLRRTK+IAETEISLLKQEKLRLQSQLE+ALKA E+A+++L+AERANSR++L TE+EIKSLQ Q+REMNLLRESN+QLREENKHNFEECQKLRE+ K IE++ LE L ERQ E+EA +KE+E Sbjct: 1147 LHSQLEALHIQLAERDRGSFGTSASTGSDTSGDAGLQNVISYLRRTKEIAETEISLLKQEKLRLQSQLESALKASETAQSSLHAERANSRSLLFTEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREISQKANIETQNLERLLRERQIELEACRKELE 1312
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: B9HI19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08040g PE=4 SV=2) HSP 1 Score: 226.483 bits (576), Expect = 1.409e-64 Identity = 118/167 (70.66%), Postives = 139/167 (83.23%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 LHSR+EA+HIQ AEKDR +A + S+ P D+GLQNV+NYLRR+K+IAETEISLLKQEKLRLQSQL+ ALKA E+A+A+L+ ERANSR +L +E+EIKSLQ Q+RE+ LLRESNMQLREENKHNFEECQKLREV K +S+ LES L ERQ EVEA KKEIE Sbjct: 1167 LHSRLEAIHIQLAEKDRNAAGISSGSNAPGLGSDAGLQNVVNYLRRSKEIAETEISLLKQEKLRLQSQLDGALKAAETAQASLHTERANSRTLLFSEEEIKSLQLQVRELTLLRESNMQLREENKHNFEECQKLREVAQNTKAQSDKLESLLRERQIEVEACKKEIE 1333
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: V7BVT9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G045700g PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 2.002e-63 Identity = 115/167 (68.86%), Postives = 139/167 (83.23%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 LHS++EA HI++AEK+R +A + SS D+ GD GLQNVINYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALKA ESA ATL +ERA S++ L +E+E KSLQ Q+REMNLLRESNMQLREENKHNFEECQKLREV K + E++ LE+ L ER+ E+E KKEIE Sbjct: 1164 LHSQLEAFHIRWAEKERNAAGISSGSSTADAFGDGGLQNVINYLRRSKEIAETEVSLLKQEKLRLQSQLESALKAAESAHATLESERAKSKSFLFSEEEFKSLQLQVREMNLLRESNMQLREENKHNFEECQKLREVAQKARTETDNLENVLREREIELEGCKKEIE 1330
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: V7BX69_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G045700g PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 2.188e-63 Identity = 115/167 (68.86%), Postives = 139/167 (83.23%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 LHS++EA HI++AEK+R +A + SS D+ GD GLQNVINYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALKA ESA ATL +ERA S++ L +E+E KSLQ Q+REMNLLRESNMQLREENKHNFEECQKLREV K + E++ LE+ L ER+ E+E KKEIE Sbjct: 1167 LHSQLEAFHIRWAEKERNAAGISSGSSTADAFGDGGLQNVINYLRRSKEIAETEVSLLKQEKLRLQSQLESALKAAESAHATLESERAKSKSFLFSEEEFKSLQLQVREMNLLRESNMQLREENKHNFEECQKLREVAQKARTETDNLENVLREREIELEGCKKEIE 1333
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A067L032_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06909 PE=4 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 1.635e-62 Identity = 115/167 (68.86%), Postives = 143/167 (85.63%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGSALAES--SVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 LH R+EA+HIQ AEK+R SA S +V DSH D+GLQNV+NYLRR+K+IAETEISLLKQEK RLQ+QLE+ALKA E+A+A+L+AERANSRA+L++E+E KSL+ ++REMNLLRESNMQLREEN+HNFEECQKLREV K +S+ +ES L E++ E+EA KKEIE Sbjct: 1167 LHDRLEALHIQLAEKERNSAGISSRGTVSDSHDDAGLQNVVNYLRRSKEIAETEISLLKQEKHRLQTQLESALKAAETAQASLHAERANSRALLLSEEEKKSLELKVREMNLLRESNMQLREENQHNFEECQKLREVAQMAKAQSDKVESLLREKEIEIEACKKEIE 1333
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: B9RYK2_RICCO (Nucleoprotein TPR, putative OS=Ricinus communis GN=RCOM_1128370 PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 6.860e-62 Identity = 117/167 (70.06%), Postives = 141/167 (84.43%), Query Frame = -2 Query: 25 LHSRIEAMHIQYAEKDRGSALAE--SSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIE 519 L +R+EA+HIQ AEK+R A S++ DSH D+GLQNVINYLRR+K+IA+TEISLLKQEKLRLQSQ NALKA E+A+A+L+AERANS+A+L +E+EI SLQ Q+REMNLLRESN QLREENKHNFEECQKLREVV K ++ES+ LES L E Q E+EA KK+IE Sbjct: 1176 LLNRLEALHIQLAEKERNVAGISFGSTISDSHSDAGLQNVINYLRRSKEIAQTEISLLKQEKLRLQSQ--NALKAAETAQASLHAERANSKALLFSEEEINSLQLQVREMNLLRESNTQLREENKHNFEECQKLREVVQKARVESDRLESLLREGQIEIEACKKKIE 1340
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: M4F208_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035105 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.021e-60 Identity = 113/175 (64.57%), Postives = 143/175 (81.71%), Query Frame = -2 Query: 1 LHSRIEAMHIQYAEKD-RGSALAESSV-PDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519 LHSR+EAMH++ AEKD R L+ S+ D GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV K K +SE LE+ L ++Q E++ E+E+ +E ++ Sbjct: 1115 LHSRLEAMHLRSAEKDSRSGNLSSGSIDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1289
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D3D1T0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.408e-60 Identity = 113/175 (64.57%), Postives = 141/175 (80.57%), Query Frame = -2 Query: 1 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519 LHSR+EAMH++ AEKD S S DS GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV K K +SE LE+ L ++Q E++ E+E+ +E ++ Sbjct: 1162 LHSRLEAMHLRSAEKDSRSGNLSSGSTDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1336
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: G7IT80_MEDTR (Nuclear-pore anchor-like protein OS=Medicago truncatula GN=MTR_2g063480 PE=4 SV=2) HSP 1 Score: 214.927 bits (546), Expect = 1.745e-60 Identity = 111/173 (64.16%), Postives = 142/173 (82.08%), Query Frame = -2 Query: 4 LHSRIEAMHIQYAEKDRGSA-LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLRERE 519 LHS++EA+HIQ+AEK+R +A ++ S D+ GD+GLQNV+NYLRR+K+IAETE+SLLKQEKLRLQSQLE+ALK+ ESA A+L A+R SR+ + TE+EIKSLQ Q+REMNLLRESNMQLREENKHNFEECQKLRE+ + + + LE+ + ER+ E+E KKEIE E+E Sbjct: 1167 LHSQLEALHIQWAEKERNAAGISPGSRGDTFGDAGLQNVVNYLRRSKEIAETEVSLLKQEKLRLQSQLESALKSAESAHASLEAQRVKSRSFMFTEEEIKSLQLQVREMNLLRESNMQLREENKHNFEECQKLRELAEQARTARDNLENLVRERESELEGQKKEIETLKTEKE 1339
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A078DH56_BRANA (BnaC06g39690D protein OS=Brassica napus GN=BnaC06g39690D PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.875e-60 Identity = 113/175 (64.57%), Postives = 141/175 (80.57%), Query Frame = -2 Query: 1 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519 LHSR+EAMH++ AEKD S S DS GDSGLQ+V+NYLRRTK+IAETEISL++QEKLRLQSQLE+ALK ESA+ +LNAERA++RA L+TEDEIKSLQ Q+ E+NLLRESNMQLREENKHNFEECQ+LREV K K +SE LE+ L ++Q E++ E+E+ +E ++ Sbjct: 1167 LHSRLEAMHLRSAEKDSRSGNLSSGNTDSDQLGDSGLQSVVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDEIKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTELDLCISEMERLRKESDL 1341
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 2.908e-56 Identity = 105/168 (62.50%), Postives = 131/168 (77.98%), Query Frame = -2 Query: 22 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEK 519 LHSR+EA H+ AEK+ S S DS DSGLQ V++YLRRTK+IAETEISL++QEKLRLQSQLE+ALK ESA+ +L AERA++RA L+T+D IKSLQ Q+ EMNLLRESNMQLREENKHNFE+CQ++REV K ++ESE E+ L +Q E++ KE+EK Sbjct: 1165 LHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEK 1332 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013881 ID=g.arboreum_cottongen_reftransV1_0013881; Name=g.arboreum_cottongen_reftransV1_0013881; organism=Gossypium arboreum; type=contig; length=520bpback to top |