g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009137
Unique Nameg.arboreum_cottongen_reftransV1_0009137
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length413
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M5W3M6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001201mg PE=4 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.189e-63
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N  +S SQFEAHAG+ SRRKP+  IYTSNGVSLHEL++SLS+NRK ST +NDDLCS+C DGG+LLCCD CPRAFH EC+SLP +P GTW+C+ CQ+ F++EKFVE NANA+AAGRVAG+DPIEQIT R IRI+ T E
Sbjct:  487 NDVVSASQFEAHAGFASRRKPYLFIYTSNGVSLHELALSLSRNRKSSTKKNDDLCSMCRDGGDLLCCDNCPRAFHKECLSLPSVPEGTWYCKQCQSMFEREKFVEHNANAVAAGRVAGVDPIEQITNRCIRIVTTFE 623          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: G7L4X9_MEDTR (PHD zinc finger protein OS=Medicago truncatula GN=MTR_7g102610 PE=4 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.781e-63
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIK 403
            N+EISPSQFE HAGW SR+KP+  IYTSNGVSLHELSISLSK+RK+S  +NDDLC +C DGGNLL CD CPRAFH EC SL  IP G W+C++CQN FQ+EKFV  N NA AAGRV G+DPIEQITKR IRI+K
Sbjct:  538 NTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVK 671          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061F0H4_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2 OS=Theobroma cacao GN=TCM_022344 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.951e-63
Identity = 98/137 (71.53%), Postives = 111/137 (81.02%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N E+SPSQFEAHAGW SRRKP+  IYTSNGVSLHEL+ISLSK R++S  +NDD C IC DGGNLL CD CPRAFH EC SLP IP G W+C+YCQN F +EKFVE NANA+AAGR+ G+D IEQIT R IRI+K  E
Sbjct:  654 NCEVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIE 790          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A5BTW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009664 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.312e-62
Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 2
Query:    8 EISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            E+S SQFEAHAGW SR+KP+  IYTSNGVSLHEL+ISLSK RK+S  +NDDLCSIC DGGNLL CD CPRAFH  C SLP IP   W+CRYCQN FQ+EKFVE NANA+AAGRV+G+DPIEQITKR IRI+  PE
Sbjct: 2030 EVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIV-NPE 2163          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0A0LB69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745020 PE=4 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.851e-62
Identity = 98/137 (71.53%), Postives = 112/137 (81.75%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N  +SPSQFE HAGW SR+KP+  IYTSNGVSLHEL+ISLSK RK+S  +NDDLC ICLDGGNLL CD CPRAFH EC SL  IP G W+C++CQN FQ+EKFVE N NA+AAGRV G+DPIEQITKR IRI++  E
Sbjct:  518 NCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIE 654          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_RAT (Chromodomain-helicase-DNA-binding protein 5 OS=Rattus norvegicus GN=Chd5 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.330e-10
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            + C +C DGG LLCCD CP ++HL C++  LP IP G W C  C
Sbjct:  415 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 458          

HSP 2 Score: 60.077 bits (144), Expect = 1.275e-9
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+HL C+   L + P G W C +C+
Sbjct:  336 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 386          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.352e-10
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            + C +C DGG LLCCD CP ++HL C++  LP IP G W C  C
Sbjct:  417 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 460          

HSP 2 Score: 60.077 bits (144), Expect = 1.287e-9
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+HL C+   L + P G W C +C+
Sbjct:  338 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 388          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_MOUSE (Chromodomain-helicase-DNA-binding protein 5 OS=Mus musculus GN=Chd5 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.669e-10
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            + C +C DGG LLCCD CP ++HL C++  LP IP G W C  C
Sbjct:  419 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 462          

HSP 2 Score: 59.6918 bits (143), Expect = 1.472e-9
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+HL C+   L + P G W C +C+
Sbjct:  340 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 390          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_HUMAN (E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 3.312e-10
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKEKFVERNANAL---AAGRVA-GIDPIEQ 373
            N+D C++C +GG+LLCC+ CP+ FHL C   +L   P G W C +C++  + E  VE + + L     G+ A G+ P++Q
Sbjct:  886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE--VEYDCDNLQHSKKGKTAQGLSPVDQ 963          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_MOUSE (E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 4.287e-10
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE-KFVERNANALAAGRVA-GIDPIEQ 373
            N+D C++C +GG+LLCC+ CP+ FHL C   +L   P G W C +C++  + E ++   N      G+ A G+ P++Q
Sbjct:  901 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTAQGLSPVDQ 978          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 7.249e-10
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+HL C+   L R P G W C +C+
Sbjct:  374 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCE 424          

HSP 2 Score: 55.4546 bits (132), Expect = 3.654e-8
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 2
Query:  158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            + C +C DGG LLCCD C  ++H+ C++  LP IP G W C  C
Sbjct:  457 EYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRC 500          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_DANRE (E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.290e-9
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            N+D C++C +GG LLCCD CP+ FH+ C   +L   P G W C +C+N    E
Sbjct:  920 NEDWCAVCQNGGELLCCDHCPKVFHITCHIPTLKSSPSGDWMCTFCRNLANPE 972          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TIF1A_HUMAN (Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 3.299e-9
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKEKFVERNANALA----AGRVAGIDPIEQITKR 385
            N+D C++C +GG LLCC+ CP+ FHL C   +L   P G W C +C++  + E  VE + +A +      +  G+  +  I KR
Sbjct:  825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE--VEYDCDAPSHNSEKKKTEGLVKLTPIDKR 906          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TIF1A_MOUSE (Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.993e-9
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            N+D C++C +GG LLCC+ CP+ FHL C   +L   P G W C +C++  + E
Sbjct:  826 NEDWCAVCQNGGELLCCEKCPKVFHLTCHVPTLTNFPSGEWICTFCRDLSKPE 878          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.442e-9
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRS 388
            ++R+     N D C  C +GG+LLCCD CP AFHL+C + P     +P G W C  C  T +++K  ++       G V G+  +++ +KR+
Sbjct:   46 ESRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC--TVRRKKREQKK----ELGHVNGL--VDKSSKRT 129          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5W3M6_PRUPE1.189e-6371.53Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
G7L4X9_MEDTR6.781e-6373.13PHD zinc finger protein OS=Medicago truncatula GN=... [more]
A0A061F0H4_THECC6.951e-6371.53Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type... [more]
A5BTW5_VITVI1.312e-6274.81Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LB69_CUCSA1.851e-6271.53Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHD5_RAT2.330e-1052.27Chromodomain-helicase-DNA-binding protein 5 OS=Rat... [more]
CHD5_HUMAN2.352e-1052.27Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
CHD5_MOUSE2.669e-1052.27Chromodomain-helicase-DNA-binding protein 5 OS=Mus... [more]
TRI33_HUMAN3.312e-1038.75E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens... [more]
TRI33_MOUSE4.287e-1037.18E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus... [more]
CHD3_HUMAN7.249e-1049.02Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
TRI33_DANRE1.290e-945.28E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio ... [more]
TIF1A_HUMAN3.299e-935.71Transcription intermediary factor 1-alpha OS=Homo ... [more]
TIF1A_MOUSE4.993e-943.40Transcription intermediary factor 1-alpha OS=Mus m... [more]
PHF12_MOUSE5.442e-934.78PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 19..60
e-value: 3.2E-10
score: 50.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 6..67
e-value: 2.5E-18
score: 64.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 20..61
e-value: 2.1E-8
score: 33.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 17..62
score: 10.033
NoneNo IPR availablePANTHERPTHR24098:SF5ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 1..67
NoneNo IPR availablePANTHERPTHR24098FAMILY NOT NAMEDcoord: 1..67
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 20..59
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 8..65

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bp
TAATTCAGAGATAAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGCCAA
GTCGTCGCAAGCCTTTTCAAAACATTTACACATCAAATGGGGTATCTCTT
CATGAATTGTCAATATCCCTGTCGAAAAATCGGAAGTTCTCTACATATGA
GAATGATGACCTATGCAGCATCTGTTTGGATGGAGGGAATCTATTGTGTT
GTGACACATGTCCAAGGGCTTTTCACTTAGAGTGTATATCTCTTCCACGC
ATTCCAATTGGTACTTGGCACTGTAGATATTGCCAGAATACCTTCCAAAA
GGAAAAGTTTGTGGAACGTAATGCCAATGCTCTAGCTGCTGGAAGAGTTG
CGGGAATTGATCCAATAGAACAGATAACAAAGAGATCCATTCGAATCATC
AAAACTCCTGAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding