g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M5W3M6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001201mg PE=4 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 1.189e-63 Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N +S SQFEAHAG+ SRRKP+ IYTSNGVSLHEL++SLS+NRK ST +NDDLCS+C DGG+LLCCD CPRAFH EC+SLP +P GTW+C+ CQ+ F++EKFVE NANA+AAGRVAG+DPIEQIT R IRI+ T E Sbjct: 487 NDVVSASQFEAHAGFASRRKPYLFIYTSNGVSLHELALSLSRNRKSSTKKNDDLCSMCRDGGDLLCCDNCPRAFHKECLSLPSVPEGTWYCKQCQSMFEREKFVEHNANAVAAGRVAGVDPIEQITNRCIRIVTTFE 623
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: G7L4X9_MEDTR (PHD zinc finger protein OS=Medicago truncatula GN=MTR_7g102610 PE=4 SV=2) HSP 1 Score: 216.853 bits (551), Expect = 6.781e-63 Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIK 403 N+EISPSQFE HAGW SR+KP+ IYTSNGVSLHELSISLSK+RK+S +NDDLC +C DGGNLL CD CPRAFH EC SL IP G W+C++CQN FQ+EKFV N NA AAGRV G+DPIEQITKR IRI+K Sbjct: 538 NTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVK 671
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061F0H4_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2 OS=Theobroma cacao GN=TCM_022344 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 6.951e-63 Identity = 98/137 (71.53%), Postives = 111/137 (81.02%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N E+SPSQFEAHAGW SRRKP+ IYTSNGVSLHEL+ISLSK R++S +NDD C IC DGGNLL CD CPRAFH EC SLP IP G W+C+YCQN F +EKFVE NANA+AAGR+ G+D IEQIT R IRI+K E Sbjct: 654 NCEVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIE 790
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A5BTW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009664 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.312e-62 Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 2 Query: 8 EISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 E+S SQFEAHAGW SR+KP+ IYTSNGVSLHEL+ISLSK RK+S +NDDLCSIC DGGNLL CD CPRAFH C SLP IP W+CRYCQN FQ+EKFVE NANA+AAGRV+G+DPIEQITKR IRI+ PE Sbjct: 2030 EVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIV-NPE 2163
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0A0LB69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745020 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.851e-62 Identity = 98/137 (71.53%), Postives = 112/137 (81.75%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N +SPSQFE HAGW SR+KP+ IYTSNGVSLHEL+ISLSK RK+S +NDDLC ICLDGGNLL CD CPRAFH EC SL IP G W+C++CQN FQ+EKFVE N NA+AAGRV G+DPIEQITKR IRI++ E Sbjct: 518 NCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIE 654
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_RAT (Chromodomain-helicase-DNA-binding protein 5 OS=Rattus norvegicus GN=Chd5 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.330e-10 Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 Query: 158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 + C +C DGG LLCCD CP ++HL C++ LP IP G W C C Sbjct: 415 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 458 HSP 2 Score: 60.077 bits (144), Expect = 1.275e-9 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+HL C+ L + P G W C +C+ Sbjct: 336 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 386
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.352e-10 Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 Query: 158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 + C +C DGG LLCCD CP ++HL C++ LP IP G W C C Sbjct: 417 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 460 HSP 2 Score: 60.077 bits (144), Expect = 1.287e-9 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+HL C+ L + P G W C +C+ Sbjct: 338 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 388
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD5_MOUSE (Chromodomain-helicase-DNA-binding protein 5 OS=Mus musculus GN=Chd5 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.669e-10 Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 Query: 158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 + C +C DGG LLCCD CP ++HL C++ LP IP G W C C Sbjct: 419 EFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 462 HSP 2 Score: 59.6918 bits (143), Expect = 1.472e-9 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+HL C+ L + P G W C +C+ Sbjct: 340 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCE 390
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_HUMAN (E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=3) HSP 1 Score: 61.6178 bits (148), Expect = 3.312e-10 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKEKFVERNANAL---AAGRVA-GIDPIEQ 373 N+D C++C +GG+LLCC+ CP+ FHL C +L P G W C +C++ + E VE + + L G+ A G+ P++Q Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE--VEYDCDNLQHSKKGKTAQGLSPVDQ 963
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_MOUSE (E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 4.287e-10 Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE-KFVERNANALAAGRVA-GIDPIEQ 373 N+D C++C +GG+LLCC+ CP+ FHL C +L P G W C +C++ + E ++ N G+ A G+ P++Q Sbjct: 901 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTAQGLSPVDQ 978
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 60.8474 bits (146), Expect = 7.249e-10 Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+HL C+ L R P G W C +C+ Sbjct: 374 YETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCE 424 HSP 2 Score: 55.4546 bits (132), Expect = 3.654e-8 Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 2 Query: 158 DLCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 + C +C DGG LLCCD C ++H+ C++ LP IP G W C C Sbjct: 457 EYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRC 500
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_DANRE (E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.290e-9 Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 N+D C++C +GG LLCCD CP+ FH+ C +L P G W C +C+N E Sbjct: 920 NEDWCAVCQNGGELLCCDHCPKVFHITCHIPTLKSSPSGDWMCTFCRNLANPE 972
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TIF1A_HUMAN (Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3) HSP 1 Score: 58.5362 bits (140), Expect = 3.299e-9 Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKEKFVERNANALA----AGRVAGIDPIEQITKR 385 N+D C++C +GG LLCC+ CP+ FHL C +L P G W C +C++ + E VE + +A + + G+ + I KR Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE--VEYDCDAPSHNSEKKKTEGLVKLTPIDKR 906
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TIF1A_MOUSE (Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.993e-9 Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 N+D C++C +GG LLCC+ CP+ FHL C +L P G W C +C++ + E Sbjct: 826 NEDWCAVCQNGGELLCCEKCPKVFHLTCHVPTLTNFPSGEWICTFCRDLSKPE 878
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 5.442e-9 Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 2 Query: 125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRS 388 ++R+ N D C C +GG+LLCCD CP AFHL+C + P +P G W C C T +++K ++ G V G+ +++ +KR+ Sbjct: 46 ESRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC--TVRRKKREQKK----ELGHVNGL--VDKSSKRT 129 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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