g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009137
Unique Nameg.arboreum_cottongen_reftransV1_0009137
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length413
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M5W3M6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001201mg PE=4 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.189e-63
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N  +S SQFEAHAG+ SRRKP+  IYTSNGVSLHEL++SLS+NRK ST +NDDLCS+C DGG+LLCCD CPRAFH EC+SLP +P GTW+C+ CQ+ F++EKFVE NANA+AAGRVAG+DPIEQIT R IRI+ T E
Sbjct:  487 NDVVSASQFEAHAGFASRRKPYLFIYTSNGVSLHELALSLSRNRKSSTKKNDDLCSMCRDGGDLLCCDNCPRAFHKECLSLPSVPEGTWYCKQCQSMFEREKFVEHNANAVAAGRVAGVDPIEQITNRCIRIVTTFE 623          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: G7L4X9_MEDTR (PHD zinc finger protein OS=Medicago truncatula GN=MTR_7g102610 PE=4 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.781e-63
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIK 403
            N+EISPSQFE HAGW SR+KP+  IYTSNGVSLHELSISLSK+RK+S  +NDDLC +C DGGNLL CD CPRAFH EC SL  IP G W+C++CQN FQ+EKFV  N NA AAGRV G+DPIEQITKR IRI+K
Sbjct:  538 NTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVK 671          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061F0H4_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2 OS=Theobroma cacao GN=TCM_022344 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.951e-63
Identity = 98/137 (71.53%), Postives = 111/137 (81.02%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N E+SPSQFEAHAGW SRRKP+  IYTSNGVSLHEL+ISLSK R++S  +NDD C IC DGGNLL CD CPRAFH EC SLP IP G W+C+YCQN F +EKFVE NANA+AAGR+ G+D IEQIT R IRI+K  E
Sbjct:  654 NCEVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIE 790          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A5BTW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009664 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.312e-62
Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 2
Query:    8 EISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            E+S SQFEAHAGW SR+KP+  IYTSNGVSLHEL+ISLSK RK+S  +NDDLCSIC DGGNLL CD CPRAFH  C SLP IP   W+CRYCQN FQ+EKFVE NANA+AAGRV+G+DPIEQITKR IRI+  PE
Sbjct: 2030 EVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIV-NPE 2163          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0A0LB69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745020 PE=4 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.851e-62
Identity = 98/137 (71.53%), Postives = 112/137 (81.75%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            N  +SPSQFE HAGW SR+KP+  IYTSNGVSLHEL+ISLSK RK+S  +NDDLC ICLDGGNLL CD CPRAFH EC SL  IP G W+C++CQN FQ+EKFVE N NA+AAGRV G+DPIEQITKR IRI++  E
Sbjct:  518 NCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIE 654          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.017e-13
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC-QNTFQK 301
            +N+D C++C DGG L+CCD CPRAFHL C+S P   IP GTW C  C Q T Q+
Sbjct:  294 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: IDM1_ARATH (Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.866e-12
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNG-----VSLHELSISLSKNRKFSTYE-------NDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYC 283
            N  +S S+F+ HAG+ ++  P  N++  +G       L   S      R     E       NDD C +C DGG L+CCD CP  FH  C+S+  +P G+W+C  C
Sbjct:  664 NKTVSLSEFKNHAGF-NQNCPCLNLFMGSGKPFASCQLEAWSAEYKARRNGWRLEKASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.570e-12
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC------QNTFQKE 304
            +N+D C++C DGG L+CCD CPRAFHL C+S P   IP G W C  C      QN  Q E
Sbjct:  296 KNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQGRVQQNLSQPE 355          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_HUMAN (Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=4)

HSP 1 Score: 64.6994 bits (156), Expect = 3.712e-11
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2
Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            EN+D C++CL+GG LLCCD CP+ FHL C   +L   P G W C  C++  Q E
Sbjct:  968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1021          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: RCO1_YEAST (Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.925e-11
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQ 286
            KN     +EN+D CS C   G+ LCCDTCP++FH  C+  P     +P G WHC  C+
Sbjct:  250 KNNSTIDFENEDFCSACNQSGSFLCCDTCPKSFHFLCLDPPIDPNNLPKGDWHCNECK 307          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            E DD     C +C DGG LLCCDTCP ++H+ C++  LP IP G W C  C
Sbjct:  443 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 493          

HSP 2 Score: 58.151 bits (139), Expect = 4.892e-9
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+H+ C+   + + P G W C +C+
Sbjct:  365 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 415          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            E DD     C +C DGG LLCCDTCP ++H+ C++  LP IP G W C  C
Sbjct:  436 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 486          

HSP 2 Score: 60.077 bits (144), Expect = 1.081e-9
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 2
Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQ 373
            YE D  D C +C  GG ++ CDTCPRA+H+ C+   + + P G W C +C+    + +  E N+         G DP E+
Sbjct:  358 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEE 437          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 1.451e-10
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2
Query:  128 NRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283
            N K   + +++ C +C DGG+LLCCD+CP  +H  C+S P   IP G W C  C
Sbjct:   26 NAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_MOUSE (Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.717e-10
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 2
Query:  122 SKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            +K    +  EN+D C++C++GG LLCCD CP+ +HL C   +L   P G W C  C++  Q E
Sbjct:  985 AKKNTPAPIENEDFCAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1047          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_XENLA (E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.832e-10
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQ--NTFQKEKFVERNANALAAGRVAGIDPIEQI 376
            N+D C++C +GG+LLCC+ CP+ FHL C   +L   P G W C +C+  N  + E   + + ++     V G+ P++Q+
Sbjct:  849 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPEVEYDCDNSQHSKKGKTVQGLSPVDQM 927          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5W3M6_PRUPE1.189e-6371.53Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
G7L4X9_MEDTR6.781e-6373.13PHD zinc finger protein OS=Medicago truncatula GN=... [more]
A0A061F0H4_THECC6.951e-6371.53Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type... [more]
A5BTW5_VITVI1.312e-6274.81Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LB69_CUCSA1.851e-6271.53Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
AIRE_HUMAN3.017e-1357.41Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ... [more]
IDM1_ARATH1.866e-1234.91Increased DNA methylation 1 OS=Arabidopsis thalian... [more]
AIRE_MOUSE8.570e-1251.67Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ... [more]
TRI66_HUMAN3.712e-1150.00Tripartite motif-containing protein 66 OS=Homo sap... [more]
RCO1_YEAST3.925e-1144.83Transcriptional regulatory protein RCO1 OS=Sacchar... [more]
CHD4_HUMAN1.154e-1050.98Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHD4_MOUSE1.154e-1050.98Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD3_DROME1.451e-1044.44Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
TRI66_MOUSE1.717e-1041.27Tripartite motif-containing protein 66 OS=Mus musc... [more]
TRI33_XENLA1.832e-1035.44E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laev... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 19..60
e-value: 3.2E-10
score: 50.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 6..67
e-value: 2.5E-18
score: 64.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 20..61
e-value: 2.1E-8
score: 33.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 17..62
score: 10.033
NoneNo IPR availablePANTHERPTHR24098:SF5ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 1..67
NoneNo IPR availablePANTHERPTHR24098FAMILY NOT NAMEDcoord: 1..67
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 20..59
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 8..65

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bp
TAATTCAGAGATAAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGCCAA
GTCGTCGCAAGCCTTTTCAAAACATTTACACATCAAATGGGGTATCTCTT
CATGAATTGTCAATATCCCTGTCGAAAAATCGGAAGTTCTCTACATATGA
GAATGATGACCTATGCAGCATCTGTTTGGATGGAGGGAATCTATTGTGTT
GTGACACATGTCCAAGGGCTTTTCACTTAGAGTGTATATCTCTTCCACGC
ATTCCAATTGGTACTTGGCACTGTAGATATTGCCAGAATACCTTCCAAAA
GGAAAAGTTTGTGGAACGTAATGCCAATGCTCTAGCTGCTGGAAGAGTTG
CGGGAATTGATCCAATAGAACAGATAACAAAGAGATCCATTCGAATCATC
AAAACTCCTGAGA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding