g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M5W3M6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001201mg PE=4 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 1.189e-63 Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N +S SQFEAHAG+ SRRKP+ IYTSNGVSLHEL++SLS+NRK ST +NDDLCS+C DGG+LLCCD CPRAFH EC+SLP +P GTW+C+ CQ+ F++EKFVE NANA+AAGRVAG+DPIEQIT R IRI+ T E Sbjct: 487 NDVVSASQFEAHAGFASRRKPYLFIYTSNGVSLHELALSLSRNRKSSTKKNDDLCSMCRDGGDLLCCDNCPRAFHKECLSLPSVPEGTWYCKQCQSMFEREKFVEHNANAVAAGRVAGVDPIEQITNRCIRIVTTFE 623
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: G7L4X9_MEDTR (PHD zinc finger protein OS=Medicago truncatula GN=MTR_7g102610 PE=4 SV=2) HSP 1 Score: 216.853 bits (551), Expect = 6.781e-63 Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIK 403 N+EISPSQFE HAGW SR+KP+ IYTSNGVSLHELSISLSK+RK+S +NDDLC +C DGGNLL CD CPRAFH EC SL IP G W+C++CQN FQ+EKFV N NA AAGRV G+DPIEQITKR IRI+K Sbjct: 538 NTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVK 671
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061F0H4_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2 OS=Theobroma cacao GN=TCM_022344 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 6.951e-63 Identity = 98/137 (71.53%), Postives = 111/137 (81.02%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N E+SPSQFEAHAGW SRRKP+ IYTSNGVSLHEL+ISLSK R++S +NDD C IC DGGNLL CD CPRAFH EC SLP IP G W+C+YCQN F +EKFVE NANA+AAGR+ G+D IEQIT R IRI+K E Sbjct: 654 NCEVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIE 790
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A5BTW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009664 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.312e-62 Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 2 Query: 8 EISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 E+S SQFEAHAGW SR+KP+ IYTSNGVSLHEL+ISLSK RK+S +NDDLCSIC DGGNLL CD CPRAFH C SLP IP W+CRYCQN FQ+EKFVE NANA+AAGRV+G+DPIEQITKR IRI+ PE Sbjct: 2030 EVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIV-NPE 2163
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0A0LB69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745020 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.851e-62 Identity = 98/137 (71.53%), Postives = 112/137 (81.75%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N +SPSQFE HAGW SR+KP+ IYTSNGVSLHEL+ISLSK RK+S +NDDLC ICLDGGNLL CD CPRAFH EC SL IP G W+C++CQN FQ+EKFVE N NA+AAGRV G+DPIEQITKR IRI++ E Sbjct: 518 NCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIE 654
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.017e-13 Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC-QNTFQK 301 +N+D C++C DGG L+CCD CPRAFHL C+S P IP GTW C C Q T Q+ Sbjct: 294 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: IDM1_ARATH (Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.866e-12 Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNG-----VSLHELSISLSKNRKFSTYE-------NDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYC 283 N +S S+F+ HAG+ ++ P N++ +G L S R E NDD C +C DGG L+CCD CP FH C+S+ +P G+W+C C Sbjct: 664 NKTVSLSEFKNHAGF-NQNCPCLNLFMGSGKPFASCQLEAWSAEYKARRNGWRLEKASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.570e-12 Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC------QNTFQKE 304 +N+D C++C DGG L+CCD CPRAFHL C+S P IP G W C C QN Q E Sbjct: 296 KNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQGRVQQNLSQPE 355
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_HUMAN (Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=4) HSP 1 Score: 64.6994 bits (156), Expect = 3.712e-11 Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 EN+D C++CL+GG LLCCD CP+ FHL C +L P G W C C++ Q E Sbjct: 968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1021
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: RCO1_YEAST (Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.925e-11 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 2 Query: 125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQ 286 KN +EN+D CS C G+ LCCDTCP++FH C+ P +P G WHC C+ Sbjct: 250 KNNSTIDFENEDFCSACNQSGSFLCCDTCPKSFHFLCLDPPIDPNNLPKGDWHCNECK 307
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 E DD C +C DGG LLCCDTCP ++H+ C++ LP IP G W C C Sbjct: 443 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 493 HSP 2 Score: 58.151 bits (139), Expect = 4.892e-9 Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+H+ C+ + + P G W C +C+ Sbjct: 365 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 415
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 E DD C +C DGG LLCCDTCP ++H+ C++ LP IP G W C C Sbjct: 436 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 486 HSP 2 Score: 60.077 bits (144), Expect = 1.081e-9 Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQ 373 YE D D C +C GG ++ CDTCPRA+H+ C+ + + P G W C +C+ + + E N+ G DP E+ Sbjct: 358 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEE 437
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 62.7734 bits (151), Expect = 1.451e-10 Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2 Query: 128 NRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283 N K + +++ C +C DGG+LLCCD+CP +H C+S P IP G W C C Sbjct: 26 NAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_MOUSE (Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1 SV=3) HSP 1 Score: 62.3882 bits (150), Expect = 1.717e-10 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 122 SKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 +K + EN+D C++C++GG LLCCD CP+ +HL C +L P G W C C++ Q E Sbjct: 985 AKKNTPAPIENEDFCAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1047
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_XENLA (E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.832e-10 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQ--NTFQKEKFVERNANALAAGRVAGIDPIEQI 376 N+D C++C +GG+LLCC+ CP+ FHL C +L P G W C +C+ N + E + + ++ V G+ P++Q+ Sbjct: 849 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPEVEYDCDNSQHSKKGKTVQGLSPVDQM 927 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|