g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A059DB74_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03919 PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.810e-70 Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 +S +SPSQFEAHAGWP+RRKP+ NIYTSNGVSLHEL+ISLS++R+ ST ENDDLCSIC DGG+LLCCDTCPRAFHLECISL RIP +W+CRYCQN Q EK VE N NALAAGRVAG DPIEQITKR IRI+KT E Sbjct: 684 DSLVSPSQFEAHAGWPTRRKPYLNIYTSNGVSLHELAISLSRSRRLSTNENDDLCSICFDGGDLLCCDTCPRAFHLECISLSRIPKDSWNCRYCQNIHQMEKLVEHNVNALAAGRVAGADPIEQITKRCIRIVKTLE 820
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: B9HQQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00930g PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 8.109e-70 Identity = 107/137 (78.10%), Postives = 120/137 (87.59%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N+E+SPSQFEAHAGW SRRKP+ +IYTSNGVSLHEL+ISLSK R+ ST ENDDLC IC DGG LLCCD CPRAFH EC+SLP IP G W+C+YC NTF+KEKFVERNANA+AAGRVAG DPIEQIT+R IRI+KT E Sbjct: 525 NTEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELAISLSKCRRHSTKENDDLCQICRDGGKLLCCDVCPRAFHQECLSLPSIPKGKWYCKYCLNTFEKEKFVERNANAIAAGRVAGTDPIEQITRRCIRIVKTFE 661
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: B9SCL9_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0475450 PE=4 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 8.023e-69 Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406 N+E+SPSQFEAHAGW SRRKP+ +IYTSNGVSLHEL+ISLSK+RKFST++NDDLC IC DGG+LLCCD CPRA+H +C++LP IP G W+C++C N FQKEKFVE NANA+AAGRVAG+DPI+QIT+R IRI+KT Sbjct: 617 NTEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELAISLSKSRKFSTHQNDDLCQICRDGGDLLCCDVCPRAYHKDCLALPEIPTGRWYCKFCLNNFQKEKFVEHNANAIAAGRVAGVDPIDQITRRCIRIVKT 751
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0A0KBK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148350 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.073e-68 Identity = 106/137 (77.37%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKP+ +IYTSNGVSLHELSISLSK RKFS +NDDLCSIC DGG+LLCCD CPR+FH +C+ L IP G W+C+YCQN FQKEKFVE NANA+AAGRVAG+DPIEQIT R IRI+KT E Sbjct: 549 NSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKGRKFSLTDNDDLCSICADGGDLLCCDGCPRSFHRDCVPLQCIPTGIWYCKYCQNLFQKEKFVEHNANAVAAGRVAGVDPIEQITTRCIRIVKTME 685
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: D7SN93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00840 PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.895e-66 Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406 NSE+SPSQFEAHAGW SRRKP+ +IYTSNGVSLHE SISLS+ R+ S +NDDLCSICLDGGNLLCCD CPR FH EC+SL IP G W C++C N QKEKFVE NANA+AAGRVAG+DPIEQITKR IRI+ T Sbjct: 414 NSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHEFSISLSRGREISVSDNDDLCSICLDGGNLLCCDGCPRVFHKECVSLANIPKGKWFCKFCNNMLQKEKFVEHNANAVAAGRVAGVDPIEQITKRCIRIVNT 548
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A5BY95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017668 PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 3.303e-66 Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406 NSE+SPSQFEAHAGW SRRKP+ +IYTSNGVSLHE SISLS+ R+ S +NDDLCSICLDGGNLLCCD CPR FH EC+SL IP G W C++C N QKEKFVE NANA+AAGRVAG+DPIEQITKR IRI+ T Sbjct: 449 NSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHEFSISLSRGREISVSDNDDLCSICLDGGNLLCCDGCPRVFHKECVSLANIPKGKWFCKFCNNMLQKEKFVEHNANAVAAGRVAGVDPIEQITKRCIRIVNT 583
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M0ZI39_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000459 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.368e-65 Identity = 100/137 (72.99%), Postives = 116/137 (84.67%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N+E+SPSQFEAHAG SRRKP+ IYTSNGVSLHELSI LSK R+ S ENDDLCSIC DGG+LLCCD CPRAFH EC+ LP IP GTW+C+YC+N F KE+FVE NANA+AAGRVAG+D IEQIT+R IR+++T E Sbjct: 635 NTEVSPSQFEAHAGCASRRKPYLYIYTSNGVSLHELSIKLSKERRSSAEENDDLCSICADGGDLLCCDNCPRAFHAECVCLPSIPTGTWYCKYCENMFAKERFVENNANAIAAGRVAGVDAIEQITRRCIRMVETLE 771
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: K4D9Q5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g066480.1 PE=4 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 8.623e-65 Identity = 100/137 (72.99%), Postives = 115/137 (83.94%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 N+E+SPSQFEAHAG SRRKP+ IYTSNGVSLHELSI LSK R+ S ENDDLCSIC DGG+LLCCD CPRAFH EC+ LP IP GTW+C+YC+N F KE+FVE NANA AAGRVAG+D IEQIT+R IR+++T E Sbjct: 650 NTEVSPSQFEAHAGCASRRKPYLYIYTSNGVSLHELSIKLSKERRSSAEENDDLCSICADGGDLLCCDNCPRAFHTECVCLPSIPTGTWYCKYCENMFAKERFVENNANAKAAGRVAGVDAIEQITRRCIRMVETLE 786
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: F6HKE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04490 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.785e-64 Identity = 99/131 (75.57%), Postives = 111/131 (84.73%), Query Frame = 2 Query: 8 EISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRII 400 E+S SQFEAHAGW SR+KP+ IYTSNGVSLHEL+ISLSK RK+S +NDDLCSIC DGGNLL CD CPRAFH C SLP IP W+CRYCQN FQ+EKFVE NANA+AAGRV+G+DPIEQITKR IRI+ Sbjct: 92 EVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIV 222
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: M5W7H1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001370mg PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.172e-64 Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKP+ IYTSNGVSLHEL+ISLS+ RK+S+ +NDDLC IC DGGNL+ CD CPRAFH +C SLP +P G W+C++CQN FQ+EKFVE N NA+AAGR++GIDPIEQIT+R IRI+K E Sbjct: 425 NSEVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSRGRKYSSKDNDDLCIICADGGNLVLCDGCPRAFHRDCASLPNVPRGDWYCKFCQNMFQREKFVEHNENAVAAGRISGIDPIEQITQRCIRIVKDIE 561
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.017e-13 Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC-QNTFQK 301 +N+D C++C DGG L+CCD CPRAFHL C+S P IP GTW C C Q T Q+ Sbjct: 294 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: IDM1_ARATH (Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.866e-12 Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNG-----VSLHELSISLSKNRKFSTYE-------NDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYC 283 N +S S+F+ HAG+ ++ P N++ +G L S R E NDD C +C DGG L+CCD CP FH C+S+ +P G+W+C C Sbjct: 664 NKTVSLSEFKNHAGF-NQNCPCLNLFMGSGKPFASCQLEAWSAEYKARRNGWRLEKASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.570e-12 Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC------QNTFQKE 304 +N+D C++C DGG L+CCD CPRAFHL C+S P IP G W C C QN Q E Sbjct: 296 KNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQGRVQQNLSQPE 355
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_HUMAN (Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=4) HSP 1 Score: 64.6994 bits (156), Expect = 3.712e-11 Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2 Query: 149 ENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 EN+D C++CL+GG LLCCD CP+ FHL C +L P G W C C++ Q E Sbjct: 968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1021
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: RCO1_YEAST (Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.925e-11 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 2 Query: 125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQ 286 KN +EN+D CS C G+ LCCDTCP++FH C+ P +P G WHC C+ Sbjct: 250 KNNSTIDFENEDFCSACNQSGSFLCCDTCPKSFHFLCLDPPIDPNNLPKGDWHCNECK 307
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 E DD C +C DGG LLCCDTCP ++H+ C++ LP IP G W C C Sbjct: 443 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 493 HSP 2 Score: 58.151 bits (139), Expect = 4.892e-9 Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286 YE D D C +C GG ++ CDTCPRA+H+ C+ + + P G W C +C+ Sbjct: 365 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 415
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2 Query: 149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283 E DD C +C DGG LLCCDTCP ++H+ C++ LP IP G W C C Sbjct: 436 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 486 HSP 2 Score: 60.077 bits (144), Expect = 1.081e-9 Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 2 Query: 146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQ 373 YE D D C +C GG ++ CDTCPRA+H+ C+ + + P G W C +C+ + + E N+ G DP E+ Sbjct: 358 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEE 437
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 62.7734 bits (151), Expect = 1.451e-10 Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2 Query: 128 NRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283 N K + +++ C +C DGG+LLCCD+CP +H C+S P IP G W C C Sbjct: 26 NAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_MOUSE (Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1 SV=3) HSP 1 Score: 62.3882 bits (150), Expect = 1.717e-10 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 122 SKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304 +K + EN+D C++C++GG LLCCD CP+ +HL C +L P G W C C++ Q E Sbjct: 985 AKKNTPAPIENEDFCAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1047
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_XENLA (E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.832e-10 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQ--NTFQKEKFVERNANALAAGRVAGIDPIEQI 376 N+D C++C +GG+LLCC+ CP+ FHL C +L P G W C +C+ N + E + + ++ V G+ P++Q+ Sbjct: 849 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPEVEYDCDNSQHSKKGKTVQGLSPVDQM 927 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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